Wall clock time and date at job start Mon Mar 30 2020 01:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34766 * 120.00138 * 2 1 4 4 O 1.21588 * 120.00034 * 179.97438 * 3 2 1 5 5 N 1.34781 * 120.00160 * 0.02562 * 3 2 1 6 6 C 1.46500 * 119.99988 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.46902 * 179.97438 * 6 5 3 8 8 H 1.07999 * 119.99834 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00036 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00050 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00142 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46934 * 90.00079 * 11 9 7 13 13 H 1.48501 * 109.47124 * 209.99876 * 11 9 7 14 14 H 1.48499 * 109.46989 * 329.99795 * 11 9 7 15 15 C 1.46501 * 119.99504 * 180.02562 * 2 1 3 16 16 C 1.52999 * 109.47444 * 359.23121 * 15 2 1 17 17 C 1.52990 * 109.47400 * 300.00229 * 16 15 2 18 18 C 1.53003 * 109.47463 * 299.99897 * 17 16 15 19 19 C 1.53001 * 109.47221 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46940 * 174.99787 * 19 18 17 21 21 C 1.53005 * 109.46750 * 60.00014 * 18 17 16 22 22 C 1.53001 * 109.47058 * 299.99854 * 21 18 17 23 23 H 1.08997 * 109.47449 * 275.93266 * 1 2 3 24 24 H 1.09008 * 109.46691 * 35.93054 * 1 2 3 25 25 H 1.09003 * 109.47230 * 155.92692 * 1 2 3 26 26 H 0.96996 * 119.99987 * 359.97438 * 5 3 2 27 27 H 1.09005 * 109.47047 * 299.99596 * 6 5 3 28 28 H 1.08999 * 109.47428 * 59.99541 * 6 5 3 29 29 H 0.96999 * 120.00482 * 179.97438 * 10 9 7 30 30 H 1.08993 * 109.47314 * 119.23910 * 15 2 1 31 31 H 1.08999 * 109.46818 * 179.97438 * 16 15 2 32 32 H 1.09003 * 109.46768 * 60.00685 * 16 15 2 33 33 H 1.09000 * 109.47295 * 179.97438 * 17 16 15 34 34 H 1.09003 * 109.47000 * 60.00226 * 17 16 15 35 35 H 1.08996 * 109.46688 * 299.99964 * 18 17 16 36 36 H 1.09000 * 109.47155 * 295.00001 * 19 18 17 37 37 H 1.09004 * 109.46931 * 55.00112 * 19 18 17 38 38 H 0.96698 * 114.00000 * 180.02562 * 20 19 18 39 39 H 1.08999 * 109.47070 * 60.00534 * 21 18 17 40 40 H 1.09001 * 109.46511 * 180.02562 * 21 18 17 41 41 H 1.09000 * 109.47025 * 300.00496 * 22 21 18 42 42 H 1.08992 * 109.47026 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3344 0.0005 6 6 2.1976 3.6031 0.0000 7 6 1.2184 4.7485 0.0001 8 1 0.1566 4.5511 0.0001 9 6 1.6780 6.0484 -0.0009 10 7 2.9710 6.2887 -0.0015 11 14 0.4641 7.4683 -0.0015 12 1 0.1429 7.8455 1.3985 13 1 1.0639 8.6320 -0.7025 14 1 -0.7793 7.0562 -0.7009 15 6 2.1974 -1.2688 -0.0006 16 6 1.2033 -2.4316 0.0183 17 6 0.3382 -2.3427 1.2770 18 6 1.2322 -2.4160 2.5165 19 6 0.3671 -2.3265 3.7753 20 8 1.1870 -2.5115 4.9309 21 6 2.2263 -1.2531 2.4977 22 6 3.0915 -1.3421 1.2390 23 1 -0.3634 0.1062 1.0221 24 1 -0.3633 0.8322 -0.6031 25 1 -0.3634 -0.9383 -0.4192 26 1 0.4951 2.3344 0.0005 27 1 2.8250 3.6608 0.8895 28 1 2.8237 3.6608 -0.8904 29 1 3.2944 7.2032 -0.0026 30 1 2.8138 -1.3322 -0.8973 31 1 1.7483 -3.3756 0.0174 32 1 0.5664 -2.3794 -0.8648 33 1 -0.3703 -3.1709 1.2902 34 1 -0.2068 -1.3988 1.2773 35 1 1.7771 -3.3600 2.5161 36 1 -0.1086 -1.3468 3.8203 37 1 -0.3990 -3.1013 3.7455 38 1 0.7036 -2.4676 5.7673 39 1 1.6813 -0.3092 2.4982 40 1 2.8635 -1.3056 3.3806 41 1 3.6364 -2.2861 1.2386 42 1 3.8000 -0.5139 1.2258 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408367951.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:52 Heat of formation + Delta-G solvation = -102.776325 kcal Electronic energy + Delta-G solvation = -21955.062612 eV Core-core repulsion = 18741.164827 eV Total energy + Delta-G solvation = -3213.897785 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73984 -39.58196 -37.59838 -36.15292 -35.37743 -34.21563 -32.26044 -31.61504 -29.07367 -27.91852 -25.92263 -24.62457 -23.64307 -22.28661 -21.13810 -20.53866 -19.11624 -18.24159 -17.94066 -17.26823 -17.04254 -16.51442 -16.20410 -15.83378 -15.23124 -15.11378 -14.93244 -14.79750 -14.35613 -14.05457 -13.78957 -13.63235 -13.26007 -13.12343 -12.99258 -12.83251 -12.72166 -12.67007 -12.36875 -12.19466 -11.92971 -11.46918 -11.35476 -11.22044 -11.10038 -10.87633 -10.79438 -10.57583 -9.93973 -9.30233 -8.27987 -6.44961 1.43004 1.46349 1.57330 1.85668 2.29538 2.39213 3.06839 3.28288 3.36918 3.76968 3.82665 3.95309 4.12887 4.24377 4.41803 4.42985 4.46318 4.56502 4.58652 4.62150 4.75606 4.80375 4.82710 4.86893 5.03139 5.08749 5.17296 5.24148 5.24419 5.27405 5.32654 5.42406 5.48869 5.53931 5.71317 5.85482 5.88873 6.18250 6.67023 6.94209 7.24068 7.27260 7.77963 8.84597 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.024349 B = 0.004305 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.684171 B = 6502.059397 C = 6797.543874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.620 5.620 3 C 0.689 3.311 4 O -0.645 6.645 5 N -0.725 5.725 6 C 0.287 3.713 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.987 3.013 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.254 1.254 15 C 0.165 3.835 16 C -0.112 4.112 17 C -0.136 4.136 18 C -0.080 4.080 19 C 0.079 3.921 20 O -0.597 6.597 21 C -0.095 4.095 22 C -0.137 4.137 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.402 0.598 27 H -0.020 1.020 28 H -0.018 1.018 29 H 0.269 0.731 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.394 0.606 39 H 0.036 0.964 40 H 0.043 0.957 41 H 0.080 0.920 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.714 -20.672 3.889 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.358 5.358 3 C 0.390 3.610 4 O -0.527 6.527 5 N -0.380 5.380 6 C 0.164 3.836 7 C -0.592 4.592 8 H 0.101 0.899 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.810 3.190 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.177 1.177 15 C 0.061 3.939 16 C -0.149 4.149 17 C -0.172 4.172 18 C -0.099 4.099 19 C 0.002 3.998 20 O -0.405 6.405 21 C -0.132 4.132 22 C -0.175 4.175 23 H 0.086 0.914 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.239 0.761 27 H -0.002 1.002 28 H 0.000 1.000 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.243 0.757 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.271 -20.595 3.426 23.726 hybrid contribution -0.301 1.315 0.519 1.445 sum -11.572 -19.280 3.945 22.830 Atomic orbital electron populations 1.22363 0.78350 1.04995 1.02109 1.47073 1.07312 1.03451 1.77969 1.16315 0.85051 0.81519 0.78115 1.90795 1.14245 1.87147 1.60557 1.45434 1.10101 1.04593 1.77871 1.18353 0.91804 0.79903 0.93558 1.21581 0.93766 0.90893 1.52920 0.89891 1.26091 0.97406 1.02298 0.93802 1.70155 1.15256 1.21677 1.49978 0.85123 0.78360 0.76902 0.78600 1.19591 1.20933 1.17745 1.20931 0.93580 0.82469 0.96874 1.21791 0.97442 0.96388 0.99320 1.22171 0.97914 1.05184 0.91969 1.21129 0.96315 0.98170 0.94244 1.22302 0.92555 0.99990 0.85002 1.86456 1.40470 1.95901 1.17694 1.21283 0.97583 0.98070 0.96306 1.21923 0.98523 1.01763 0.95304 0.91440 0.91989 0.86362 0.76140 1.00179 0.99992 0.92260 0.92910 0.88728 0.88852 0.88696 0.89203 0.90715 0.93990 0.91218 0.75677 0.94520 0.93841 0.90150 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.29 7.91 127.77 1.01 2.30 16 2 N -0.62 -19.12 2.25 -840.59 -1.89 -21.02 16 3 C 0.69 30.52 7.99 179.06 1.43 31.96 16 4 O -0.64 -34.97 14.39 -3.99 -0.06 -35.02 16 5 N -0.72 -33.08 5.42 -482.29 -2.61 -35.69 16 6 C 0.29 16.61 5.43 85.63 0.46 17.07 16 7 C -0.55 -30.96 9.28 25.60 0.24 -30.72 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.00 0.20 5.46 84.65 0.46 0.66 16 10 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 11 Si 0.99 42.82 29.54 68.60 2.03 44.85 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 15 C 0.16 4.42 2.94 44.99 0.13 4.56 16 16 C -0.11 -1.72 4.91 30.59 0.15 -1.57 16 17 C -0.14 -1.85 4.54 30.59 0.14 -1.71 16 18 C -0.08 -1.52 2.43 -10.79 -0.03 -1.55 16 19 C 0.08 1.31 6.43 71.98 0.46 1.77 16 20 O -0.60 -11.74 13.19 -148.98 -1.97 -13.71 16 21 C -0.09 -2.67 4.94 30.60 0.15 -2.52 16 22 C -0.14 -4.17 5.23 30.60 0.16 -4.01 16 23 H 0.07 1.25 6.70 -2.39 -0.02 1.23 16 24 H 0.06 1.30 6.69 -2.38 -0.02 1.28 16 25 H 0.12 1.53 4.95 -2.39 -0.01 1.52 16 26 H 0.40 15.28 6.18 -92.71 -0.57 14.71 16 27 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 16 28 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.09 6.90 -2.39 -0.02 1.07 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.27 3.66 -2.39 -0.01 1.27 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.39 4.09 9.12 -74.06 -0.68 3.41 16 39 H 0.04 1.19 7.60 -2.39 -0.02 1.17 16 40 H 0.04 1.36 7.82 -2.39 -0.02 1.34 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 42 H 0.04 1.64 6.11 -2.39 -0.01 1.62 16 Total: -1.00 -80.12 321.80 0.34 -79.77 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.22 Total: 21.86 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 4.77 Total: 16.23 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.22 Total: -113.98 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -2.02 Total: -48.73 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -80.12 0.34 -79.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408367951.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.003 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds