Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99814 * 2 1 4 4 C 1.52999 * 109.47313 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46911 * 65.48427 * 4 3 2 6 6 C 1.46497 * 120.00103 * 88.07355 * 5 4 3 7 7 C 1.50704 * 109.47040 * 276.09638 * 6 5 4 8 8 H 1.07999 * 119.99735 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99852 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00164 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47487 * 270.00151 * 11 9 7 13 13 H 1.48503 * 109.47225 * 30.00346 * 11 9 7 14 14 H 1.48496 * 109.47387 * 150.00010 * 11 9 7 15 15 C 1.34775 * 120.00019 * 268.07508 * 5 4 3 16 16 O 1.21285 * 120.00161 * 4.46442 * 15 5 4 17 17 C 1.50700 * 120.00191 * 184.47425 * 15 5 4 18 18 H 1.09003 * 110.63845 * 312.68889 * 17 15 5 19 19 C 1.54594 * 110.72524 * 189.54523 * 17 15 5 20 20 C 1.53997 * 105.14050 * 219.67978 * 19 17 15 21 21 N 1.47907 * 107.05703 * 358.77223 * 20 19 17 22 22 C 1.46898 * 110.99894 * 145.84332 * 21 20 19 23 23 C 1.48732 * 105.93993 * 25.20080 * 21 20 19 24 24 H 1.09005 * 109.47246 * 59.99772 * 1 2 3 25 25 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47299 * 300.00155 * 1 2 3 27 27 H 1.08999 * 109.47580 * 59.99993 * 3 2 1 28 28 H 1.08996 * 109.47573 * 300.00059 * 3 2 1 29 29 H 1.09003 * 109.47324 * 305.48574 * 4 3 2 30 30 H 1.09000 * 109.47504 * 185.48194 * 4 3 2 31 31 H 1.08999 * 109.47179 * 156.10111 * 6 5 4 32 32 H 1.08999 * 109.47357 * 36.09538 * 6 5 4 33 33 H 0.96996 * 120.00298 * 0.02562 * 10 9 7 34 34 H 1.09004 * 110.30647 * 338.59046 * 19 17 15 35 35 H 1.09002 * 110.31474 * 100.76646 * 19 17 15 36 36 H 1.09004 * 109.92020 * 118.12353 * 20 19 17 37 37 H 1.08995 * 109.91953 * 239.22434 * 20 19 17 38 38 H 1.08998 * 109.47268 * 60.13072 * 22 21 20 39 39 H 1.09005 * 109.46580 * 180.12937 * 22 21 20 40 40 H 1.08997 * 109.47437 * 300.12454 * 22 21 20 41 41 H 1.09006 * 110.83856 * 202.57358 * 23 21 20 42 42 H 1.09002 * 110.58658 * 79.39046 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9774 0.5747 -1.2558 6 6 4.2491 1.4169 -2.4233 7 6 2.9601 1.6955 -3.1526 8 1 2.0314 1.2865 -2.7831 9 6 2.9663 2.4734 -4.2909 10 7 4.0973 2.9719 -4.7405 11 14 1.3685 2.8194 -5.1945 12 1 1.1391 1.7658 -6.2156 13 1 0.2429 2.8235 -4.2259 14 1 1.4532 4.1440 -5.8604 15 6 4.1341 -0.7615 -1.3376 16 8 3.8322 -1.4662 -0.3978 17 6 4.6847 -1.3799 -2.5968 18 1 4.1825 -0.9746 -3.4752 19 6 4.5528 -2.9196 -2.5530 20 6 5.8585 -3.4529 -3.1711 21 7 6.6629 -2.2767 -3.5677 22 6 8.0982 -2.5388 -3.3971 23 6 6.2157 -1.1616 -2.6909 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8899 29 1 3.8502 0.5615 0.8377 30 1 3.9783 2.1759 0.0988 31 1 4.9399 0.9012 -3.0904 32 1 4.6928 2.3576 -2.0973 33 1 4.9271 2.7920 -4.2715 34 1 4.4546 -3.2617 -1.5227 35 1 3.6953 -3.2428 -3.1432 36 1 6.4034 -4.0443 -2.4352 37 1 5.6332 -4.0640 -4.0451 38 1 8.3895 -3.3849 -4.0194 39 1 8.6662 -1.6569 -3.6937 40 1 8.3039 -2.7687 -2.3517 41 1 6.4395 -0.1967 -3.1460 42 1 6.6767 -1.2397 -1.7062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395287045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -76.040835 kcal Electronic energy + Delta-G solvation = -22392.778454 eV Core-core repulsion = 19180.040006 eV Total energy + Delta-G solvation = -3212.738447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75672 -37.94159 -36.97542 -35.07564 -32.78262 -31.98996 -29.94013 -28.43759 -26.64846 -25.96317 -25.48072 -23.11137 -22.68493 -21.02758 -20.63858 -18.26311 -17.19130 -16.78750 -16.01063 -15.64709 -15.40858 -15.00070 -14.69682 -14.23107 -14.08466 -13.80280 -13.62008 -13.25608 -12.85366 -12.68922 -12.36478 -12.17440 -11.80227 -11.61916 -11.42946 -11.32000 -11.22544 -11.07444 -10.82435 -10.80757 -10.66198 -10.42050 -10.22583 -10.17706 -9.20535 -9.12881 -8.93502 -8.47339 -8.27756 -7.63284 -6.47600 -4.23269 3.36605 3.38824 3.42052 3.54785 3.81212 4.25437 4.36227 4.43864 4.90586 4.98502 5.22549 5.27097 5.41118 5.47543 5.52545 5.54585 5.65019 5.66078 5.76322 5.79417 5.84083 5.85721 5.89896 5.95513 5.97970 6.06310 6.13142 6.26580 6.39460 6.46282 6.56769 6.65666 6.87608 7.00986 7.14959 7.44244 7.72185 7.90405 8.19528 8.46879 8.70212 9.04908 9.47400 10.87890 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.007994 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.500010 B = 3501.873154 C = 4820.772120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C 0.041 3.959 4 C 0.128 3.872 5 N -0.590 5.590 6 C 0.223 3.777 7 C -0.613 4.613 8 H 0.058 0.942 9 C 0.024 3.976 10 N -0.905 5.905 11 Si 1.068 2.932 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.529 3.471 16 O -0.554 6.554 17 C -0.108 4.108 18 H 0.115 0.885 19 C -0.119 4.119 20 C 0.038 3.962 21 N -0.521 5.521 22 C 0.017 3.983 23 C 0.052 3.948 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.020 0.980 33 H 0.269 0.731 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.092 0.908 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -6.419 5.411 8.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C -0.036 4.036 4 C 0.004 3.996 5 N -0.320 5.320 6 C 0.102 3.898 7 C -0.652 4.652 8 H 0.076 0.924 9 C -0.181 4.181 10 N -0.541 5.541 11 Si 0.897 3.103 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.316 3.684 16 O -0.433 6.433 17 C -0.130 4.130 18 H 0.133 0.867 19 C -0.157 4.157 20 C -0.090 4.090 21 N -0.245 5.245 22 C -0.132 4.132 23 C -0.075 4.075 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.110 0.890 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.865 -6.019 4.038 7.299 hybrid contribution 0.466 -0.546 2.028 2.152 sum 1.331 -6.565 6.066 9.037 Atomic orbital electron populations 1.22633 0.82663 1.01832 0.99205 1.88065 1.18112 1.27353 1.95208 1.23092 0.94866 0.85246 1.00435 1.21241 0.92372 0.98287 0.87653 1.47865 1.65103 1.06346 1.12704 1.19617 0.97612 0.89668 0.82881 1.22369 0.94149 1.35811 1.12860 0.92399 1.25752 1.03660 0.93365 0.95363 1.70793 0.98977 1.43005 1.41292 0.83535 0.74067 0.76895 0.75832 1.21257 1.21617 1.20917 1.20097 0.77730 0.82156 0.88430 1.90587 1.51830 1.61076 1.39786 1.22128 0.96222 0.96064 0.98588 0.86698 1.22356 0.97069 0.93822 1.02445 1.22881 0.94129 0.93056 0.98936 1.64735 1.03676 1.05026 1.51019 1.22498 0.89279 1.02038 0.99339 1.23208 0.93312 0.95915 0.95102 0.94412 0.90437 0.95067 0.94232 0.91028 0.90578 0.89960 0.94516 0.96177 0.92106 0.89634 0.90939 0.94027 0.90448 0.91467 0.91251 0.95654 0.88962 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.37 -7.47 9.55 -43.18 -0.41 -7.88 16 3 C 0.04 0.77 6.11 37.16 0.23 1.00 16 4 C 0.13 2.42 5.87 -4.04 -0.02 2.40 16 5 N -0.59 -12.51 2.45 -175.06 -0.43 -12.94 16 6 C 0.22 5.14 4.26 -5.19 -0.02 5.12 16 7 C -0.61 -15.83 8.56 -34.44 -0.29 -16.13 16 8 H 0.06 1.56 6.62 -52.49 -0.35 1.21 16 9 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 10 N -0.91 -25.40 13.65 55.43 0.76 -24.65 16 11 Si 1.07 24.16 29.90 -169.99 -5.08 19.07 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.53 11.29 6.67 -10.99 -0.07 11.22 16 16 O -0.55 -12.83 14.20 -2.40 -0.03 -12.86 16 17 C -0.11 -2.07 2.40 -89.92 -0.22 -2.29 16 18 H 0.11 2.46 7.39 -51.93 -0.38 2.08 16 19 C -0.12 -1.99 6.40 -25.37 -0.16 -2.15 16 20 C 0.04 0.55 6.70 -2.75 -0.02 0.53 16 21 N -0.52 -8.15 5.55 -238.54 -1.32 -9.48 16 22 C 0.02 0.22 9.40 60.06 0.56 0.78 16 23 C 0.05 0.90 5.63 -1.79 -0.01 0.89 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.48 6.20 -51.93 -0.32 1.16 16 29 H 0.08 1.43 7.43 -51.93 -0.39 1.04 16 30 H 0.08 1.38 7.98 -51.93 -0.41 0.97 16 31 H 0.04 0.86 4.47 -51.93 -0.23 0.63 16 32 H 0.02 0.48 7.86 -51.93 -0.41 0.07 16 33 H 0.27 7.40 7.22 -40.82 -0.29 7.11 16 34 H 0.09 1.52 6.77 -51.93 -0.35 1.17 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.55 7.73 -51.93 -0.40 0.15 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.30 8.01 -51.93 -0.42 -0.11 16 41 H 0.09 1.65 6.69 -51.93 -0.35 1.31 16 42 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -30.33 332.47 -7.42 -37.75 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.89 Total: 2.41 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 0.99 Total: 3.56 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -1.00 Total: -47.06 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.45 Total: -20.74 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.33 -7.42 -37.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395287045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.295 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds