Wall clock time and date at job start Mon Mar 30 2020 01:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46912 * 2 1 4 4 C 1.42901 * 114.00145 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47476 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47038 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46570 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99287 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00583 * 5.05598 * 8 7 6 10 10 N 1.34779 * 119.99490 * 185.04752 * 8 7 6 11 11 C 1.46506 * 119.99939 * 175.18512 * 10 8 7 12 12 C 1.53000 * 109.47160 * 185.07825 * 11 10 8 13 13 C 1.50699 * 115.54936 * 64.84254 * 12 11 10 14 14 H 1.07998 * 120.00225 * 266.80144 * 13 12 11 15 15 C 1.37876 * 119.99634 * 86.79934 * 13 12 11 16 16 N 1.31520 * 119.99552 * 178.76525 * 15 13 12 17 17 Si 1.86804 * 120.00281 * 358.77370 * 15 13 12 18 18 H 1.48494 * 109.47406 * 91.37328 * 17 15 13 19 19 H 1.48503 * 109.46840 * 211.37394 * 17 15 13 20 20 H 1.48494 * 109.46821 * 331.36891 * 17 15 13 21 21 C 1.52996 * 117.49758 * 279.17155 * 12 11 10 22 22 C 1.52998 * 117.49695 * 210.51452 * 12 11 10 23 23 H 1.09005 * 109.46784 * 300.00160 * 1 2 3 24 24 H 1.09002 * 109.47106 * 59.99749 * 1 2 3 25 25 H 1.09004 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47014 * 240.00518 * 2 1 3 27 27 H 1.08996 * 109.47339 * 119.99580 * 2 1 3 28 28 H 1.08998 * 109.47422 * 59.99193 * 4 3 2 29 29 H 1.09003 * 109.46556 * 299.99973 * 4 3 2 30 30 H 1.08998 * 109.46665 * 59.99774 * 5 4 3 31 31 H 1.08997 * 109.46558 * 299.99528 * 5 4 3 32 32 H 1.08996 * 109.46976 * 60.00116 * 6 5 4 33 33 H 1.09000 * 109.46797 * 299.99523 * 6 5 4 34 34 H 0.96996 * 120.00033 * 359.97438 * 7 6 5 35 35 H 0.96999 * 120.00377 * 354.92014 * 10 8 7 36 36 H 1.08998 * 109.46889 * 305.07936 * 11 10 8 37 37 H 1.09002 * 109.46788 * 65.07769 * 11 10 8 38 38 H 0.97005 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.09004 * 117.50109 * 0.02562 * 21 12 11 40 40 H 1.08996 * 117.49781 * 145.02314 * 21 12 11 41 41 H 1.09002 * 117.49646 * 214.98153 * 22 12 11 42 42 H 1.09004 * 117.49998 * 359.97122 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9385 -0.0012 6 6 5.3506 3.0593 -0.0012 7 7 5.7283 4.4748 -0.0023 8 6 7.0298 4.8249 -0.0020 9 8 7.8894 3.9699 -0.0935 10 7 7.3783 6.1228 0.0996 11 6 8.7912 6.4957 0.2063 12 6 8.9046 8.0042 0.4353 13 6 8.3328 8.5091 1.7350 14 1 7.3135 8.8637 1.7750 15 6 9.1111 8.5183 2.8731 16 7 8.6199 8.9815 4.0017 17 14 10.8631 7.8731 2.8118 18 1 11.7915 8.9901 2.5030 19 1 11.2193 7.2825 4.1270 20 1 10.9711 6.8335 1.7569 21 6 8.7893 8.9151 -0.7885 22 6 10.1468 8.7103 -0.1117 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.8333 0.9768 -0.8907 29 1 3.8339 0.9766 0.8892 30 1 3.4229 3.4222 0.8888 31 1 3.4223 3.4217 -0.8912 32 1 5.7534 2.5754 -0.8909 33 1 5.7533 2.5762 0.8891 34 1 5.0417 5.1599 -0.0034 35 1 6.6941 6.8104 0.0983 36 1 9.2445 5.9659 1.0440 37 1 9.3080 6.2282 -0.7154 38 1 9.1676 8.9883 4.8024 39 1 8.6321 8.4398 -1.7568 40 1 8.3002 9.8798 -0.6535 41 1 10.5503 9.5402 0.4684 42 1 10.8835 8.1000 -0.6343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362328799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:55 Heat of formation + Delta-G solvation = -65.041625 kcal Electronic energy + Delta-G solvation = -20279.557267 eV Core-core repulsion = 17067.295782 eV Total energy + Delta-G solvation = -3212.261486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.52936 -38.40275 -37.17438 -35.32045 -33.39594 -32.39003 -32.10726 -30.60302 -26.87157 -25.55654 -24.42127 -23.10721 -21.78592 -21.68197 -20.34274 -19.26518 -17.70425 -17.09659 -16.71207 -16.42061 -15.61940 -15.49670 -14.98351 -14.65354 -14.42062 -14.02116 -13.85620 -13.37418 -13.16342 -12.89339 -12.76596 -12.44359 -12.11205 -11.94992 -11.85572 -11.80431 -11.27404 -11.14875 -11.12532 -10.74535 -10.50606 -10.16605 -9.88878 -9.82718 -9.58997 -9.17381 -8.90237 -8.62740 -8.58153 -8.12903 -6.14623 -4.18912 2.96491 3.29965 3.40258 3.45549 3.51219 3.72190 4.41485 4.60365 4.68011 4.75194 4.77962 4.88865 4.98797 5.05411 5.06815 5.15391 5.20721 5.34274 5.40274 5.55985 5.56456 5.71041 5.76971 5.94931 5.97499 6.03442 6.08635 6.28717 6.43128 6.50589 6.70516 6.71186 6.91541 7.01966 7.09640 7.20655 7.43986 7.69338 8.42237 8.56137 8.85339 9.10449 9.48664 10.96742 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.003023 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.042418 B = 9260.827101 C = 9531.659738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.391 6.391 4 C 0.067 3.933 5 C -0.130 4.130 6 C 0.145 3.855 7 N -0.752 5.752 8 C 0.701 3.299 9 O -0.605 6.605 10 N -0.719 5.719 11 C 0.175 3.825 12 C -0.016 4.016 13 C -0.488 4.488 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.896 5.896 17 Si 0.879 3.121 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.256 1.256 21 C -0.179 4.179 22 C -0.192 4.192 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.265 0.735 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 -13.520 -9.028 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.310 6.310 4 C -0.010 4.010 5 C -0.168 4.168 6 C 0.020 3.980 7 N -0.409 5.409 8 C 0.401 3.599 9 O -0.485 6.485 10 N -0.372 5.372 11 C 0.051 3.949 12 C -0.018 4.018 13 C -0.525 4.525 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.533 5.533 17 Si 0.706 3.294 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.180 1.180 21 C -0.216 4.216 22 C -0.230 4.230 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.975 -14.113 -8.865 19.956 hybrid contribution 0.530 0.137 0.195 0.581 sum -10.445 -13.977 -8.671 19.484 Atomic orbital electron populations 1.21751 0.93751 1.02210 1.03207 1.22457 0.95596 0.83782 1.00124 1.87869 1.21177 1.26483 1.95481 1.22332 0.81167 0.96866 1.00664 1.21679 0.95106 0.95866 1.04191 1.20898 0.92870 0.81954 1.02295 1.44995 1.06233 1.07857 1.81842 1.15975 0.82404 0.83528 0.77997 1.90866 1.49140 1.49870 1.58595 1.44977 1.09970 1.04965 1.77279 1.21014 0.79269 0.95385 0.99259 1.19638 0.98333 0.88952 0.94827 1.20172 1.00270 1.42474 0.89620 0.90453 1.24971 0.98390 0.93926 0.95101 1.69891 1.37356 1.45641 1.00422 0.86856 0.85008 0.80033 0.77455 1.20434 1.22062 1.18000 1.22838 1.00583 1.02080 0.96096 1.22951 0.91152 1.04000 1.04917 0.91789 0.91842 0.91140 0.93408 0.93347 0.92970 0.92870 0.90234 0.90418 0.91743 0.91733 0.77009 0.76688 0.91832 0.94191 0.92516 0.90869 0.89437 0.89157 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.43 6.66 37.16 0.25 0.68 16 3 O -0.39 -3.99 10.34 -35.23 -0.36 -4.35 16 4 C 0.07 0.60 5.94 37.16 0.22 0.82 16 5 C -0.13 -1.23 5.70 -26.73 -0.15 -1.38 16 6 C 0.14 1.74 5.68 -4.04 -0.02 1.72 16 7 N -0.75 -10.60 5.56 -65.22 -0.36 -10.96 16 8 C 0.70 13.22 8.55 -86.92 -0.74 12.47 16 9 O -0.61 -13.64 16.36 5.29 0.09 -13.55 16 10 N -0.72 -13.67 5.46 -65.22 -0.36 -14.03 16 11 C 0.17 3.76 5.12 -4.04 -0.02 3.74 16 12 C -0.02 -0.36 0.81 -155.66 -0.13 -0.48 16 13 C -0.49 -12.87 9.29 -34.44 -0.32 -13.19 16 14 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 16 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 17 Si 0.88 21.59 24.88 -169.99 -4.23 17.36 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -6.06 5.73 56.52 0.32 -5.74 16 21 C -0.18 -3.42 9.96 -26.70 -0.27 -3.69 16 22 C -0.19 -3.95 7.60 -26.70 -0.20 -4.16 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 4.55 8.49 -40.82 -0.35 4.21 16 35 H 0.40 6.89 8.47 -40.82 -0.35 6.54 16 36 H 0.06 1.53 6.65 -51.93 -0.35 1.18 16 37 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.09 1.94 7.27 -51.93 -0.38 1.57 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 346.91 15.07 5.23 5.23 Total: -1.00 -32.37 346.91 -7.72 -40.08 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.39 Total: 8.05 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.10 Total: -1.95 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.05 Total: -50.87 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.28 Total: -17.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.23 Total: 17.36 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.37 -7.72 -40.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362328799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.957 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds