Wall clock time and date at job start Mon Mar 30 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47270 * 2 1 4 4 C 1.46498 * 119.99816 * 274.15596 * 3 2 1 5 5 C 1.52998 * 109.46977 * 269.99951 * 4 3 2 6 6 H 1.09000 * 109.47537 * 60.00168 * 5 4 3 7 7 C 1.52999 * 109.46943 * 180.02562 * 5 4 3 8 8 O 1.42904 * 109.46899 * 299.99891 * 5 4 3 9 9 C 1.34771 * 120.00227 * 94.15037 * 3 2 1 10 10 O 1.21588 * 120.00281 * 184.95300 * 9 3 2 11 11 N 1.34781 * 120.00003 * 4.95092 * 9 3 2 12 12 C 1.46498 * 119.99805 * 185.02965 * 11 9 3 13 13 C 1.53004 * 109.47045 * 184.99848 * 12 11 9 14 14 C 1.50693 * 115.55341 * 54.04693 * 13 12 11 15 15 H 1.07997 * 120.00625 * 215.59234 * 14 13 12 16 16 C 1.37882 * 119.99740 * 35.31741 * 14 13 12 17 17 N 1.31516 * 120.00121 * 355.90539 * 16 14 13 18 18 Si 1.86803 * 120.00173 * 175.90201 * 16 14 13 19 19 H 1.48502 * 109.46750 * 90.00301 * 18 16 14 20 20 H 1.48500 * 109.47143 * 209.99979 * 18 16 14 21 21 H 1.48497 * 109.46988 * 330.00528 * 18 16 14 22 22 C 1.53001 * 117.50021 * 199.72449 * 13 12 11 23 23 C 1.53007 * 117.49476 * 268.38235 * 13 12 11 24 24 H 1.09001 * 109.47037 * 300.00348 * 1 2 3 25 25 H 1.09000 * 109.46895 * 60.00013 * 1 2 3 26 26 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47458 * 239.99787 * 2 1 3 28 28 H 1.09004 * 109.47147 * 119.99541 * 2 1 3 29 29 H 1.09004 * 109.47268 * 29.99998 * 4 3 2 30 30 H 1.09003 * 109.47344 * 149.99846 * 4 3 2 31 31 H 1.09001 * 109.47047 * 299.99420 * 7 5 4 32 32 H 1.09003 * 109.47502 * 59.99818 * 7 5 4 33 33 H 1.08999 * 109.47131 * 179.97438 * 7 5 4 34 34 H 0.96698 * 113.99836 * 180.02562 * 8 5 4 35 35 H 0.97001 * 119.99930 * 5.03919 * 11 9 3 36 36 H 1.08998 * 109.47172 * 65.00101 * 12 11 9 37 37 H 1.08997 * 109.47822 * 304.99582 * 12 11 9 38 38 H 0.96996 * 120.00249 * 184.99126 * 17 16 14 39 39 H 1.09000 * 117.49961 * 215.00165 * 22 13 12 40 40 H 1.09002 * 117.49996 * 0.02562 * 22 13 12 41 41 H 1.08998 * 117.50165 * 359.97069 * 23 13 12 42 42 H 1.09002 * 117.49613 * 144.97626 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1759 2.1024 -1.2654 5 6 3.5871 1.8739 -1.8104 6 1 3.7439 0.8083 -1.9777 7 6 3.7518 2.6276 -3.1316 8 8 4.5460 2.3541 -0.8659 9 6 2.3227 1.9884 1.1641 10 8 2.6415 3.1617 1.1726 11 7 2.2735 1.2951 2.3188 12 6 2.4963 1.9800 3.5945 13 6 2.5103 0.9535 4.7289 14 6 3.4768 -0.1901 4.5588 15 1 3.2125 -1.1772 4.9085 16 6 4.6963 0.0225 3.9516 17 7 4.9836 1.2033 3.4489 18 14 5.9404 -1.3667 3.8429 19 1 5.7261 -2.1258 2.5846 20 1 7.3142 -0.8028 3.8529 21 1 5.7700 -2.2759 5.0046 22 6 2.2664 1.4669 6.1494 23 6 1.1832 0.6583 5.4310 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.4444 1.7362 -1.9858 30 1 2.0191 3.1681 -1.0982 31 1 3.0204 2.2617 -3.8523 32 1 3.5951 3.6932 -2.9641 33 1 4.7573 2.4652 -3.5197 34 1 5.4646 2.2417 -1.1463 35 1 2.0908 0.3425 2.3052 36 1 1.6954 2.6994 3.7653 37 1 3.4529 2.5016 3.5648 38 1 5.8103 1.3336 2.9585 39 1 2.8051 0.9776 6.9609 40 1 2.0955 2.5360 6.2758 41 1 0.3004 1.1958 5.0850 42 1 1.0092 -0.3631 5.7695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355848517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:53 Heat of formation + Delta-G solvation = -47.932572 kcal Electronic energy + Delta-G solvation = -22428.104644 eV Core-core repulsion = 19216.585063 eV Total energy + Delta-G solvation = -3211.519581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37543 -37.24730 -36.47075 -35.00130 -32.84267 -32.06561 -31.34078 -29.81436 -26.72924 -25.53813 -24.47614 -22.90935 -21.28349 -21.08868 -19.14331 -18.65321 -17.63140 -16.85830 -16.06535 -15.72363 -14.97841 -14.67294 -14.09034 -14.01453 -13.76398 -13.47246 -13.39751 -12.73974 -12.54561 -12.43029 -12.37343 -12.01355 -11.87437 -11.58579 -11.32456 -11.26045 -11.02228 -10.86994 -10.79522 -10.60572 -10.44522 -10.13712 -9.67249 -9.58174 -8.99801 -8.84009 -8.72980 -8.18593 -8.08368 -7.44785 -5.84883 -4.07292 3.25325 3.35015 3.37276 3.45476 4.30903 4.37285 4.55462 4.84483 5.06055 5.10945 5.20327 5.27092 5.29538 5.45585 5.54208 5.57811 5.63861 5.80297 5.90408 5.95778 6.03722 6.06352 6.13560 6.28165 6.37165 6.41211 6.66334 6.69322 6.85632 6.97524 7.08332 7.25053 7.34252 7.70161 7.82998 8.01514 8.06827 8.15708 8.43617 8.89252 9.18608 9.55223 9.80319 11.02092 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.007158 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.326126 B = 3910.545651 C = 4586.592365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.635 5.635 4 C 0.145 3.855 5 C 0.082 3.918 6 H 0.046 0.954 7 C -0.182 4.182 8 O -0.535 6.535 9 C 0.711 3.289 10 O -0.591 6.591 11 N -0.702 5.702 12 C 0.184 3.816 13 C 0.039 3.961 14 C -0.501 4.501 15 H 0.058 0.942 16 C 0.076 3.924 17 N -0.853 5.853 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.200 4.200 23 C -0.213 4.213 24 H 0.059 0.941 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.365 0.635 35 H 0.390 0.610 36 H 0.009 0.991 37 H 0.113 0.887 38 H 0.263 0.737 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 -2.246 -11.538 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 N -0.373 5.373 4 C 0.020 3.980 5 C 0.021 3.979 6 H 0.064 0.936 7 C -0.241 4.241 8 O -0.337 6.337 9 C 0.412 3.588 10 O -0.469 6.469 11 N -0.355 5.355 12 C 0.060 3.940 13 C 0.038 3.962 14 C -0.539 4.539 15 H 0.076 0.924 16 C -0.130 4.130 17 N -0.488 5.488 18 Si 0.718 3.282 19 H -0.209 1.209 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.239 4.239 23 C -0.251 4.251 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.210 0.790 35 H 0.225 0.775 36 H 0.027 0.973 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.375 -1.080 -11.176 12.448 hybrid contribution 1.124 -1.536 -0.471 1.960 sum -4.251 -2.616 -11.647 12.672 Atomic orbital electron populations 1.22206 0.96528 1.01667 1.02301 1.21377 0.93830 0.83728 1.02667 1.46964 1.71364 1.13644 1.05352 1.21159 0.93127 0.98983 0.84720 1.22256 0.91497 0.96024 0.88171 0.93633 1.22472 1.01820 1.02053 0.97713 1.86905 1.17253 1.84892 1.44697 1.15737 0.78032 0.84942 0.80061 1.90813 1.54976 1.15513 1.85589 1.44864 1.74433 1.11443 1.04736 1.20851 1.00896 0.92472 0.79755 1.19259 0.92083 0.96139 0.88707 1.20419 0.99160 0.93618 1.40679 0.92392 1.25003 0.97696 0.95324 0.94953 1.69874 1.24503 1.20899 1.33521 0.86624 0.81113 0.82209 0.78213 1.20867 1.21230 1.20003 1.22934 1.04078 0.97102 0.99763 1.22935 0.93460 0.99360 1.09301 0.92170 0.92878 0.91977 0.91535 0.90236 0.90441 0.89498 0.92011 0.91635 0.92555 0.79031 0.77495 0.97256 0.86922 0.92667 0.90333 0.91541 0.91483 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 2 C 0.11 1.54 6.13 -4.04 -0.02 1.52 16 3 N -0.63 -11.23 2.43 -179.42 -0.44 -11.67 16 4 C 0.14 2.18 5.22 -4.04 -0.02 2.16 16 5 C 0.08 1.15 3.85 -26.73 -0.10 1.04 16 6 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 7 C -0.18 -1.94 9.53 37.16 0.35 -1.58 16 8 O -0.53 -9.63 12.14 -37.13 -0.45 -10.08 16 9 C 0.71 16.17 7.70 -86.92 -0.67 15.50 16 10 O -0.59 -15.73 15.36 3.39 0.05 -15.67 16 11 N -0.70 -16.10 4.90 -65.23 -0.32 -16.42 16 12 C 0.18 4.61 4.62 -4.04 -0.02 4.59 16 13 C 0.04 0.95 2.04 -155.66 -0.32 0.63 16 14 C -0.50 -13.07 8.43 -34.44 -0.29 -13.36 16 15 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 16 C 0.08 2.00 5.31 -17.82 -0.09 1.90 16 17 N -0.85 -23.64 10.11 55.43 0.56 -23.08 16 18 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 C -0.20 -4.52 9.96 -26.69 -0.27 -4.79 16 23 C -0.21 -4.57 9.92 -26.69 -0.26 -4.83 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 28 H 0.08 1.26 5.94 -51.93 -0.31 0.95 16 29 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.36 5.03 9.08 45.56 0.41 5.45 16 35 H 0.39 8.50 5.68 -40.82 -0.23 8.27 16 36 H 0.01 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.11 3.25 5.90 -51.93 -0.31 2.95 16 38 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 39 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -32.05 342.67 -8.06 -40.11 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -6.27 Total: 14.89 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.34 Total: 1.15 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.19 Total: -51.16 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.40 Total: -25.76 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.05 -8.06 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355848517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.824 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds