Wall clock time and date at job start Mon Mar 30 2020 00:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46894 * 109.47143 * 2 1 4 4 C 1.46906 * 111.00060 * 297.50663 * 3 2 1 5 5 C 1.50701 * 109.47070 * 292.35185 * 4 3 2 6 6 H 1.08001 * 119.99820 * 354.95241 * 5 4 3 7 7 C 1.37878 * 120.00108 * 174.95721 * 5 4 3 8 8 N 1.31514 * 119.99897 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47337 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46781 * 119.99791 * 9 7 5 12 12 H 1.48496 * 109.47227 * 239.99813 * 9 7 5 13 13 C 1.46898 * 111.00386 * 61.46180 * 3 2 1 14 14 C 1.50696 * 109.46992 * 66.04552 * 13 3 2 15 15 O 1.21284 * 120.00360 * 0.02562 * 14 13 3 16 16 N 1.34780 * 119.99746 * 180.02562 * 14 13 3 17 17 C 1.46502 * 119.99673 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47062 * 179.97438 * 17 16 14 19 19 H 1.08997 * 110.27341 * 59.29816 * 18 17 16 20 20 C 1.54939 * 110.39602 * 181.44748 * 18 17 16 21 21 C 1.55305 * 100.94687 * 155.39995 * 20 18 17 22 22 C 1.54383 * 102.25034 * 325.86895 * 21 20 18 23 23 O 1.43237 * 107.59214 * 21.35397 * 22 21 20 24 24 H 1.08999 * 109.47011 * 59.08817 * 1 2 3 25 25 H 1.09000 * 109.47197 * 179.09143 * 1 2 3 26 26 H 1.09002 * 109.46743 * 299.09165 * 1 2 3 27 27 H 1.08995 * 109.46795 * 239.99771 * 2 1 3 28 28 H 1.09005 * 109.46816 * 119.99894 * 2 1 3 29 29 H 1.09005 * 109.46754 * 52.34579 * 4 3 2 30 30 H 1.08997 * 109.47337 * 172.34441 * 4 3 2 31 31 H 0.96997 * 119.99874 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47208 * 306.04713 * 13 3 2 33 33 H 1.09003 * 109.47373 * 186.04929 * 13 3 2 34 34 H 0.97001 * 120.00288 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.47110 * 59.99832 * 17 16 14 36 36 H 1.08993 * 109.47368 * 299.99954 * 17 16 14 37 37 H 1.09004 * 111.12633 * 273.32062 * 20 18 17 38 38 H 1.09010 * 111.12541 * 37.48067 * 20 18 17 39 39 H 1.08999 * 110.85200 * 207.67772 * 21 20 18 40 40 H 1.09009 * 111.01950 * 84.13369 * 21 20 18 41 41 H 1.09000 * 109.82856 * 261.83578 * 22 21 20 42 42 H 1.09000 * 109.82880 * 140.86937 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5980 2.0924 -1.2164 5 6 2.3002 1.5001 -2.4111 6 1 3.0507 0.7359 -2.2722 7 6 1.9846 1.9337 -3.6813 8 7 1.0712 2.8646 -3.8503 9 14 2.8556 1.1999 -5.1619 10 1 3.8328 0.1791 -4.7058 11 1 1.8571 0.5630 -6.0580 12 1 3.5685 2.2738 -5.8992 13 6 1.5775 2.0997 1.2048 14 6 2.2291 1.4891 2.4186 15 8 2.9876 0.5512 2.2926 16 7 1.9689 1.9854 3.6445 17 6 2.6028 1.3921 4.8245 18 6 2.1422 2.1365 6.0793 19 1 1.0582 2.0773 6.1771 20 6 2.8286 1.5492 7.3381 21 6 2.7638 2.7642 8.3033 22 6 2.9277 3.9582 7.3385 23 8 2.5639 3.5088 6.0280 24 1 -0.3633 0.5279 -0.8817 25 1 -0.3633 -1.0275 -0.0163 26 1 -0.3633 0.4997 0.8981 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5199 1.9900 -1.3410 30 1 1.8551 3.1482 -1.1304 31 1 0.8489 3.1694 -4.7439 32 1 0.4941 2.0221 1.2962 33 1 1.8614 3.1494 1.1292 34 1 1.3626 2.7358 3.7453 35 1 3.6862 1.4706 4.7331 36 1 2.3197 0.3423 4.8999 37 1 2.2665 0.7030 7.7334 38 1 3.8609 1.2690 7.1280 39 1 3.5817 2.7319 9.0231 40 1 1.8016 2.8071 8.8138 41 1 3.9644 4.2948 7.3396 42 1 2.2726 4.7737 7.6449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362170937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:16 Heat of formation + Delta-G solvation = -103.485279 kcal Electronic energy + Delta-G solvation = -20982.211130 eV Core-core repulsion = 17768.282602 eV Total energy + Delta-G solvation = -3213.928528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.04702 -40.23028 -38.24984 -35.72167 -34.69026 -33.12243 -31.80404 -31.02647 -29.82828 -27.33883 -25.75180 -24.96249 -22.70426 -22.33733 -21.82791 -20.79131 -18.44069 -17.98276 -17.89038 -17.17398 -17.04542 -16.54958 -16.43768 -16.11454 -15.70734 -15.26714 -14.95036 -14.56555 -14.26930 -14.15931 -13.68174 -13.53186 -13.38866 -13.11768 -12.86505 -12.67805 -12.66388 -12.56755 -12.51153 -12.24654 -12.16525 -11.95728 -11.69891 -11.55726 -11.34121 -10.61922 -10.58275 -10.49384 -10.05349 -8.88079 -8.18119 -6.26341 1.40432 1.41385 1.55292 1.69322 2.12209 2.43106 2.82899 3.14235 3.42930 3.53513 3.76425 3.95534 4.00055 4.15634 4.22739 4.25020 4.30315 4.42383 4.45813 4.55424 4.61512 4.66791 4.68897 4.85804 4.92027 4.93600 5.00835 5.01214 5.04815 5.23455 5.26221 5.36041 5.46624 5.53301 5.69795 6.06920 6.08318 6.37368 6.48633 6.72717 6.89402 7.33798 7.42601 8.92349 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039801 B = 0.003211 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.335959 B = 8717.957790 C = 8906.529411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 N -0.537 5.537 4 C 0.204 3.796 5 C -0.520 4.520 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.277 1.277 13 C 0.032 3.968 14 C 0.520 3.480 15 O -0.563 6.563 16 N -0.717 5.717 17 C 0.123 3.877 18 C 0.071 3.929 19 H 0.092 0.908 20 C -0.147 4.147 21 C -0.148 4.148 22 C 0.041 3.959 23 O -0.404 6.404 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.077 0.923 29 H -0.009 1.009 30 H 0.004 0.996 31 H 0.264 0.736 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.413 0.587 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 -0.458 25.865 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.068 4.068 3 N -0.261 5.261 4 C 0.078 3.922 5 C -0.559 4.559 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.203 1.203 13 C -0.100 4.100 14 C 0.306 3.694 15 O -0.441 6.441 16 N -0.371 5.371 17 C 0.000 4.000 18 C 0.014 3.986 19 H 0.110 0.890 20 C -0.185 4.185 21 C -0.185 4.185 22 C -0.035 4.035 23 O -0.324 6.324 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.008 0.992 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.249 0.751 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.429 -0.914 25.477 25.497 hybrid contribution -0.695 0.274 -0.932 1.194 sum -1.123 -0.640 24.545 24.579 Atomic orbital electron populations 1.22278 0.97856 1.02387 1.01071 1.22024 0.92999 0.90141 1.01634 1.61910 1.60181 1.02707 1.01291 1.19487 0.93646 0.92596 0.86425 1.21437 1.21292 1.21659 0.91484 0.92951 1.25791 0.95994 0.95590 1.01838 1.70061 1.33241 1.30653 1.23192 0.85413 0.78486 0.78387 0.78817 1.19436 1.20151 1.20273 1.22019 0.99080 0.99459 0.89409 1.20728 0.81001 0.82838 0.84816 1.90620 1.37284 1.29721 1.86457 1.45790 1.49114 1.36911 1.05249 1.21557 0.97633 0.97407 0.83434 1.23298 0.99641 0.81598 0.94062 0.88982 1.23268 1.02203 0.99446 0.93545 1.23115 1.04552 0.92743 0.98094 1.23311 1.00698 0.97727 0.81812 1.88443 1.86668 1.27009 1.30304 0.94079 0.91046 0.92105 0.92837 0.90501 0.99185 0.97791 0.92679 0.90587 0.88085 0.75054 0.92823 0.89906 0.87629 0.90283 0.88527 0.89140 0.91409 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.57 9.26 71.98 0.67 -5.90 16 2 C 0.06 2.60 5.55 86.31 0.48 3.07 16 3 N -0.54 -25.00 4.43 -905.36 -4.01 -29.01 16 4 C 0.20 11.04 4.54 85.56 0.39 11.42 16 5 C -0.52 -30.66 8.40 25.60 0.21 -30.45 16 6 H 0.05 3.15 7.42 -2.91 -0.02 3.13 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -56.16 13.29 21.45 0.28 -55.87 16 9 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.03 1.15 5.23 85.56 0.45 1.60 16 14 C 0.52 17.80 7.54 87.66 0.66 18.46 16 15 O -0.56 -23.68 14.32 -3.04 -0.04 -23.72 16 16 N -0.72 -17.93 5.49 -463.06 -2.54 -20.48 16 17 C 0.12 2.64 5.40 86.38 0.47 3.11 16 18 C 0.07 1.09 3.49 31.26 0.11 1.20 16 19 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 20 C -0.15 -1.52 6.57 32.05 0.21 -1.31 16 21 C -0.15 -1.22 7.02 31.86 0.22 -0.99 16 22 C 0.04 0.53 7.79 72.45 0.56 1.10 16 23 O -0.40 -7.84 10.95 -148.98 -1.63 -9.47 16 24 H 0.04 1.74 6.26 -2.39 -0.01 1.73 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 1.97 6.35 -2.39 -0.02 1.95 16 27 H 0.05 2.55 7.01 -2.39 -0.02 2.54 16 28 H 0.08 3.25 5.86 -2.38 -0.01 3.24 16 29 H -0.01 -0.53 6.00 -2.38 -0.01 -0.55 16 30 H 0.00 0.23 7.90 -2.39 -0.02 0.21 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.08 2.46 6.06 -2.39 -0.01 2.44 16 33 H 0.10 3.53 7.91 -2.39 -0.02 3.51 16 34 H 0.41 8.42 8.45 -92.71 -0.78 7.63 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 0.91 8.06 -2.38 -0.02 0.89 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -72.98 334.44 -0.80 -73.77 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.22 Total: 14.89 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 4.89 Total: 2.10 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -6.27 Total: -105.35 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.67 Total: -33.20 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.98 -0.80 -73.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362170937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.712 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds