Wall clock time and date at job start Mon Mar 30 2020 01:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46912 * 2 1 4 4 C 1.42901 * 114.00145 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47476 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47038 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46570 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99287 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00583 * 5.05598 * 8 7 6 10 10 N 1.34779 * 119.99490 * 185.04752 * 8 7 6 11 11 C 1.46506 * 119.99939 * 175.18512 * 10 8 7 12 12 C 1.53000 * 109.47160 * 185.07825 * 11 10 8 13 13 C 1.50699 * 115.54936 * 64.84254 * 12 11 10 14 14 H 1.07998 * 120.00225 * 266.80144 * 13 12 11 15 15 C 1.37876 * 119.99634 * 86.79934 * 13 12 11 16 16 N 1.31520 * 119.99552 * 178.76525 * 15 13 12 17 17 Si 1.86804 * 120.00281 * 358.77370 * 15 13 12 18 18 H 1.48494 * 109.47406 * 91.37328 * 17 15 13 19 19 H 1.48503 * 109.46840 * 211.37394 * 17 15 13 20 20 H 1.48494 * 109.46821 * 331.36891 * 17 15 13 21 21 C 1.52996 * 117.49758 * 279.17155 * 12 11 10 22 22 C 1.52998 * 117.49695 * 210.51452 * 12 11 10 23 23 H 1.09005 * 109.46784 * 300.00160 * 1 2 3 24 24 H 1.09002 * 109.47106 * 59.99749 * 1 2 3 25 25 H 1.09004 * 109.46911 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47014 * 240.00518 * 2 1 3 27 27 H 1.08996 * 109.47339 * 119.99580 * 2 1 3 28 28 H 1.08998 * 109.47422 * 59.99193 * 4 3 2 29 29 H 1.09003 * 109.46556 * 299.99973 * 4 3 2 30 30 H 1.08998 * 109.46665 * 59.99774 * 5 4 3 31 31 H 1.08997 * 109.46558 * 299.99528 * 5 4 3 32 32 H 1.08996 * 109.46976 * 60.00116 * 6 5 4 33 33 H 1.09000 * 109.46797 * 299.99523 * 6 5 4 34 34 H 0.96996 * 120.00033 * 359.97438 * 7 6 5 35 35 H 0.96999 * 120.00377 * 354.92014 * 10 8 7 36 36 H 1.08998 * 109.46889 * 305.07936 * 11 10 8 37 37 H 1.09002 * 109.46788 * 65.07769 * 11 10 8 38 38 H 0.97005 * 119.99719 * 180.02562 * 16 15 13 39 39 H 1.09004 * 117.50109 * 0.02562 * 21 12 11 40 40 H 1.08996 * 117.49781 * 145.02314 * 21 12 11 41 41 H 1.09002 * 117.49646 * 214.98153 * 22 12 11 42 42 H 1.09004 * 117.49998 * 359.97122 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9385 -0.0012 6 6 5.3506 3.0593 -0.0012 7 7 5.7283 4.4748 -0.0023 8 6 7.0298 4.8249 -0.0020 9 8 7.8894 3.9699 -0.0935 10 7 7.3783 6.1228 0.0996 11 6 8.7912 6.4957 0.2063 12 6 8.9046 8.0042 0.4353 13 6 8.3328 8.5091 1.7350 14 1 7.3135 8.8637 1.7750 15 6 9.1111 8.5183 2.8731 16 7 8.6199 8.9815 4.0017 17 14 10.8631 7.8731 2.8118 18 1 11.7915 8.9901 2.5030 19 1 11.2193 7.2825 4.1270 20 1 10.9711 6.8335 1.7569 21 6 8.7893 8.9151 -0.7885 22 6 10.1468 8.7103 -0.1117 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.8333 0.9768 -0.8907 29 1 3.8339 0.9766 0.8892 30 1 3.4229 3.4222 0.8888 31 1 3.4223 3.4217 -0.8912 32 1 5.7534 2.5754 -0.8909 33 1 5.7533 2.5762 0.8891 34 1 5.0417 5.1599 -0.0034 35 1 6.6941 6.8104 0.0983 36 1 9.2445 5.9659 1.0440 37 1 9.3080 6.2282 -0.7154 38 1 9.1676 8.9883 4.8024 39 1 8.6321 8.4398 -1.7568 40 1 8.3002 9.8798 -0.6535 41 1 10.5503 9.5402 0.4684 42 1 10.8835 8.1000 -0.6343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362328799.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:54 Heat of formation + Delta-G solvation = -88.860523 kcal Electronic energy + Delta-G solvation = -20280.590132 eV Core-core repulsion = 17067.295782 eV Total energy + Delta-G solvation = -3213.294351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98925 -39.15507 -38.79329 -36.46119 -34.99221 -34.20305 -33.23700 -31.38027 -28.47755 -27.27082 -25.66440 -23.67667 -23.33464 -22.59372 -21.77615 -21.06095 -19.21131 -18.36315 -17.77185 -17.43883 -17.00745 -16.89543 -16.49613 -15.77446 -15.57660 -15.40805 -15.04682 -14.84200 -14.69145 -14.36773 -14.02013 -13.67382 -13.45368 -13.07947 -12.70123 -12.67641 -12.60952 -12.57597 -12.17306 -11.96523 -11.94274 -11.85774 -11.59948 -11.34411 -10.97083 -10.64549 -10.54686 -10.37639 -10.25798 -9.61118 -8.29079 -6.34862 1.34321 1.40508 1.50942 1.74047 2.23088 2.37516 2.71534 3.06466 3.17367 3.55128 3.96658 4.04496 4.07368 4.12123 4.18292 4.38581 4.38939 4.44214 4.49975 4.50595 4.53458 4.56615 4.67054 4.82073 4.88365 4.89298 5.03241 5.11514 5.12268 5.13311 5.28421 5.33038 5.50760 5.52781 5.65542 5.71763 6.11829 6.26661 6.29690 6.73420 7.19031 7.35505 7.64558 8.85589 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029189 B = 0.003023 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.042418 B = 9260.827101 C = 9531.659738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.411 6.411 4 C 0.066 3.934 5 C -0.117 4.117 6 C 0.145 3.855 7 N -0.736 5.736 8 C 0.697 3.303 9 O -0.643 6.643 10 N -0.718 5.718 11 C 0.184 3.816 12 C -0.041 4.041 13 C -0.475 4.475 14 H 0.045 0.955 15 C 0.024 3.976 16 N -0.946 5.946 17 Si 0.929 3.071 18 H -0.266 1.266 19 H -0.304 1.304 20 H -0.241 1.241 21 C -0.150 4.150 22 C -0.192 4.192 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.407 0.593 36 H 0.033 0.967 37 H 0.054 0.946 38 H 0.264 0.736 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -14.379 -11.009 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.332 6.332 4 C -0.011 4.011 5 C -0.155 4.155 6 C 0.021 3.979 7 N -0.393 5.393 8 C 0.397 3.603 9 O -0.526 6.526 10 N -0.372 5.372 11 C 0.059 3.941 12 C -0.042 4.042 13 C -0.513 4.513 14 H 0.064 0.936 15 C -0.174 4.174 16 N -0.585 5.585 17 Si 0.755 3.245 18 H -0.191 1.191 19 H -0.232 1.232 20 H -0.164 1.164 21 C -0.187 4.187 22 C -0.230 4.230 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.247 0.753 35 H 0.243 0.757 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.121 -14.964 -10.878 21.585 hybrid contribution 0.435 0.394 0.780 0.976 sum -10.685 -14.570 -10.097 20.698 Atomic orbital electron populations 1.21776 0.93014 1.03346 1.02664 1.22665 0.96286 0.82835 1.00945 1.87833 1.21578 1.28114 1.95644 1.22344 0.80994 0.96383 1.01411 1.21532 0.92909 0.96601 1.04482 1.20999 0.94630 0.80464 1.01852 1.44915 1.04938 1.09301 1.80178 1.16150 0.83432 0.82944 0.77781 1.90836 1.50650 1.50749 1.60363 1.44875 1.09439 1.05455 1.77394 1.20742 0.80511 0.94208 0.98620 1.19458 1.00679 0.89733 0.94349 1.20356 0.98829 1.40580 0.91502 0.93646 1.25716 1.02092 0.94633 0.94936 1.70021 1.38907 1.48350 1.01263 0.86040 0.81112 0.80133 0.77255 1.19094 1.23156 1.16418 1.22872 0.98926 1.01069 0.95876 1.23023 0.91743 1.03452 1.04742 0.92459 0.92223 0.89202 0.92386 0.92706 0.91933 0.92489 0.90393 0.89631 0.91706 0.92699 0.75334 0.75750 0.94891 0.92778 0.92740 0.87787 0.89560 0.90317 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 71.98 0.74 -0.98 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.41 -7.82 10.34 -148.98 -1.54 -9.36 16 4 C 0.07 1.07 5.94 71.98 0.43 1.50 16 5 C -0.12 -2.02 5.70 30.60 0.17 -1.85 16 6 C 0.14 3.30 5.68 86.38 0.49 3.79 16 7 N -0.74 -19.73 5.56 -478.53 -2.66 -22.39 16 8 C 0.70 25.55 8.55 179.05 1.53 27.08 16 9 O -0.64 -28.56 16.36 -3.99 -0.07 -28.63 16 10 N -0.72 -26.42 5.46 -478.52 -2.61 -29.03 16 11 C 0.18 7.63 5.12 86.38 0.44 8.07 16 12 C -0.04 -1.74 0.81 -52.93 -0.04 -1.78 16 13 C -0.47 -25.15 9.29 25.60 0.24 -24.91 16 14 H 0.05 2.63 8.06 -2.91 -0.02 2.61 16 15 C 0.02 1.36 5.47 84.65 0.46 1.82 16 16 N -0.95 -57.75 13.96 21.45 0.30 -57.45 16 17 Si 0.93 44.43 24.88 68.60 1.71 46.14 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 20 H -0.24 -10.85 5.73 99.48 0.57 -10.28 16 21 C -0.15 -5.27 9.96 30.62 0.30 -4.97 16 22 C -0.19 -7.32 7.60 30.62 0.23 -7.09 16 23 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.41 8.71 8.49 -92.71 -0.79 7.92 16 35 H 0.41 13.52 8.47 -92.71 -0.79 12.74 16 36 H 0.03 1.56 6.65 -2.39 -0.02 1.54 16 37 H 0.05 2.09 8.09 -2.39 -0.02 2.07 16 38 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 39 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 40 H 0.09 3.06 8.14 -2.39 -0.02 3.05 16 41 H 0.08 3.20 7.27 -2.39 -0.02 3.18 16 42 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -70.05 346.91 -0.10 -70.15 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.71 Total: 28.75 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.48 Total: 1.83 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -4.97 Total: -108.88 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.61 Total: -37.99 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.71 Total: 46.14 kcal Total: -70.05 -0.10 -70.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362328799.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.709 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds