Wall clock time and date at job start Mon Mar 30 2020 00:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47143 * 2 1 4 4 C 1.46906 * 111.00060 * 297.50663 * 3 2 1 5 5 C 1.50701 * 109.47070 * 292.35185 * 4 3 2 6 6 H 1.08001 * 119.99820 * 354.95241 * 5 4 3 7 7 C 1.37878 * 120.00108 * 174.95721 * 5 4 3 8 8 N 1.31514 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47337 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46781 * 119.99791 * 9 7 5 12 12 H 1.48496 * 109.47227 * 239.99813 * 9 7 5 13 13 C 1.46898 * 111.00386 * 61.46180 * 3 2 1 14 14 C 1.50696 * 109.46992 * 66.04552 * 13 3 2 15 15 O 1.21284 * 120.00360 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99746 * 180.02562 * 14 13 3 17 17 C 1.46502 * 119.99673 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47062 * 179.97438 * 17 16 14 19 19 H 1.08997 * 110.27341 * 59.29816 * 18 17 16 20 20 C 1.54939 * 110.39602 * 181.44748 * 18 17 16 21 21 C 1.55305 * 100.94687 * 155.39995 * 20 18 17 22 22 C 1.54383 * 102.25034 * 325.86895 * 21 20 18 23 23 O 1.43237 * 107.59214 * 21.35397 * 22 21 20 24 24 H 1.08999 * 109.47011 * 59.08817 * 1 2 3 25 25 H 1.09000 * 109.47197 * 179.09143 * 1 2 3 26 26 H 1.09002 * 109.46743 * 299.09165 * 1 2 3 27 27 H 1.08995 * 109.46795 * 239.99771 * 2 1 3 28 28 H 1.09005 * 109.46816 * 119.99894 * 2 1 3 29 29 H 1.09005 * 109.46754 * 52.34579 * 4 3 2 30 30 H 1.08997 * 109.47337 * 172.34441 * 4 3 2 31 31 H 0.96997 * 119.99874 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47208 * 306.04713 * 13 3 2 33 33 H 1.09003 * 109.47373 * 186.04929 * 13 3 2 34 34 H 0.97001 * 120.00288 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.47110 * 59.99832 * 17 16 14 36 36 H 1.08993 * 109.47368 * 299.99954 * 17 16 14 37 37 H 1.09004 * 111.12633 * 273.32062 * 20 18 17 38 38 H 1.09010 * 111.12541 * 37.48067 * 20 18 17 39 39 H 1.08999 * 110.85200 * 207.67772 * 21 20 18 40 40 H 1.09009 * 111.01950 * 84.13369 * 21 20 18 41 41 H 1.09000 * 109.82856 * 261.83578 * 22 21 20 42 42 H 1.09000 * 109.82880 * 140.86937 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5980 2.0924 -1.2164 5 6 2.3002 1.5001 -2.4111 6 1 3.0507 0.7359 -2.2722 7 6 1.9846 1.9337 -3.6813 8 7 1.0712 2.8646 -3.8503 9 14 2.8556 1.1999 -5.1619 10 1 3.8328 0.1791 -4.7058 11 1 1.8571 0.5630 -6.0580 12 1 3.5685 2.2738 -5.8992 13 6 1.5775 2.0997 1.2048 14 6 2.2291 1.4891 2.4186 15 8 2.9876 0.5512 2.2926 16 7 1.9689 1.9854 3.6445 17 6 2.6028 1.3921 4.8245 18 6 2.1422 2.1365 6.0793 19 1 1.0582 2.0773 6.1771 20 6 2.8286 1.5492 7.3381 21 6 2.7638 2.7642 8.3033 22 6 2.9277 3.9582 7.3385 23 8 2.5639 3.5088 6.0280 24 1 -0.3633 0.5279 -0.8817 25 1 -0.3633 -1.0275 -0.0163 26 1 -0.3633 0.4997 0.8981 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5199 1.9900 -1.3410 30 1 1.8551 3.1482 -1.1304 31 1 0.8489 3.1694 -4.7439 32 1 0.4941 2.0221 1.2962 33 1 1.8614 3.1494 1.1292 34 1 1.3626 2.7358 3.7453 35 1 3.6862 1.4706 4.7331 36 1 2.3197 0.3423 4.8999 37 1 2.2665 0.7030 7.7334 38 1 3.8609 1.2690 7.1280 39 1 3.5817 2.7319 9.0231 40 1 1.8016 2.8071 8.8138 41 1 3.9644 4.2948 7.3396 42 1 2.2726 4.7737 7.6449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362170937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:16 Heat of formation + Delta-G solvation = -78.158322 kcal Electronic energy + Delta-G solvation = -20981.112871 eV Core-core repulsion = 17768.282602 eV Total energy + Delta-G solvation = -3212.830268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.01660 -39.16428 -36.57188 -34.51612 -32.54198 -32.50796 -30.75237 -29.50890 -28.10498 -25.93731 -24.48970 -23.01749 -22.10577 -21.56421 -20.39052 -19.22942 -17.32738 -16.81705 -16.10325 -15.99374 -15.73738 -15.50071 -15.01033 -14.54188 -14.37559 -13.98670 -13.61415 -13.46898 -12.91654 -12.78766 -12.50584 -12.19762 -12.14311 -11.70204 -11.65555 -11.59836 -11.36873 -11.22787 -11.10705 -10.81805 -10.66739 -10.51184 -9.95232 -9.87966 -9.84007 -9.30486 -8.99793 -8.83602 -8.37648 -7.08021 -5.97204 -3.97007 3.08237 3.22285 3.35917 3.43154 3.49704 3.56104 4.06673 4.37951 4.48461 4.49769 4.75883 4.81944 4.94906 5.13908 5.25720 5.27620 5.31793 5.38653 5.39664 5.44375 5.57660 5.69652 5.78366 5.83258 5.86847 6.00815 6.14216 6.25289 6.51288 6.61632 6.72577 6.76928 7.08758 7.34225 7.48327 7.71922 7.90642 8.15400 8.27674 8.58877 8.68317 9.12289 9.66880 11.13673 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039801 B = 0.003211 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.335959 B = 8717.957790 C = 8906.529411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 N -0.517 5.517 4 C 0.188 3.812 5 C -0.500 4.500 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.033 3.967 14 C 0.515 3.485 15 O -0.522 6.522 16 N -0.736 5.736 17 C 0.125 3.875 18 C 0.069 3.931 19 H 0.077 0.923 20 C -0.149 4.149 21 C -0.156 4.156 22 C 0.050 3.950 23 O -0.375 6.375 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.025 0.975 31 H 0.260 0.740 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -0.095 24.269 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.073 4.073 3 N -0.241 5.241 4 C 0.063 3.937 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.099 4.099 14 C 0.302 3.698 15 O -0.396 6.396 16 N -0.391 5.391 17 C 0.001 3.999 18 C 0.011 3.989 19 H 0.095 0.905 20 C -0.187 4.187 21 C -0.193 4.193 22 C -0.027 4.027 23 O -0.295 6.295 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.022 0.978 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.235 0.765 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.075 -0.577 23.828 23.835 hybrid contribution -0.850 0.113 -0.531 1.008 sum -0.775 -0.465 23.298 23.315 Atomic orbital electron populations 1.22424 0.99987 1.00987 1.01436 1.22117 0.91275 0.91129 1.02736 1.62080 1.59156 1.01975 1.00924 1.19846 0.94900 0.93683 0.85286 1.21199 1.21109 1.21594 0.89973 0.91717 1.24974 0.95379 0.95323 0.99015 1.69966 1.32215 1.29729 1.22232 0.86452 0.79499 0.79070 0.82500 1.19599 1.21198 1.21087 1.21964 0.97746 0.99569 0.90583 1.21005 0.81501 0.83309 0.83972 1.90635 1.35383 1.27826 1.85793 1.45952 1.49886 1.37301 1.05952 1.21400 0.98736 0.96574 0.83181 1.23265 0.98737 0.82185 0.94734 0.90470 1.23245 1.02456 0.98497 0.94481 1.23121 1.03233 0.94455 0.98532 1.23126 1.00553 0.96585 0.82388 1.88481 1.86424 1.26215 1.28359 0.91370 0.93383 0.94212 0.90200 0.91079 0.97762 0.95717 0.93091 0.92655 0.88659 0.76506 0.91069 0.90534 0.89499 0.89743 0.89885 0.90455 0.91228 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.06 1.19 5.55 -3.82 -0.02 1.17 16 3 N -0.52 -11.86 4.43 -237.51 -1.05 -12.91 16 4 C 0.19 4.93 4.54 -4.97 -0.02 4.91 16 5 C -0.50 -14.40 8.40 -34.44 -0.29 -14.69 16 6 H 0.06 1.89 7.42 -52.49 -0.39 1.51 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.14 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.03 0.61 5.23 -4.98 -0.03 0.58 16 14 C 0.52 8.99 7.54 -10.99 -0.08 8.91 16 15 O -0.52 -10.98 14.32 5.55 0.08 -10.90 16 16 N -0.74 -9.68 5.49 -60.29 -0.33 -10.01 16 17 C 0.13 1.41 5.40 -4.04 -0.02 1.39 16 18 C 0.07 0.59 3.49 -25.71 -0.09 0.50 16 19 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 20 C -0.15 -0.95 6.57 -24.49 -0.16 -1.11 16 21 C -0.16 -0.85 7.02 -24.78 -0.17 -1.03 16 22 C 0.05 0.37 7.79 37.88 0.30 0.67 16 23 O -0.38 -3.91 10.95 -35.23 -0.39 -4.29 16 24 H 0.07 1.45 6.26 -51.93 -0.32 1.13 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 27 H 0.08 1.85 7.01 -51.93 -0.36 1.49 16 28 H 0.07 1.51 5.86 -51.93 -0.30 1.20 16 29 H 0.00 0.13 6.00 -51.93 -0.31 -0.18 16 30 H 0.02 0.68 7.90 -51.93 -0.41 0.27 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.06 0.94 6.06 -51.93 -0.31 0.62 16 33 H 0.10 1.67 7.91 -51.93 -0.41 1.26 16 34 H 0.40 4.44 8.45 -40.82 -0.34 4.10 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.56 8.06 -51.92 -0.42 0.14 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 334.44 15.07 5.04 5.04 Total: -1.00 -33.56 334.44 -8.14 -41.70 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.86 Total: 0.92 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -0.35 Total: -0.49 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.65 Total: -49.12 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.31 Total: -15.19 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.56 -8.14 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362170937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.457 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds