Wall clock time and date at job start Mon Mar 30 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47270 * 2 1 4 4 C 1.46498 * 119.99816 * 274.15596 * 3 2 1 5 5 C 1.52998 * 109.46977 * 269.99951 * 4 3 2 6 6 H 1.09000 * 109.47537 * 60.00168 * 5 4 3 7 7 C 1.52999 * 109.46943 * 180.02562 * 5 4 3 8 8 O 1.42904 * 109.46899 * 299.99891 * 5 4 3 9 9 C 1.34771 * 120.00227 * 94.15037 * 3 2 1 10 10 O 1.21588 * 120.00281 * 184.95300 * 9 3 2 11 11 N 1.34781 * 120.00003 * 4.95092 * 9 3 2 12 12 C 1.46498 * 119.99805 * 185.02965 * 11 9 3 13 13 C 1.53004 * 109.47045 * 184.99848 * 12 11 9 14 14 C 1.50693 * 115.55341 * 54.04693 * 13 12 11 15 15 H 1.07997 * 120.00625 * 215.59234 * 14 13 12 16 16 C 1.37882 * 119.99740 * 35.31741 * 14 13 12 17 17 N 1.31516 * 120.00121 * 355.90539 * 16 14 13 18 18 Si 1.86803 * 120.00173 * 175.90201 * 16 14 13 19 19 H 1.48502 * 109.46750 * 90.00301 * 18 16 14 20 20 H 1.48500 * 109.47143 * 209.99979 * 18 16 14 21 21 H 1.48497 * 109.46988 * 330.00528 * 18 16 14 22 22 C 1.53001 * 117.50021 * 199.72449 * 13 12 11 23 23 C 1.53007 * 117.49476 * 268.38235 * 13 12 11 24 24 H 1.09001 * 109.47037 * 300.00348 * 1 2 3 25 25 H 1.09000 * 109.46895 * 60.00013 * 1 2 3 26 26 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47458 * 239.99787 * 2 1 3 28 28 H 1.09004 * 109.47147 * 119.99541 * 2 1 3 29 29 H 1.09004 * 109.47268 * 29.99998 * 4 3 2 30 30 H 1.09003 * 109.47344 * 149.99846 * 4 3 2 31 31 H 1.09001 * 109.47047 * 299.99420 * 7 5 4 32 32 H 1.09003 * 109.47502 * 59.99818 * 7 5 4 33 33 H 1.08999 * 109.47131 * 179.97438 * 7 5 4 34 34 H 0.96698 * 113.99836 * 180.02562 * 8 5 4 35 35 H 0.97001 * 119.99930 * 5.03919 * 11 9 3 36 36 H 1.08998 * 109.47172 * 65.00101 * 12 11 9 37 37 H 1.08997 * 109.47822 * 304.99582 * 12 11 9 38 38 H 0.96996 * 120.00249 * 184.99126 * 17 16 14 39 39 H 1.09000 * 117.49961 * 215.00165 * 22 13 12 40 40 H 1.09002 * 117.49996 * 0.02562 * 22 13 12 41 41 H 1.08998 * 117.50165 * 359.97069 * 23 13 12 42 42 H 1.09002 * 117.49613 * 144.97626 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1759 2.1024 -1.2654 5 6 3.5871 1.8739 -1.8104 6 1 3.7439 0.8083 -1.9777 7 6 3.7518 2.6276 -3.1316 8 8 4.5460 2.3541 -0.8659 9 6 2.3227 1.9884 1.1641 10 8 2.6415 3.1617 1.1726 11 7 2.2735 1.2951 2.3188 12 6 2.4963 1.9800 3.5945 13 6 2.5103 0.9535 4.7289 14 6 3.4768 -0.1901 4.5588 15 1 3.2125 -1.1772 4.9085 16 6 4.6963 0.0225 3.9516 17 7 4.9836 1.2033 3.4489 18 14 5.9404 -1.3667 3.8429 19 1 5.7261 -2.1258 2.5846 20 1 7.3142 -0.8028 3.8529 21 1 5.7700 -2.2759 5.0046 22 6 2.2664 1.4669 6.1494 23 6 1.1832 0.6583 5.4310 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.4444 1.7362 -1.9858 30 1 2.0191 3.1681 -1.0982 31 1 3.0204 2.2617 -3.8523 32 1 3.5951 3.6932 -2.9641 33 1 4.7573 2.4652 -3.5197 34 1 5.4646 2.2417 -1.1463 35 1 2.0908 0.3425 2.3052 36 1 1.6954 2.6994 3.7653 37 1 3.4529 2.5016 3.5648 38 1 5.8103 1.3336 2.9585 39 1 2.8051 0.9776 6.9609 40 1 2.0955 2.5360 6.2758 41 1 0.3004 1.1958 5.0850 42 1 1.0092 -0.3631 5.7695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355848517.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:53 Heat of formation + Delta-G solvation = -70.166149 kcal Electronic energy + Delta-G solvation = -22429.068764 eV Core-core repulsion = 19216.585063 eV Total energy + Delta-G solvation = -3212.483702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97249 -38.79322 -38.07623 -36.48768 -34.61942 -34.04466 -32.54822 -30.97065 -28.24553 -27.45814 -26.04247 -24.12375 -22.95675 -22.40407 -21.06393 -20.26319 -19.16363 -18.25870 -17.74413 -17.26265 -16.71065 -16.34248 -15.73933 -15.38329 -15.21888 -15.01299 -14.71469 -14.30464 -14.20503 -13.76643 -13.43565 -13.39907 -13.26368 -12.96174 -12.87645 -12.83384 -12.54656 -12.45401 -12.26796 -12.02251 -11.99761 -11.88112 -11.47921 -10.92299 -10.83883 -10.72139 -10.61519 -10.11457 -9.71200 -9.14293 -7.85031 -6.13681 1.40865 1.45631 1.53970 2.00274 2.43841 2.62642 3.05051 3.37118 3.52356 3.70810 4.06182 4.08190 4.21148 4.26531 4.31750 4.42176 4.49031 4.58110 4.61077 4.80519 4.81746 4.86065 4.94727 4.97555 4.98510 5.01104 5.05290 5.15953 5.29618 5.34471 5.38547 5.55788 5.65429 5.86749 6.04665 6.11783 6.28129 6.43478 6.87582 6.99466 7.46478 7.51076 8.05732 8.98381 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.007158 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.326126 B = 3910.545651 C = 4586.592365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.103 3.897 3 N -0.630 5.630 4 C 0.137 3.863 5 C 0.077 3.923 6 H 0.059 0.941 7 C -0.171 4.171 8 O -0.577 6.577 9 C 0.704 3.296 10 O -0.639 6.639 11 N -0.699 5.699 12 C 0.198 3.802 13 C 0.008 3.992 14 C -0.506 4.506 15 H 0.058 0.942 16 C 0.034 3.966 17 N -0.879 5.879 18 Si 0.949 3.051 19 H -0.275 1.275 20 H -0.294 1.294 21 H -0.270 1.270 22 C -0.201 4.201 23 C -0.184 4.184 24 H 0.036 0.964 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.124 0.876 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.377 0.623 35 H 0.395 0.605 36 H 0.004 0.996 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.364 -4.337 -13.013 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.367 5.367 4 C 0.014 3.986 5 C 0.017 3.983 6 H 0.077 0.923 7 C -0.229 4.229 8 O -0.383 6.383 9 C 0.406 3.594 10 O -0.521 6.521 11 N -0.352 5.352 12 C 0.073 3.927 13 C 0.007 3.993 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.169 4.169 17 N -0.515 5.515 18 Si 0.775 3.225 19 H -0.200 1.200 20 H -0.221 1.221 21 H -0.194 1.194 22 C -0.240 4.240 23 C -0.221 4.221 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.142 0.858 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.224 0.776 35 H 0.231 0.769 36 H 0.022 0.978 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.525 -3.227 -12.685 14.625 hybrid contribution 1.431 -0.889 -0.020 1.685 sum -5.094 -4.117 -12.705 14.294 Atomic orbital electron populations 1.22127 0.94446 1.03239 1.01944 1.21636 0.95459 0.81623 1.03290 1.47020 1.70191 1.14925 1.04543 1.21490 0.95350 0.97368 0.84391 1.22447 0.89884 0.97141 0.88867 0.92293 1.22357 1.03548 1.00698 0.96286 1.86869 1.18847 1.85556 1.47063 1.16000 0.77733 0.84487 0.81218 1.90768 1.57095 1.17708 1.86538 1.44716 1.74546 1.11525 1.04414 1.20470 0.98379 0.92604 0.81285 1.19299 0.94352 0.96305 0.89344 1.20612 0.99519 0.93931 1.40265 0.92410 1.25635 0.99225 0.97119 0.94886 1.70103 1.24331 1.22598 1.34465 0.85702 0.78496 0.79760 0.78497 1.20018 1.22062 1.19428 1.22956 1.04617 0.97865 0.98518 1.22919 0.92608 0.99903 1.06666 0.94481 0.91263 0.89405 0.88303 0.92157 0.85816 0.92471 0.89189 0.93033 0.91269 0.77594 0.76890 0.97817 0.91049 0.93701 0.90369 0.90847 0.89934 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 10.24 71.98 0.74 -2.65 16 2 C 0.10 2.71 6.13 86.38 0.53 3.23 16 3 N -0.63 -21.85 2.43 -839.83 -2.04 -23.89 16 4 C 0.14 3.96 5.22 86.38 0.45 4.41 16 5 C 0.08 2.04 3.85 30.59 0.12 2.16 16 6 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 7 C -0.17 -3.25 9.53 71.98 0.69 -2.56 16 8 O -0.58 -21.20 12.14 -147.16 -1.79 -22.99 16 9 C 0.70 32.83 7.70 179.05 1.38 34.21 16 10 O -0.64 -35.60 15.36 -2.17 -0.03 -35.63 16 11 N -0.70 -32.76 4.90 -478.54 -2.34 -35.10 16 12 C 0.20 10.21 4.62 86.38 0.40 10.61 16 13 C 0.01 0.38 2.04 -52.93 -0.11 0.27 16 14 C -0.51 -26.26 8.43 25.60 0.22 -26.05 16 15 H 0.06 2.95 7.82 -2.91 -0.02 2.92 16 16 C 0.03 1.79 5.31 84.66 0.45 2.24 16 17 N -0.88 -50.19 10.11 21.45 0.22 -49.97 16 18 Si 0.95 42.45 29.54 68.60 2.03 44.48 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.20 -8.94 9.96 30.62 0.30 -8.64 16 23 C -0.18 -7.56 9.92 30.62 0.30 -7.26 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 28 H 0.06 1.83 5.94 -2.38 -0.01 1.82 16 29 H 0.12 2.36 8.07 -2.39 -0.02 2.34 16 30 H 0.06 2.00 7.36 -2.39 -0.02 1.98 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.38 10.66 9.08 -74.06 -0.67 9.99 16 35 H 0.39 17.37 5.68 -92.71 -0.53 16.85 16 36 H 0.00 0.19 8.09 -2.39 -0.02 0.17 16 37 H 0.07 4.33 5.90 -2.39 -0.01 4.32 16 38 H 0.25 14.44 8.32 -92.71 -0.77 13.67 16 39 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 41 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -71.92 342.67 1.32 -70.60 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.19 Total: 42.52 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.46 Total: 9.98 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.17 Total: -108.96 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -1.82 Total: -58.62 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.92 1.32 -70.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355848517.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.435 kcal (2) G-P(sol) polarization free energy of solvation -71.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds