Wall clock time and date at job start Mon Mar 30 2020 01:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99814 * 2 1 4 4 C 1.52999 * 109.47313 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46911 * 65.48427 * 4 3 2 6 6 C 1.46497 * 120.00103 * 88.07355 * 5 4 3 7 7 C 1.50704 * 109.47040 * 276.09638 * 6 5 4 8 8 H 1.07999 * 119.99735 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99852 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00164 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47487 * 270.00151 * 11 9 7 13 13 H 1.48503 * 109.47225 * 30.00346 * 11 9 7 14 14 H 1.48496 * 109.47387 * 150.00010 * 11 9 7 15 15 C 1.34775 * 120.00019 * 268.07508 * 5 4 3 16 16 O 1.21285 * 120.00161 * 4.46442 * 15 5 4 17 17 C 1.50700 * 120.00191 * 184.47425 * 15 5 4 18 18 H 1.09003 * 110.63845 * 312.68889 * 17 15 5 19 19 C 1.54594 * 110.72524 * 189.54523 * 17 15 5 20 20 C 1.53997 * 105.14050 * 219.67978 * 19 17 15 21 21 N 1.47907 * 107.05703 * 358.77223 * 20 19 17 22 22 C 1.46898 * 110.99894 * 145.84332 * 21 20 19 23 23 C 1.48732 * 105.93993 * 25.20080 * 21 20 19 24 24 H 1.09005 * 109.47246 * 59.99772 * 1 2 3 25 25 H 1.09004 * 109.46946 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47299 * 300.00155 * 1 2 3 27 27 H 1.08999 * 109.47580 * 59.99993 * 3 2 1 28 28 H 1.08996 * 109.47573 * 300.00059 * 3 2 1 29 29 H 1.09003 * 109.47324 * 305.48574 * 4 3 2 30 30 H 1.09000 * 109.47504 * 185.48194 * 4 3 2 31 31 H 1.08999 * 109.47179 * 156.10111 * 6 5 4 32 32 H 1.08999 * 109.47357 * 36.09538 * 6 5 4 33 33 H 0.96996 * 120.00298 * 0.02562 * 10 9 7 34 34 H 1.09004 * 110.30647 * 338.59046 * 19 17 15 35 35 H 1.09002 * 110.31474 * 100.76646 * 19 17 15 36 36 H 1.09004 * 109.92020 * 118.12353 * 20 19 17 37 37 H 1.08995 * 109.91953 * 239.22434 * 20 19 17 38 38 H 1.08998 * 109.47268 * 60.13072 * 22 21 20 39 39 H 1.09005 * 109.46580 * 180.12937 * 22 21 20 40 40 H 1.08997 * 109.47437 * 300.12454 * 22 21 20 41 41 H 1.09006 * 110.83856 * 202.57358 * 23 21 20 42 42 H 1.09002 * 110.58658 * 79.39046 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9774 0.5747 -1.2558 6 6 4.2491 1.4169 -2.4233 7 6 2.9601 1.6955 -3.1526 8 1 2.0314 1.2865 -2.7831 9 6 2.9663 2.4734 -4.2909 10 7 4.0973 2.9719 -4.7405 11 14 1.3685 2.8194 -5.1945 12 1 1.1391 1.7658 -6.2156 13 1 0.2429 2.8235 -4.2259 14 1 1.4532 4.1440 -5.8604 15 6 4.1341 -0.7615 -1.3376 16 8 3.8322 -1.4662 -0.3978 17 6 4.6847 -1.3799 -2.5968 18 1 4.1825 -0.9746 -3.4752 19 6 4.5528 -2.9196 -2.5530 20 6 5.8585 -3.4529 -3.1711 21 7 6.6629 -2.2767 -3.5677 22 6 8.0982 -2.5388 -3.3971 23 6 6.2157 -1.1616 -2.6909 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8464 -0.8899 29 1 3.8502 0.5615 0.8377 30 1 3.9783 2.1759 0.0988 31 1 4.9399 0.9012 -3.0904 32 1 4.6928 2.3576 -2.0973 33 1 4.9271 2.7920 -4.2715 34 1 4.4546 -3.2617 -1.5227 35 1 3.6953 -3.2428 -3.1432 36 1 6.4034 -4.0443 -2.4352 37 1 5.6332 -4.0640 -4.0451 38 1 8.3895 -3.3849 -4.0194 39 1 8.6662 -1.6569 -3.6937 40 1 8.3039 -2.7687 -2.3517 41 1 6.4395 -0.1967 -3.1460 42 1 6.6767 -1.2397 -1.7062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395287045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:33 Heat of formation + Delta-G solvation = -96.452853 kcal Electronic energy + Delta-G solvation = -22393.663585 eV Core-core repulsion = 19180.040006 eV Total energy + Delta-G solvation = -3213.623579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33180 -39.33855 -38.45440 -36.86112 -34.71978 -33.34905 -31.40064 -29.83264 -28.53805 -27.27962 -26.70677 -24.96975 -24.26922 -22.42717 -21.95271 -19.95144 -19.06711 -18.39674 -17.51218 -17.03820 -16.96441 -16.47282 -16.17283 -15.72086 -15.53512 -15.41858 -15.06597 -14.66658 -14.46800 -14.22324 -13.83721 -13.59838 -13.44137 -13.25463 -13.01400 -12.58207 -12.54918 -12.48333 -12.39421 -12.27447 -12.20503 -11.99335 -11.91387 -11.63231 -11.10478 -10.74340 -10.58283 -10.43370 -9.48626 -9.42018 -8.57705 -6.35102 1.53764 1.59661 1.72498 1.77578 2.23116 2.55911 2.93649 3.03853 3.17655 3.56190 3.63407 3.79710 4.14169 4.17455 4.18977 4.26477 4.36665 4.43790 4.48008 4.49270 4.50460 4.52133 4.57402 4.59014 4.72611 4.76664 4.78491 4.90007 4.96051 4.97569 5.01841 5.07225 5.18267 5.69560 5.78249 5.89269 6.02079 6.18248 6.32432 6.54165 6.69683 7.31275 7.44428 8.76965 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.007994 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.500010 B = 3501.873154 C = 4820.772120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.046 3.954 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.235 3.765 7 C -0.612 4.612 8 H 0.045 0.955 9 C -0.018 4.018 10 N -0.928 5.928 11 Si 1.107 2.893 12 H -0.278 1.278 13 H -0.277 1.277 14 H -0.281 1.281 15 C 0.524 3.476 16 O -0.573 6.573 17 C -0.110 4.110 18 H 0.088 0.912 19 C -0.114 4.114 20 C 0.044 3.956 21 N -0.535 5.535 22 C 0.016 3.984 23 C 0.063 3.937 24 H 0.031 0.969 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.034 0.966 32 H 0.015 0.985 33 H 0.261 0.739 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.079 0.921 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.466 -7.124 5.651 9.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C -0.032 4.032 4 C -0.003 4.003 5 N -0.322 5.322 6 C 0.114 3.886 7 C -0.650 4.650 8 H 0.063 0.937 9 C -0.218 4.218 10 N -0.565 5.565 11 Si 0.930 3.070 12 H -0.204 1.204 13 H -0.202 1.202 14 H -0.207 1.207 15 C 0.313 3.687 16 O -0.453 6.453 17 C -0.131 4.131 18 H 0.106 0.894 19 C -0.153 4.153 20 C -0.084 4.084 21 N -0.259 5.259 22 C -0.132 4.132 23 C -0.066 4.066 24 H 0.050 0.950 25 H 0.107 0.893 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.097 0.903 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.737 -6.731 4.296 8.019 hybrid contribution 0.498 -0.353 2.013 2.104 sum 1.235 -7.084 6.309 9.566 Atomic orbital electron populations 1.22813 0.80697 1.03012 1.00181 1.88016 1.20438 1.28189 1.95416 1.23034 0.94427 0.84941 1.00777 1.21487 0.93032 0.99184 0.86566 1.47893 1.65050 1.06346 1.12918 1.19340 0.96398 0.89561 0.83335 1.22522 0.94559 1.35092 1.12863 0.93703 1.26888 1.05456 0.93193 0.96292 1.70890 0.99261 1.44464 1.41923 0.83031 0.71587 0.76963 0.75415 1.20425 1.20235 1.20690 1.20462 0.77316 0.82078 0.88887 1.90565 1.52722 1.61336 1.40704 1.22077 0.97287 0.97579 0.96206 0.89407 1.22334 0.98834 0.91953 1.02160 1.22899 0.92762 0.92773 0.99961 1.64741 1.05595 1.04912 1.50687 1.22589 0.87258 1.03069 1.00298 1.23028 0.91846 0.96251 0.95435 0.94999 0.89272 0.92414 0.90855 0.93517 0.90411 0.88044 0.94812 0.96702 0.92905 0.90652 0.90568 0.92351 0.88723 0.89408 0.90971 0.94934 0.90289 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.14 16 2 O -0.40 -15.97 9.55 -141.38 -1.35 -17.32 16 3 C 0.05 1.67 6.11 71.98 0.44 2.11 16 4 C 0.12 4.48 5.87 86.38 0.51 4.99 16 5 N -0.59 -25.30 2.45 -826.15 -2.03 -27.33 16 6 C 0.23 11.02 4.26 85.64 0.37 11.39 16 7 C -0.61 -31.92 8.56 25.60 0.22 -31.70 16 8 H 0.04 2.44 6.62 -2.91 -0.02 2.42 16 9 C -0.02 -0.97 5.46 84.65 0.46 -0.51 16 10 N -0.93 -52.51 13.65 21.45 0.29 -52.22 16 11 Si 1.11 48.35 29.90 68.60 2.05 50.40 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 14 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 15 C 0.52 22.59 6.67 87.66 0.58 23.17 16 16 O -0.57 -26.57 14.20 4.56 0.06 -26.51 16 17 C -0.11 -4.23 2.40 -10.34 -0.02 -4.26 16 18 H 0.09 3.87 7.39 -2.39 -0.02 3.85 16 19 C -0.11 -3.76 6.40 31.47 0.20 -3.56 16 20 C 0.04 1.18 6.70 86.45 0.58 1.76 16 21 N -0.53 -15.96 5.55 -908.59 -5.04 -21.00 16 22 C 0.02 0.37 9.40 127.69 1.20 1.57 16 23 C 0.06 2.14 5.63 86.61 0.49 2.63 16 24 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.05 1.93 6.20 -2.39 -0.01 1.91 16 29 H 0.08 2.88 7.43 -2.39 -0.02 2.86 16 30 H 0.10 3.31 7.98 -2.39 -0.02 3.29 16 31 H 0.03 1.62 4.47 -2.39 -0.01 1.61 16 32 H 0.02 0.72 7.86 -2.39 -0.02 0.70 16 33 H 0.26 14.67 7.22 -92.71 -0.67 14.00 16 34 H 0.07 2.64 6.77 -2.39 -0.02 2.62 16 35 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.06 1.39 7.73 -2.38 -0.02 1.37 16 37 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.03 0.70 8.01 -2.39 -0.02 0.68 16 41 H 0.08 2.88 6.69 -2.38 -0.02 2.87 16 42 H 0.05 1.51 7.87 -2.39 -0.02 1.49 16 Total: -1.00 -64.33 332.47 1.35 -62.97 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 1.09 Total: 21.28 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.27 Total: 9.72 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -6.77 Total: -100.55 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -1.28 Total: -43.83 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.05 Total: 50.40 kcal Total: -64.33 1.35 -62.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395287045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.478 kcal (2) G-P(sol) polarization free energy of solvation -64.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds