Wall clock time and date at job start Mon Mar 30 2020 00:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47177 * 2 1 4 4 C 1.46500 * 120.00063 * 269.99891 * 3 2 1 5 5 C 1.50698 * 109.47288 * 270.00216 * 4 3 2 6 6 H 1.08001 * 120.00088 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00528 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99329 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00548 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47186 * 89.99831 * 9 7 5 11 11 H 1.48499 * 109.47307 * 209.99675 * 9 7 5 12 12 H 1.48497 * 109.47131 * 330.00285 * 9 7 5 13 13 C 1.34773 * 120.00016 * 90.00191 * 3 2 1 14 14 O 1.21286 * 120.00116 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00217 * 359.97438 * 13 3 2 16 16 N 1.46900 * 109.47266 * 180.02562 * 15 13 3 17 17 C 1.44086 * 110.95701 * 304.15323 * 16 15 13 18 18 C 1.54621 * 112.40171 * 217.23736 * 17 16 15 19 19 C 1.54570 * 110.90175 * 319.60613 * 18 17 16 20 20 O 1.39908 * 113.22641 * 319.28778 * 19 18 17 21 21 C 1.44516 * 112.80898 * 94.90115 * 20 19 18 22 22 C 1.46264 * 111.30878 * 280.44738 * 21 20 19 23 23 H 1.09003 * 109.47211 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47241 * 300.00084 * 1 2 3 25 25 H 1.08997 * 109.47356 * 60.00399 * 1 2 3 26 26 H 1.08998 * 109.47294 * 239.99396 * 2 1 3 27 27 H 1.09006 * 109.47172 * 119.99685 * 2 1 3 28 28 H 1.09000 * 109.47174 * 29.99746 * 4 3 2 29 29 H 1.08998 * 109.47172 * 149.99869 * 4 3 2 30 30 H 0.97011 * 119.99578 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47100 * 60.00049 * 15 13 3 32 32 H 1.09006 * 109.47104 * 299.99962 * 15 13 3 33 33 H 1.09005 * 108.92695 * 96.48224 * 17 16 15 34 34 H 1.09004 * 108.91598 * 337.98525 * 17 16 15 35 35 H 1.09005 * 109.19208 * 199.23838 * 18 17 16 36 36 H 1.09001 * 109.15366 * 79.94944 * 18 17 16 37 37 H 1.09002 * 108.73195 * 198.32431 * 19 18 17 38 38 H 1.09001 * 108.73529 * 80.25859 * 19 18 17 39 39 H 1.08992 * 109.11631 * 159.97195 * 21 20 19 40 40 H 1.09002 * 109.11071 * 40.91470 * 21 20 19 41 41 H 1.09002 * 108.91614 * 180.21609 * 22 21 20 42 42 H 1.08997 * 108.91280 * 298.85479 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3895 -2.8779 8 7 3.3488 3.1248 -3.6186 9 14 5.9135 2.0965 -3.4169 10 1 5.9775 0.8751 -4.2591 11 1 6.3921 3.2637 -4.2004 12 1 6.7736 1.9177 -2.2196 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3091 2.2065 3.5888 17 6 3.6619 2.6924 3.4901 18 6 4.3459 2.8161 4.8713 19 6 3.3630 3.3750 5.9253 20 8 2.5550 4.4062 5.4342 21 6 1.2717 3.9368 4.9638 22 6 1.3768 3.3529 3.6268 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.5817 1.6877 -2.0284 29 1 2.0955 3.1410 -1.1384 30 1 3.6747 3.5147 -4.4449 31 1 2.6211 0.4186 2.5302 32 1 0.9431 1.0126 2.5299 33 1 3.6518 3.6722 3.0125 34 1 4.2395 2.0062 2.8707 35 1 5.2018 3.4861 4.7886 36 1 4.6907 1.8321 5.1891 37 1 3.9356 3.7523 6.7725 38 1 2.7230 2.5637 6.2720 39 1 0.5745 4.7740 4.9338 40 1 0.8928 3.1827 5.6537 41 1 0.3898 3.0164 3.3096 42 1 1.7286 4.1174 2.9341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363378240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:01 Heat of formation + Delta-G solvation = -91.947989 kcal Electronic energy + Delta-G solvation = -22216.029213 eV Core-core repulsion = 19002.600980 eV Total energy + Delta-G solvation = -3213.428233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50892 -39.89766 -37.48032 -36.46971 -34.94588 -33.61756 -31.71148 -31.13695 -29.20664 -27.53334 -26.33487 -24.71938 -23.96454 -22.61510 -21.57689 -19.86563 -18.67645 -18.10587 -17.83826 -17.24949 -16.96807 -16.69750 -16.29587 -15.96112 -15.82025 -14.89383 -14.81039 -14.59598 -14.53108 -14.09131 -13.93034 -13.62630 -13.30323 -13.14631 -13.00483 -12.84808 -12.64384 -12.55989 -12.44612 -12.17132 -12.02027 -11.85952 -11.78402 -11.65261 -11.27592 -11.10732 -10.68234 -10.50500 -9.44434 -9.30921 -8.26367 -6.41508 1.32041 1.35231 1.45246 1.79798 2.28229 2.43656 2.81517 3.02456 3.02962 3.71349 3.90311 4.08650 4.11497 4.15440 4.25311 4.33275 4.41447 4.43323 4.48944 4.55971 4.64492 4.69975 4.80942 4.92171 4.93301 4.97502 5.03776 5.05192 5.08913 5.13932 5.17959 5.23746 5.38507 5.54585 5.80454 5.87868 5.95546 6.03168 6.41358 6.66409 6.79571 7.24930 7.47303 8.80496 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.005409 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.240559 B = 5175.531194 C = 5923.686360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.462 3.538 14 O -0.591 6.591 15 C 0.044 3.956 16 N -0.492 5.492 17 C 0.061 3.939 18 C -0.137 4.137 19 C 0.068 3.932 20 O -0.400 6.400 21 C 0.068 3.932 22 C 0.012 3.988 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.018 0.982 29 H -0.008 1.008 30 H 0.267 0.733 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.023 0.977 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -7.938 17.666 20.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.250 3.750 14 O -0.472 6.472 15 C -0.087 4.087 16 N -0.214 5.214 17 C -0.068 4.068 18 C -0.175 4.175 19 C -0.009 4.009 20 O -0.319 6.319 21 C -0.008 4.008 22 C -0.116 4.116 23 H 0.115 0.885 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.036 0.964 29 H 0.010 0.990 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -5.346 -7.344 17.943 20.111 hybrid contribution 1.020 0.597 -2.075 2.387 sum -4.327 -6.748 15.868 17.778 Atomic orbital electron populations 1.22144 0.94439 1.03581 1.01616 1.21766 0.95406 0.81265 1.03953 1.48428 1.63518 1.15118 1.06320 1.18632 0.95114 0.91297 0.80779 1.21684 0.97897 1.31925 1.06448 0.93086 1.25867 1.02398 0.94454 0.96472 1.70061 1.37799 1.34264 1.14752 0.85425 0.78962 0.78291 0.78195 1.18576 1.20662 1.19918 1.22649 0.77484 0.87197 0.87644 1.90660 1.48063 1.20635 1.87855 1.22672 1.05762 0.96463 0.83781 1.62215 1.03071 1.17076 1.39052 1.21809 0.89477 0.98591 0.96963 1.22720 0.98367 1.01968 0.94488 1.22270 0.93264 0.90664 0.94736 1.87725 1.28461 1.34034 1.81696 1.21808 0.85065 0.99988 0.93892 1.21864 0.97431 0.92998 0.99305 0.88497 0.91852 0.94655 0.91290 0.87842 0.96360 0.99033 0.92428 0.85921 0.84994 0.95883 0.94055 0.92202 0.89335 0.89377 0.91393 0.87800 0.89965 0.89194 0.95548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 10.24 71.98 0.74 -2.98 16 2 C 0.10 2.87 5.93 86.38 0.51 3.39 16 3 N -0.60 -25.16 2.46 -826.17 -2.03 -27.19 16 4 C 0.26 14.42 5.16 85.63 0.44 14.86 16 5 C -0.54 -31.67 9.39 25.60 0.24 -31.43 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 9 Si 0.97 45.67 29.54 68.60 2.03 47.69 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.46 18.73 6.91 87.66 0.61 19.34 16 14 O -0.59 -30.16 11.88 -3.05 -0.04 -30.20 16 15 C 0.04 1.20 4.14 85.56 0.35 1.55 16 16 N -0.49 -13.80 4.48 -914.94 -4.10 -17.90 16 17 C 0.06 2.01 3.95 87.38 0.35 2.36 16 18 C -0.14 -3.44 6.52 31.68 0.21 -3.23 16 19 C 0.07 1.52 6.20 72.52 0.45 1.96 16 20 O -0.40 -11.05 10.39 -139.87 -1.45 -12.50 16 21 C 0.07 1.56 6.38 69.91 0.45 2.01 16 22 C 0.01 0.33 4.49 84.05 0.38 0.71 16 23 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.06 1.31 7.22 -2.39 -0.02 1.30 16 25 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 27 H 0.10 2.24 6.44 -2.38 -0.02 2.22 16 28 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 29 H -0.01 -0.54 7.42 -2.39 -0.02 -0.56 16 30 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 31 H 0.12 2.81 7.38 -2.39 -0.02 2.79 16 32 H 0.13 2.69 6.94 -2.38 -0.02 2.67 16 33 H 0.02 0.97 5.92 -2.38 -0.01 0.96 16 34 H 0.04 1.47 7.35 -2.38 -0.02 1.45 16 35 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.29 7.25 -2.39 -0.02 1.28 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 1.45 7.46 -2.39 -0.02 1.44 16 41 H 0.09 2.18 7.69 -2.39 -0.02 2.16 16 42 H 0.03 1.01 5.90 -2.39 -0.01 0.99 16 Total: -1.00 -76.73 326.20 0.86 -75.87 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.99 Total: 11.73 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.18 Total: 9.41 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.84 Total: -102.00 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -1.49 Total: -42.70 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -76.73 0.86 -75.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363378240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.079 kcal (2) G-P(sol) polarization free energy of solvation -76.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds