Wall clock time and date at job start Mon Mar 30 2020 01:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34766 * 120.00138 * 2 1 4 4 O 1.21588 * 120.00034 * 179.97438 * 3 2 1 5 5 N 1.34781 * 120.00160 * 0.02562 * 3 2 1 6 6 C 1.46500 * 119.99988 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.46902 * 179.97438 * 6 5 3 8 8 H 1.07999 * 119.99834 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00036 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00142 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46934 * 90.00079 * 11 9 7 13 13 H 1.48501 * 109.47124 * 209.99876 * 11 9 7 14 14 H 1.48499 * 109.46989 * 329.99795 * 11 9 7 15 15 C 1.46501 * 119.99504 * 180.02562 * 2 1 3 16 16 C 1.52999 * 109.47444 * 359.23121 * 15 2 1 17 17 C 1.52990 * 109.47400 * 300.00229 * 16 15 2 18 18 C 1.53003 * 109.47463 * 299.99897 * 17 16 15 19 19 C 1.53001 * 109.47221 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46940 * 174.99787 * 19 18 17 21 21 C 1.53005 * 109.46750 * 60.00014 * 18 17 16 22 22 C 1.53001 * 109.47058 * 299.99854 * 21 18 17 23 23 H 1.08997 * 109.47449 * 275.93266 * 1 2 3 24 24 H 1.09008 * 109.46691 * 35.93054 * 1 2 3 25 25 H 1.09003 * 109.47230 * 155.92692 * 1 2 3 26 26 H 0.96996 * 119.99987 * 359.97438 * 5 3 2 27 27 H 1.09005 * 109.47047 * 299.99596 * 6 5 3 28 28 H 1.08999 * 109.47428 * 59.99541 * 6 5 3 29 29 H 0.96999 * 120.00482 * 179.97438 * 10 9 7 30 30 H 1.08993 * 109.47314 * 119.23910 * 15 2 1 31 31 H 1.08999 * 109.46818 * 179.97438 * 16 15 2 32 32 H 1.09003 * 109.46768 * 60.00685 * 16 15 2 33 33 H 1.09000 * 109.47295 * 179.97438 * 17 16 15 34 34 H 1.09003 * 109.47000 * 60.00226 * 17 16 15 35 35 H 1.08996 * 109.46688 * 299.99964 * 18 17 16 36 36 H 1.09000 * 109.47155 * 295.00001 * 19 18 17 37 37 H 1.09004 * 109.46931 * 55.00112 * 19 18 17 38 38 H 0.96698 * 114.00000 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47070 * 60.00534 * 21 18 17 40 40 H 1.09001 * 109.46511 * 180.02562 * 21 18 17 41 41 H 1.09000 * 109.47025 * 300.00496 * 22 21 18 42 42 H 1.08992 * 109.47026 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3344 0.0005 6 6 2.1976 3.6031 0.0000 7 6 1.2184 4.7485 0.0001 8 1 0.1566 4.5511 0.0001 9 6 1.6780 6.0484 -0.0009 10 7 2.9710 6.2887 -0.0015 11 14 0.4641 7.4683 -0.0015 12 1 0.1429 7.8455 1.3985 13 1 1.0639 8.6320 -0.7025 14 1 -0.7793 7.0562 -0.7009 15 6 2.1974 -1.2688 -0.0006 16 6 1.2033 -2.4316 0.0183 17 6 0.3382 -2.3427 1.2770 18 6 1.2322 -2.4160 2.5165 19 6 0.3671 -2.3265 3.7753 20 8 1.1870 -2.5115 4.9309 21 6 2.2263 -1.2531 2.4977 22 6 3.0915 -1.3421 1.2390 23 1 -0.3634 0.1062 1.0221 24 1 -0.3633 0.8322 -0.6031 25 1 -0.3634 -0.9383 -0.4192 26 1 0.4951 2.3344 0.0005 27 1 2.8250 3.6608 0.8895 28 1 2.8237 3.6608 -0.8904 29 1 3.2944 7.2032 -0.0026 30 1 2.8138 -1.3322 -0.8973 31 1 1.7483 -3.3756 0.0174 32 1 0.5664 -2.3794 -0.8648 33 1 -0.3703 -3.1709 1.2902 34 1 -0.2068 -1.3988 1.2773 35 1 1.7771 -3.3600 2.5161 36 1 -0.1086 -1.3468 3.8203 37 1 -0.3990 -3.1013 3.7455 38 1 0.7036 -2.4676 5.7673 39 1 1.6813 -0.3092 2.4982 40 1 2.8635 -1.3056 3.3806 41 1 3.6364 -2.2861 1.2386 42 1 3.8000 -0.5139 1.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408367951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:53 Heat of formation + Delta-G solvation = -76.727366 kcal Electronic energy + Delta-G solvation = -21953.933045 eV Core-core repulsion = 18741.164827 eV Total energy + Delta-G solvation = -3212.768217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44786 -38.25160 -36.65470 -34.22385 -34.03060 -32.30851 -31.17127 -30.53270 -27.08650 -26.84331 -24.81574 -22.73718 -22.64335 -21.05198 -19.99040 -18.97013 -17.59493 -17.44360 -16.14963 -15.86755 -15.58950 -15.04769 -14.91389 -14.66049 -14.03076 -13.91803 -13.67253 -13.21704 -12.98627 -12.67790 -12.29031 -12.18365 -12.04539 -11.94391 -11.71230 -11.64636 -11.47545 -10.93036 -10.87415 -10.86358 -10.37088 -10.24802 -10.24234 -10.18166 -9.90639 -9.33010 -9.08783 -8.68340 -8.24779 -7.64924 -6.12187 -4.18565 3.25783 3.26347 3.32925 3.35885 4.00487 4.04568 4.33940 4.59093 4.71122 4.83502 4.91592 5.05976 5.15360 5.22588 5.23802 5.31089 5.43791 5.45431 5.52659 5.55945 5.61390 5.68381 5.73538 5.76283 5.89553 6.04251 6.15893 6.27543 6.43831 6.50370 6.61804 6.96934 7.23810 7.47213 7.56960 7.62002 7.62587 7.91860 8.06897 8.80712 8.98021 9.39279 9.54126 10.98101 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.004305 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.684171 B = 6502.059397 C = 6797.543874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.634 5.634 3 C 0.696 3.304 4 O -0.596 6.596 5 N -0.730 5.730 6 C 0.267 3.733 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.885 5.885 11 Si 0.903 3.097 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.172 3.828 16 C -0.122 4.122 17 C -0.140 4.140 18 C -0.084 4.084 19 C 0.080 3.920 20 O -0.572 6.572 21 C -0.102 4.102 22 C -0.138 4.138 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.385 0.615 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.265 0.735 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.376 0.624 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 -18.990 4.004 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.374 5.374 3 C 0.397 3.603 4 O -0.475 6.475 5 N -0.383 5.383 6 C 0.146 3.854 7 C -0.579 4.579 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.523 5.523 11 Si 0.730 3.270 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.068 3.932 16 C -0.160 4.160 17 C -0.177 4.177 18 C -0.102 4.102 19 C 0.002 3.998 20 O -0.377 6.377 21 C -0.140 4.140 22 C -0.176 4.176 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.219 0.781 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.222 0.778 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.294 -18.842 3.528 20.510 hybrid contribution -1.607 0.878 0.442 1.884 sum -8.901 -17.964 3.970 20.438 Atomic orbital electron populations 1.21972 0.81489 1.02785 1.00726 1.47074 1.05397 1.04869 1.80100 1.16044 0.85497 0.80305 0.78418 1.90824 1.11759 1.86199 1.58703 1.45843 1.09564 1.05707 1.77206 1.18951 0.91976 0.77006 0.97510 1.21221 0.92929 0.90762 1.52990 0.92090 1.24937 0.95363 0.98865 0.94821 1.69980 1.12546 1.20731 1.49030 0.86431 0.80847 0.81530 0.78166 1.20510 1.21026 1.19808 1.20699 0.92413 0.81769 0.98326 1.21785 0.98105 0.98200 0.97895 1.22164 0.98062 1.03775 0.93688 1.21136 0.96631 1.00184 0.92297 1.22253 0.92529 0.99105 0.85869 1.86500 1.39015 1.95843 1.16336 1.21393 0.97351 0.97415 0.97822 1.22001 0.98786 1.02979 0.93873 0.92902 0.91975 0.90277 0.78129 0.95825 0.95856 0.92501 0.91355 0.90597 0.91168 0.92147 0.89120 0.90975 0.93689 0.94099 0.77771 0.92054 0.91813 0.92018 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 7.91 59.85 0.47 1.33 16 2 N -0.63 -9.89 2.25 -179.66 -0.40 -10.30 16 3 C 0.70 14.74 7.99 -86.92 -0.69 14.05 16 4 O -0.60 -14.97 14.39 5.29 0.08 -14.89 16 5 N -0.73 -16.09 5.42 -66.41 -0.36 -16.45 16 6 C 0.27 7.28 5.43 -5.19 -0.03 7.25 16 7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 11 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.17 2.36 2.94 -67.93 -0.20 2.16 16 16 C -0.12 -1.18 4.91 -26.74 -0.13 -1.31 16 17 C -0.14 -1.27 4.54 -26.73 -0.12 -1.39 16 18 C -0.08 -0.91 2.43 -90.62 -0.22 -1.13 16 19 C 0.08 0.78 6.43 37.16 0.24 1.02 16 20 O -0.57 -6.07 13.19 -35.23 -0.46 -6.53 16 21 C -0.10 -1.42 4.94 -26.73 -0.13 -1.55 16 22 C -0.14 -2.03 5.23 -26.73 -0.14 -2.17 16 23 H 0.05 0.57 6.70 -51.93 -0.35 0.23 16 24 H 0.06 0.73 6.69 -51.92 -0.35 0.39 16 25 H 0.08 0.71 4.95 -51.93 -0.26 0.45 16 26 H 0.39 7.36 6.18 -40.82 -0.25 7.11 16 27 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.60 6.90 -51.93 -0.36 0.24 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.85 3.66 -51.93 -0.19 0.66 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.38 2.26 9.12 45.56 0.42 2.68 16 39 H 0.06 0.97 7.60 -51.93 -0.39 0.57 16 40 H 0.06 0.95 7.82 -51.93 -0.41 0.54 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.71 6.11 -51.93 -0.32 1.40 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -33.89 321.80 -7.75 -41.65 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.79 Total: 6.65 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.37 Total: 4.73 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.03 Total: -52.44 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.39 Total: -21.42 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.89 -7.75 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408367951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.081 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds