Wall clock time and date at job start Mon Mar 30 2020 01:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42904 * 109.47193 * 2 1 4 4 C 1.42908 * 113.99923 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.46685 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00205 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99859 * 180.02562 * 5 4 3 8 8 C 1.46501 * 120.00240 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47108 * 179.97438 * 8 7 5 10 10 H 1.08993 * 109.49837 * 304.92937 * 9 8 7 11 11 C 1.53043 * 109.49492 * 184.83315 * 9 8 7 12 12 C 1.53038 * 109.53784 * 178.68498 * 11 9 8 13 13 C 1.52765 * 109.38424 * 61.24001 * 12 11 9 14 14 N 1.46924 * 109.00726 * 305.59230 * 13 12 11 15 15 C 1.36940 * 120.62840 * 233.58467 * 14 13 12 16 16 H 1.08001 * 120.00339 * 151.82102 * 15 14 13 17 17 C 1.38817 * 119.99931 * 331.81335 * 15 14 13 18 18 N 1.31618 * 119.99811 * 335.49820 * 17 15 14 19 19 Si 1.86796 * 120.00003 * 155.50111 * 17 15 14 20 20 H 1.48502 * 109.46996 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46664 * 299.99756 * 19 17 15 22 22 H 1.48490 * 109.47479 * 59.99634 * 19 17 15 23 23 C 1.46924 * 118.74146 * 53.30696 * 14 13 12 24 24 H 1.09004 * 109.47028 * 299.99993 * 1 2 3 25 25 H 1.08997 * 109.47284 * 59.99963 * 1 2 3 26 26 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47028 * 240.00007 * 2 1 3 28 28 H 1.08998 * 109.47675 * 119.99669 * 2 1 3 29 29 H 1.09001 * 109.47115 * 60.00224 * 4 3 2 30 30 H 1.08991 * 109.47019 * 299.99636 * 4 3 2 31 31 H 0.96998 * 119.99495 * 359.97438 * 7 5 4 32 32 H 1.09000 * 109.47082 * 59.98925 * 8 7 5 33 33 H 1.09006 * 109.46510 * 299.99865 * 8 7 5 34 34 H 1.09000 * 109.46416 * 298.70532 * 11 9 8 35 35 H 1.08997 * 109.45880 * 58.68132 * 11 9 8 36 36 H 1.08999 * 109.49855 * 181.31880 * 12 11 9 37 37 H 1.09002 * 109.49456 * 301.41850 * 12 11 9 38 38 H 1.08997 * 109.50761 * 185.70928 * 13 12 11 39 39 H 1.08995 * 109.43030 * 65.42464 * 13 12 11 40 40 H 0.97008 * 119.99855 * 354.23961 * 18 17 15 41 41 H 1.09002 * 109.58713 * 66.43004 * 23 14 13 42 42 H 1.09002 * 109.58725 * 186.85660 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8194 2.9161 -0.0012 6 8 2.9610 3.7728 -0.0016 7 7 5.1209 3.2663 -0.0023 8 6 5.4987 4.6818 -0.0023 9 6 7.0239 4.8026 -0.0030 10 1 7.4334 4.2447 0.8390 11 6 7.4196 6.2759 0.1185 12 6 8.9450 6.3952 0.1508 13 6 9.5244 5.8444 -1.1510 14 7 9.0298 4.4758 -1.3535 15 6 9.9030 3.4435 -1.5709 16 1 9.6362 2.4393 -1.2761 17 6 11.1310 3.6877 -2.1703 18 7 11.2863 4.7381 -2.9481 19 14 12.5630 2.5257 -1.8730 20 1 13.7531 3.0054 -2.6205 21 1 12.8740 2.4848 -0.4216 22 1 12.2004 1.1636 -2.3401 23 6 7.5811 4.2347 -1.3122 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8891 31 1 5.8074 2.5811 -0.0024 32 1 5.0966 5.1651 0.8881 33 1 5.0950 5.1655 -0.8919 34 1 7.0303 6.8283 -0.7367 35 1 7.0038 6.6890 1.0375 36 1 9.2258 7.4426 0.2610 37 1 9.3369 5.8226 0.9915 38 1 10.6126 5.8344 -1.0896 39 1 9.2090 6.4737 -1.9831 40 1 10.5232 5.2944 -3.1699 41 1 7.1040 4.7301 -2.1578 42 1 7.3876 3.1630 -1.3572 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359726839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:40 Heat of formation + Delta-G solvation = -101.197608 kcal Electronic energy + Delta-G solvation = -20982.447492 eV Core-core repulsion = 17768.618166 eV Total energy + Delta-G solvation = -3213.829327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.96743 -39.62719 -38.58732 -36.43930 -34.84052 -32.61702 -32.24087 -31.93829 -28.98246 -27.04608 -26.27422 -23.93872 -23.68251 -22.57306 -21.69851 -20.65916 -19.38329 -18.18788 -17.94173 -17.46280 -16.61015 -16.45306 -16.24090 -15.87513 -15.43954 -15.38562 -15.23930 -14.91240 -14.23153 -14.05201 -13.88609 -13.72912 -13.55032 -13.29100 -13.22187 -12.69283 -12.42719 -12.32136 -12.18837 -11.98301 -11.91368 -11.75431 -11.69694 -11.49530 -11.10646 -10.88270 -10.68399 -10.45580 -10.14732 -8.92443 -8.22904 -5.39496 1.52918 1.59919 1.67468 1.81876 1.85745 2.67115 3.02296 3.22678 3.47815 3.72587 3.86846 3.92488 3.97279 4.15249 4.17139 4.25963 4.29707 4.34965 4.44604 4.49734 4.50208 4.65238 4.76962 4.78917 4.82869 4.84511 4.99955 5.02352 5.10853 5.20889 5.23950 5.25901 5.29731 5.39407 5.54875 5.84708 6.08343 6.39919 6.49971 7.06763 7.16411 7.78837 8.24443 9.01840 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022260 B = 0.003739 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.545713 B = 7487.621520 C = 8484.592110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.402 6.402 4 C 0.046 3.954 5 C 0.508 3.492 6 O -0.577 6.577 7 N -0.715 5.715 8 C 0.139 3.861 9 C -0.099 4.099 10 H 0.078 0.922 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.151 3.849 14 N -0.617 5.617 15 C -0.354 4.354 16 H 0.058 0.942 17 C -0.079 4.079 18 N -0.946 5.946 19 Si 1.115 2.885 20 H -0.296 1.296 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.154 3.846 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.414 0.586 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.042 0.958 39 H -0.001 1.001 40 H 0.253 0.747 41 H 0.005 0.995 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 -8.229 8.938 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.322 6.322 4 C -0.033 4.033 5 C 0.295 3.705 6 O -0.456 6.456 7 N -0.369 5.369 8 C 0.014 3.986 9 C -0.119 4.119 10 H 0.097 0.903 11 C -0.136 4.136 12 C -0.164 4.164 13 C 0.025 3.975 14 N -0.341 5.341 15 C -0.483 4.483 16 H 0.075 0.925 17 C -0.275 4.275 18 N -0.588 5.588 19 Si 0.940 3.060 20 H -0.223 1.223 21 H -0.205 1.205 22 H -0.199 1.199 23 C 0.028 3.972 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.251 0.749 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.063 0.937 41 H 0.023 0.977 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.574 -7.743 8.625 17.849 hybrid contribution -0.987 0.082 -0.216 1.014 sum -14.561 -7.661 8.408 18.477 Atomic orbital electron populations 1.21777 0.93184 1.03502 1.02424 1.22796 0.96280 0.81984 1.01765 1.87977 1.19595 1.28801 1.95798 1.22300 0.83508 0.92248 1.05237 1.20904 0.82307 0.91797 0.75468 1.90691 1.50737 1.53511 1.50692 1.45893 1.06996 1.09288 1.74690 1.21257 0.93978 0.81528 1.01807 1.21705 0.92836 0.98120 0.99286 0.90322 1.21351 0.95177 0.94790 1.02310 1.21841 0.96262 1.00494 0.97829 1.20771 0.97528 0.84966 0.94188 1.44349 1.01545 1.04574 1.83677 1.20262 1.00716 0.90320 1.37024 0.92474 1.27210 1.03561 1.02514 0.94188 1.70903 1.34282 1.20146 1.33474 0.82855 0.73089 0.73751 0.76353 1.22266 1.20490 1.19930 1.21026 0.83559 0.98378 0.94187 0.92615 0.92841 0.88503 0.91755 0.91386 0.87818 0.87161 0.74907 0.90920 0.92683 0.92552 0.89821 0.90794 0.92588 0.93938 0.98289 0.93722 0.97700 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 0.72 6.66 71.98 0.48 1.20 16 3 O -0.40 -9.66 9.88 -129.94 -1.28 -10.94 16 4 C 0.05 0.89 6.42 71.24 0.46 1.34 16 5 C 0.51 13.81 7.91 87.66 0.69 14.50 16 6 O -0.58 -21.39 16.50 16.01 0.26 -21.13 16 7 N -0.72 -17.31 5.33 -463.05 -2.47 -19.77 16 8 C 0.14 3.75 5.07 86.38 0.44 4.18 16 9 C -0.10 -2.98 2.38 -10.71 -0.03 -3.01 16 10 H 0.08 2.36 8.14 -2.39 -0.02 2.35 16 11 C -0.10 -2.91 5.17 30.62 0.16 -2.75 16 12 C -0.13 -4.40 6.06 30.53 0.19 -4.21 16 13 C 0.15 7.03 4.66 86.22 0.40 7.43 16 14 N -0.62 -29.89 2.85 -699.92 -2.00 -31.88 16 15 C -0.35 -19.07 9.49 84.03 0.80 -18.28 16 16 H 0.06 3.00 7.94 -2.91 -0.02 2.98 16 17 C -0.08 -4.39 4.70 84.86 0.40 -4.00 16 18 N -0.95 -57.45 12.42 21.65 0.27 -57.18 16 19 Si 1.11 49.60 29.98 68.60 2.06 51.66 16 20 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 C 0.15 5.97 5.60 86.36 0.48 6.45 16 24 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.41 8.29 7.70 -92.71 -0.71 7.57 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 2.26 6.32 -2.39 -0.02 2.24 16 39 H 0.00 -0.04 7.86 -2.39 -0.02 -0.06 16 40 H 0.25 15.73 6.69 -92.70 -0.62 15.11 16 41 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.06 2.13 7.13 -2.39 -0.02 2.11 16 Total: -1.00 -73.78 338.43 2.47 -71.31 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.42 Total: 16.45 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.21 Total: 1.49 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.20 Total: -108.84 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.02 Total: -32.07 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.06 Total: 51.66 kcal Total: -73.78 2.47 -71.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359726839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.887 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds