Wall clock time and date at job start Mon Mar 30 2020 00:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47177 * 2 1 4 4 C 1.46500 * 120.00063 * 269.99891 * 3 2 1 5 5 C 1.50698 * 109.47288 * 270.00216 * 4 3 2 6 6 H 1.08001 * 120.00088 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00528 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99329 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00548 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47186 * 89.99831 * 9 7 5 11 11 H 1.48499 * 109.47307 * 209.99675 * 9 7 5 12 12 H 1.48497 * 109.47131 * 330.00285 * 9 7 5 13 13 C 1.34773 * 120.00016 * 90.00191 * 3 2 1 14 14 O 1.21286 * 120.00116 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00217 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47266 * 180.02562 * 15 13 3 17 17 C 1.44086 * 110.95701 * 304.15323 * 16 15 13 18 18 C 1.54621 * 112.40171 * 217.23736 * 17 16 15 19 19 C 1.54570 * 110.90175 * 319.60613 * 18 17 16 20 20 O 1.39908 * 113.22641 * 319.28778 * 19 18 17 21 21 C 1.44516 * 112.80898 * 94.90115 * 20 19 18 22 22 C 1.46264 * 111.30878 * 280.44738 * 21 20 19 23 23 H 1.09003 * 109.47211 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47241 * 300.00084 * 1 2 3 25 25 H 1.08997 * 109.47356 * 60.00399 * 1 2 3 26 26 H 1.08998 * 109.47294 * 239.99396 * 2 1 3 27 27 H 1.09006 * 109.47172 * 119.99685 * 2 1 3 28 28 H 1.09000 * 109.47174 * 29.99746 * 4 3 2 29 29 H 1.08998 * 109.47172 * 149.99869 * 4 3 2 30 30 H 0.97011 * 119.99578 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47100 * 60.00049 * 15 13 3 32 32 H 1.09006 * 109.47104 * 299.99962 * 15 13 3 33 33 H 1.09005 * 108.92695 * 96.48224 * 17 16 15 34 34 H 1.09004 * 108.91598 * 337.98525 * 17 16 15 35 35 H 1.09005 * 109.19208 * 199.23838 * 18 17 16 36 36 H 1.09001 * 109.15366 * 79.94944 * 18 17 16 37 37 H 1.09002 * 108.73195 * 198.32431 * 19 18 17 38 38 H 1.09001 * 108.73529 * 80.25859 * 19 18 17 39 39 H 1.08992 * 109.11631 * 159.97195 * 21 20 19 40 40 H 1.09002 * 109.11071 * 40.91470 * 21 20 19 41 41 H 1.09002 * 108.91614 * 180.21609 * 22 21 20 42 42 H 1.08997 * 108.91280 * 298.85479 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3895 -2.8779 8 7 3.3488 3.1248 -3.6186 9 14 5.9135 2.0965 -3.4169 10 1 5.9775 0.8751 -4.2591 11 1 6.3921 3.2637 -4.2004 12 1 6.7736 1.9177 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3091 2.2065 3.5888 17 6 3.6619 2.6924 3.4901 18 6 4.3459 2.8161 4.8713 19 6 3.3630 3.3750 5.9253 20 8 2.5550 4.4062 5.4342 21 6 1.2717 3.9368 4.9638 22 6 1.3768 3.3529 3.6268 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 3.6747 3.5147 -4.4449 31 1 2.6211 0.4186 2.5302 32 1 0.9431 1.0126 2.5299 33 1 3.6518 3.6722 3.0125 34 1 4.2395 2.0062 2.8707 35 1 5.2018 3.4861 4.7886 36 1 4.6907 1.8321 5.1891 37 1 3.9356 3.7523 6.7725 38 1 2.7230 2.5637 6.2720 39 1 0.5745 4.7740 4.9338 40 1 0.8928 3.1827 5.6537 41 1 0.3898 3.0164 3.3096 42 1 1.7286 4.1174 2.9341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363378240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:01 Heat of formation + Delta-G solvation = -67.998664 kcal Electronic energy + Delta-G solvation = -22214.990692 eV Core-core repulsion = 19002.600980 eV Total energy + Delta-G solvation = -3212.389713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.14288 -38.60748 -36.11893 -34.97070 -32.83582 -32.53537 -30.17268 -29.92260 -27.52164 -26.18567 -25.00003 -23.06134 -22.48728 -21.51897 -20.32634 -18.34515 -16.80229 -16.61036 -16.44558 -16.04802 -15.55166 -15.39346 -14.80526 -14.46838 -14.26670 -13.63853 -13.50152 -13.31072 -13.10850 -12.73038 -12.46374 -12.10391 -11.92443 -11.79172 -11.52163 -11.33409 -11.16878 -10.94496 -10.85851 -10.73234 -10.66014 -10.51937 -10.20890 -10.13488 -9.67799 -9.55617 -9.45702 -8.45947 -7.90803 -7.69243 -6.06752 -4.11568 3.27783 3.32567 3.35440 3.40522 3.90300 3.96836 4.02757 4.42673 5.03986 5.05972 5.15425 5.24448 5.27637 5.29653 5.33168 5.36635 5.46694 5.49015 5.61190 5.66694 5.70482 5.74663 5.79953 5.99957 6.07215 6.11641 6.15990 6.20289 6.29520 6.44163 6.50160 6.97629 7.11813 7.23120 7.37324 7.41578 7.52335 7.89475 8.21159 8.38750 8.86962 9.04682 9.53693 11.01308 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.005409 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.240559 B = 5175.531194 C = 5923.686360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.595 5.595 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.473 3.527 14 O -0.540 6.540 15 C 0.034 3.966 16 N -0.509 5.509 17 C 0.054 3.946 18 C -0.141 4.141 19 C 0.071 3.929 20 O -0.376 6.376 21 C 0.070 3.930 22 C 0.008 3.992 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.263 0.737 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -5.488 15.517 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.258 3.742 14 O -0.418 6.418 15 C -0.098 4.098 16 N -0.232 5.232 17 C -0.075 4.075 18 C -0.180 4.180 19 C -0.007 4.007 20 O -0.294 6.294 21 C -0.007 4.007 22 C -0.119 4.119 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.139 -4.848 15.772 17.282 hybrid contribution 0.997 -0.185 -1.390 1.720 sum -4.142 -5.033 14.383 15.791 Atomic orbital electron populations 1.22211 0.96761 1.01454 1.02233 1.21421 0.93521 0.84236 1.02698 1.48380 1.63208 1.13192 1.07966 1.19246 0.96217 0.93574 0.78312 1.21408 0.96899 1.31888 1.06219 0.92613 1.24935 0.97847 0.94897 0.96412 1.69938 1.35696 1.33457 1.14277 0.86505 0.84680 0.77697 0.78590 1.20619 1.21062 1.19939 1.21534 0.78860 0.87586 0.86232 1.90657 1.46016 1.18097 1.87015 1.22489 1.03127 0.96648 0.87489 1.62042 1.03892 1.17192 1.40041 1.21928 0.88424 1.01650 0.95496 1.22722 0.98474 1.00631 0.96141 1.22126 0.93221 0.90435 0.94888 1.87740 1.27430 1.32645 1.81567 1.21689 0.85362 0.98759 0.94879 1.21837 0.97099 0.94209 0.98798 0.92099 0.93147 0.92090 0.89975 0.91693 0.95183 0.94056 0.92723 0.88341 0.88576 0.91233 0.92245 0.91674 0.91613 0.91298 0.93016 0.89183 0.92734 0.90973 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.63 5.93 -4.05 -0.02 1.61 16 3 N -0.60 -12.24 2.46 -175.07 -0.43 -12.66 16 4 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 5 C -0.53 -14.87 9.39 -34.44 -0.32 -15.19 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.47 9.44 6.91 -10.99 -0.08 9.36 16 14 O -0.54 -12.97 11.88 5.55 0.07 -12.91 16 15 C 0.03 0.50 4.14 -4.98 -0.02 0.48 16 16 N -0.51 -7.54 4.48 -240.54 -1.08 -8.62 16 17 C 0.05 0.88 3.95 -4.47 -0.02 0.87 16 18 C -0.14 -1.86 6.52 -25.05 -0.16 -2.03 16 19 C 0.07 0.88 6.20 37.98 0.24 1.11 16 20 O -0.38 -5.41 10.39 -32.69 -0.34 -5.75 16 21 C 0.07 0.86 6.38 33.96 0.22 1.08 16 22 C 0.01 0.12 4.49 -6.53 -0.03 0.09 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 27 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 28 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 29 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.10 1.32 7.38 -51.93 -0.38 0.93 16 32 H 0.10 1.19 6.94 -51.93 -0.36 0.83 16 33 H 0.07 1.38 5.92 -51.93 -0.31 1.07 16 34 H 0.06 1.05 7.35 -51.93 -0.38 0.66 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.59 7.25 -51.93 -0.38 0.22 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.59 7.46 -51.93 -0.39 0.20 16 41 H 0.07 0.94 7.69 -51.93 -0.40 0.54 16 42 H 0.07 1.33 5.90 -51.93 -0.31 1.02 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -32.62 326.20 -8.01 -40.63 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.92 Total: -0.20 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 0.05 Total: 3.60 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.77 Total: -47.23 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.27 Total: -18.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.62 -8.01 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363378240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.364 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds