Wall clock time and date at job start Mon Mar 30 2020 01:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42904 * 109.47193 * 2 1 4 4 C 1.42908 * 113.99923 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46685 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00205 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99859 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00240 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47108 * 179.97438 * 8 7 5 10 10 H 1.08993 * 109.49837 * 304.92937 * 9 8 7 11 11 C 1.53043 * 109.49492 * 184.83315 * 9 8 7 12 12 C 1.53038 * 109.53784 * 178.68498 * 11 9 8 13 13 C 1.52765 * 109.38424 * 61.24001 * 12 11 9 14 14 N 1.46924 * 109.00726 * 305.59230 * 13 12 11 15 15 C 1.36940 * 120.62840 * 233.58467 * 14 13 12 16 16 H 1.08001 * 120.00339 * 151.82102 * 15 14 13 17 17 C 1.38817 * 119.99931 * 331.81335 * 15 14 13 18 18 N 1.31618 * 119.99811 * 335.49820 * 17 15 14 19 19 Si 1.86796 * 120.00003 * 155.50111 * 17 15 14 20 20 H 1.48502 * 109.46996 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46664 * 299.99756 * 19 17 15 22 22 H 1.48490 * 109.47479 * 59.99634 * 19 17 15 23 23 C 1.46924 * 118.74146 * 53.30696 * 14 13 12 24 24 H 1.09004 * 109.47028 * 299.99993 * 1 2 3 25 25 H 1.08997 * 109.47284 * 59.99963 * 1 2 3 26 26 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47028 * 240.00007 * 2 1 3 28 28 H 1.08998 * 109.47675 * 119.99669 * 2 1 3 29 29 H 1.09001 * 109.47115 * 60.00224 * 4 3 2 30 30 H 1.08991 * 109.47019 * 299.99636 * 4 3 2 31 31 H 0.96998 * 119.99495 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47082 * 59.98925 * 8 7 5 33 33 H 1.09006 * 109.46510 * 299.99865 * 8 7 5 34 34 H 1.09000 * 109.46416 * 298.70532 * 11 9 8 35 35 H 1.08997 * 109.45880 * 58.68132 * 11 9 8 36 36 H 1.08999 * 109.49855 * 181.31880 * 12 11 9 37 37 H 1.09002 * 109.49456 * 301.41850 * 12 11 9 38 38 H 1.08997 * 109.50761 * 185.70928 * 13 12 11 39 39 H 1.08995 * 109.43030 * 65.42464 * 13 12 11 40 40 H 0.97008 * 119.99855 * 354.23961 * 18 17 15 41 41 H 1.09002 * 109.58713 * 66.43004 * 23 14 13 42 42 H 1.09002 * 109.58725 * 186.85660 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9161 -0.0012 6 8 2.9610 3.7728 -0.0016 7 7 5.1209 3.2663 -0.0023 8 6 5.4987 4.6818 -0.0023 9 6 7.0239 4.8026 -0.0030 10 1 7.4334 4.2447 0.8390 11 6 7.4196 6.2759 0.1185 12 6 8.9450 6.3952 0.1508 13 6 9.5244 5.8444 -1.1510 14 7 9.0298 4.4758 -1.3535 15 6 9.9030 3.4435 -1.5709 16 1 9.6362 2.4393 -1.2761 17 6 11.1310 3.6877 -2.1703 18 7 11.2863 4.7381 -2.9481 19 14 12.5630 2.5257 -1.8730 20 1 13.7531 3.0054 -2.6205 21 1 12.8740 2.4848 -0.4216 22 1 12.2004 1.1636 -2.3401 23 6 7.5811 4.2347 -1.3122 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8891 31 1 5.8074 2.5811 -0.0024 32 1 5.0966 5.1651 0.8881 33 1 5.0950 5.1655 -0.8919 34 1 7.0303 6.8283 -0.7367 35 1 7.0038 6.6890 1.0375 36 1 9.2258 7.4426 0.2610 37 1 9.3369 5.8226 0.9915 38 1 10.6126 5.8344 -1.0896 39 1 9.2090 6.4737 -1.9831 40 1 10.5232 5.2944 -3.1699 41 1 7.1040 4.7301 -2.1578 42 1 7.3876 3.1630 -1.3572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359726839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:41 Heat of formation + Delta-G solvation = -79.214909 kcal Electronic energy + Delta-G solvation = -20981.494251 eV Core-core repulsion = 17768.618166 eV Total energy + Delta-G solvation = -3212.876085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.83442 -38.23990 -37.56915 -34.96338 -33.22723 -31.81990 -30.70553 -30.28945 -27.95299 -25.13482 -24.98701 -23.05036 -22.26326 -21.04292 -20.53252 -19.13364 -17.51540 -17.16376 -16.93783 -16.64713 -15.52440 -15.26030 -14.55384 -14.45079 -14.16975 -13.85907 -13.62755 -13.30038 -13.24754 -12.98881 -12.71016 -12.49153 -12.29621 -12.12424 -11.64735 -11.56695 -11.49147 -10.95079 -10.71475 -10.43366 -10.30796 -10.08716 -10.02105 -9.94588 -9.91859 -9.67220 -9.29186 -8.99635 -8.40835 -6.92006 -6.10245 -3.27746 2.61485 2.75800 3.45753 3.49404 3.67446 3.85281 4.54362 4.65684 4.74269 4.87769 4.97629 4.99507 5.01414 5.06894 5.21686 5.33568 5.34384 5.37811 5.49306 5.62231 5.70877 5.83894 5.85256 5.85860 6.09091 6.18915 6.21113 6.39997 6.44707 6.50423 6.63192 6.67353 6.77759 6.82687 7.08093 7.18541 7.52035 7.94313 8.23149 8.53867 9.07938 9.80638 10.25859 11.18087 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.003739 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.545713 B = 7487.621520 C = 8484.592110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.512 3.488 6 O -0.527 6.527 7 N -0.723 5.723 8 C 0.129 3.871 9 C -0.118 4.118 10 H 0.074 0.926 11 C -0.100 4.100 12 C -0.136 4.136 13 C 0.148 3.852 14 N -0.599 5.599 15 C -0.352 4.352 16 H 0.055 0.945 17 C -0.024 4.024 18 N -0.915 5.915 19 Si 1.065 2.935 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.156 3.844 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.403 0.597 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.016 0.984 40 H 0.269 0.731 41 H 0.017 0.983 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 -6.602 7.313 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.036 4.036 5 C 0.296 3.704 6 O -0.402 6.402 7 N -0.377 5.377 8 C 0.006 3.994 9 C -0.138 4.138 10 H 0.093 0.907 11 C -0.138 4.138 12 C -0.175 4.175 13 C 0.022 3.978 14 N -0.322 5.322 15 C -0.481 4.481 16 H 0.073 0.927 17 C -0.226 4.226 18 N -0.555 5.555 19 Si 0.894 3.106 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.220 1.220 23 C 0.029 3.971 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.238 0.762 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.035 0.965 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.951 -6.087 6.978 15.920 hybrid contribution -1.119 -0.414 0.320 1.236 sum -14.070 -6.501 7.298 17.131 Atomic orbital electron populations 1.21727 0.93449 1.02188 1.03442 1.22550 0.95943 0.83440 1.00259 1.88018 1.18606 1.26301 1.95453 1.22204 0.83842 0.94858 1.02728 1.20205 0.82794 0.90466 0.76890 1.90715 1.49441 1.51806 1.48243 1.45960 1.06767 1.09543 1.75408 1.21453 0.95521 0.80553 1.01894 1.21949 0.92033 0.98137 1.01716 0.90739 1.21341 0.97001 0.94806 1.00678 1.21982 0.94795 0.99667 1.01096 1.20886 0.99453 0.85248 0.92187 1.44089 0.99964 1.04741 1.83429 1.19942 1.00208 0.89441 1.38494 0.92733 1.25853 1.00660 1.01625 0.94449 1.70778 1.35050 1.18665 1.30980 0.83532 0.76394 0.74748 0.75903 1.21076 1.22064 1.22004 1.20892 0.85882 0.97768 0.92512 0.91739 0.91676 0.90997 0.93105 0.93194 0.90098 0.90273 0.76178 0.91834 0.91524 0.92417 0.93080 0.92875 0.92397 0.90327 0.96605 0.91953 0.96485 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.15 0.38 -0.78 16 2 C 0.05 0.48 6.66 37.15 0.25 0.72 16 3 O -0.37 -4.67 9.88 -55.14 -0.54 -5.21 16 4 C 0.04 0.47 6.42 36.00 0.23 0.70 16 5 C 0.51 7.34 7.91 -10.99 -0.09 7.26 16 6 O -0.53 -9.87 16.50 -14.35 -0.24 -10.11 16 7 N -0.72 -9.49 5.33 -60.29 -0.32 -9.82 16 8 C 0.13 1.88 5.07 -4.04 -0.02 1.85 16 9 C -0.12 -1.89 2.38 -90.50 -0.22 -2.11 16 10 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 11 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 12 C -0.14 -2.49 6.06 -26.83 -0.16 -2.65 16 13 C 0.15 3.39 4.66 -3.93 -0.02 3.37 16 14 N -0.60 -14.45 2.85 -172.58 -0.49 -14.95 16 15 C -0.35 -9.49 9.49 -15.06 -0.14 -9.64 16 16 H 0.05 1.46 7.94 -52.49 -0.42 1.04 16 17 C -0.02 -0.65 4.70 -17.43 -0.08 -0.74 16 18 N -0.91 -27.01 12.42 55.49 0.69 -26.33 16 19 Si 1.06 24.61 29.98 -169.99 -5.10 19.51 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.16 3.08 5.60 -3.71 -0.02 3.06 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.40 4.56 7.70 -40.82 -0.31 4.25 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 2.03 6.32 -51.93 -0.33 1.70 16 39 H 0.02 0.37 7.86 -51.93 -0.41 -0.03 16 40 H 0.27 8.03 6.69 -40.82 -0.27 7.76 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.99 7.13 -51.93 -0.37 0.62 16 LS Contribution 338.43 15.07 5.10 5.10 Total: -1.00 -33.17 338.43 -8.18 -41.35 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.25 Total: 1.12 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.03 Total: -0.67 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.12 Total: -51.09 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.78 Total: -15.32 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.10 Total: 19.51 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.17 -8.18 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359726839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.869 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds