Wall clock time and date at job start Mon Mar 30 2020 01:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99896 * 2 1 4 4 C 1.53002 * 109.46932 * 89.99886 * 3 2 1 5 5 H 1.09002 * 109.47067 * 55.00143 * 4 3 2 6 6 C 1.52997 * 109.47143 * 295.00126 * 4 3 2 7 7 C 1.53002 * 109.46817 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 4 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 12 12 O 1.42900 * 109.47616 * 179.97438 * 10 9 8 13 13 C 1.34774 * 120.00408 * 180.02562 * 2 1 3 14 14 O 1.21587 * 120.00509 * 180.02562 * 13 2 1 15 15 N 1.34785 * 119.99821 * 0.02562 * 13 2 1 16 16 C 1.46500 * 119.99985 * 180.02562 * 15 13 2 17 17 C 1.50698 * 109.47072 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99824 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00328 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99670 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00385 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47222 * 59.99885 * 21 19 17 23 23 H 1.48504 * 109.47258 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47042 * 299.99989 * 21 19 17 25 25 H 1.08997 * 109.46707 * 90.00420 * 1 2 3 26 26 H 1.09004 * 109.46623 * 209.99899 * 1 2 3 27 27 H 1.08992 * 109.47092 * 329.99732 * 1 2 3 28 28 H 1.08997 * 109.47275 * 330.00045 * 3 2 1 29 29 H 1.08999 * 109.47004 * 210.00000 * 3 2 1 30 30 H 1.08993 * 109.47194 * 59.99677 * 6 4 3 31 31 H 1.09002 * 109.46695 * 299.99691 * 6 4 3 32 32 H 1.08992 * 109.47063 * 299.99823 * 7 6 4 33 33 H 1.09004 * 109.46733 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 35 35 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 38 38 H 0.96700 * 113.99696 * 300.00309 * 12 10 9 39 39 H 0.96996 * 119.99471 * 359.97438 * 15 13 2 40 40 H 1.09006 * 109.46953 * 299.99341 * 16 15 13 41 41 H 1.08991 * 109.47406 * 59.99806 * 16 15 13 42 42 H 0.96999 * 120.00211 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 1 2.9642 0.9131 1.9816 6 6 1.1179 2.0135 2.1265 7 6 1.3730 2.4557 3.5689 8 6 2.2439 3.7136 3.5702 9 6 3.5785 3.4106 2.8862 10 6 3.3236 2.9683 1.4439 11 1 2.8116 3.7653 0.9046 12 8 4.5701 2.6858 0.8048 13 6 2.1390 -1.1671 -0.0005 14 8 3.3549 -1.1671 -0.0001 15 7 1.4651 -2.3344 -0.0016 16 6 2.1977 -3.6031 -0.0016 17 6 1.2184 -4.7486 -0.0022 18 1 0.1566 -4.5512 -0.0022 19 6 1.6780 -6.0485 -0.0028 20 7 2.9710 -6.2887 -0.0034 21 14 0.4642 -7.4683 -0.0044 22 1 -0.3891 -7.3889 -1.2172 23 1 1.2067 -8.7544 -0.0055 24 1 -0.3902 -7.3905 1.2078 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6085 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5138 30 1 0.4972 1.1175 2.1252 31 1 0.6062 2.8108 1.5875 32 1 1.8848 1.6588 4.1081 33 1 0.4221 2.6721 4.0560 34 1 1.7320 4.5107 3.0309 35 1 2.4260 4.0284 4.5977 36 1 4.1993 4.3065 2.8874 37 1 4.0904 2.6136 3.4254 38 1 5.1738 3.4403 0.7693 39 1 0.4951 -2.3344 -0.0016 40 1 2.8249 -3.6605 -0.8912 41 1 2.8236 -3.6613 0.8888 42 1 3.2944 -7.2032 -0.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408368465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:10 Heat of formation + Delta-G solvation = -97.480172 kcal Electronic energy + Delta-G solvation = -21560.602525 eV Core-core repulsion = 18346.934398 eV Total energy + Delta-G solvation = -3213.668127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.91062 -38.72130 -35.75868 -35.02992 -34.10415 -32.40264 -31.22201 -29.80917 -27.26724 -27.02340 -24.79426 -22.82184 -22.33525 -21.26550 -19.96018 -19.13663 -17.71739 -17.31234 -15.99676 -15.91040 -15.72684 -14.75079 -14.64511 -14.58219 -14.10824 -13.94757 -13.32856 -13.18714 -13.16921 -12.95776 -12.66585 -12.27396 -12.02830 -11.85272 -11.69094 -11.61016 -11.42646 -11.05453 -10.92407 -10.87184 -10.81493 -10.40192 -10.24655 -10.21520 -9.88930 -9.32127 -9.20737 -8.66148 -8.25066 -7.63018 -6.09795 -4.16317 3.28964 3.30195 3.34156 3.37926 4.03101 4.11646 4.36079 4.54266 4.57542 4.84066 4.86936 5.00706 5.05965 5.19869 5.25865 5.26648 5.32091 5.32859 5.38172 5.48965 5.58664 5.68012 5.77759 5.85220 5.91464 5.96121 6.01625 6.11454 6.12071 6.31164 6.43123 6.93340 7.24288 7.59097 7.63479 7.65385 7.65614 7.94627 8.09204 8.82822 9.00721 9.41801 9.56891 11.00484 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029867 B = 0.003836 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.250548 B = 7298.055213 C = 7529.086568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.641 5.641 3 C 0.145 3.855 4 C -0.097 4.097 5 H 0.084 0.916 6 C -0.114 4.114 7 C -0.123 4.123 8 C -0.115 4.115 9 C -0.152 4.152 10 C 0.114 3.886 11 H 0.052 0.948 12 O -0.557 6.557 13 C 0.692 3.308 14 O -0.593 6.593 15 N -0.731 5.731 16 C 0.267 3.733 17 C -0.541 4.541 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.372 0.628 39 H 0.385 0.615 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.348 21.767 4.633 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.380 5.380 3 C 0.021 3.979 4 C -0.117 4.117 5 H 0.102 0.898 6 C -0.151 4.151 7 C -0.160 4.160 8 C -0.153 4.153 9 C -0.190 4.190 10 C 0.054 3.946 11 H 0.069 0.931 12 O -0.362 6.362 13 C 0.393 3.607 14 O -0.471 6.471 15 N -0.384 5.384 16 C 0.145 3.855 17 C -0.580 4.580 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.218 0.782 39 H 0.219 0.781 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.571 20.943 4.558 21.916 hybrid contribution -0.895 -0.241 0.169 0.942 sum -5.466 20.702 4.726 21.927 Atomic orbital electron populations 1.21760 0.80935 1.02632 1.01272 1.47048 1.05633 1.05220 1.80142 1.21152 0.97864 0.83603 0.95253 1.21577 0.95033 0.96922 0.98129 0.89756 1.21686 0.96792 1.01392 0.95272 1.21579 0.99629 0.97691 0.97142 1.21472 0.95524 0.97939 1.00350 1.22273 0.97949 1.01534 0.97202 1.21733 0.85041 0.96482 0.91324 0.93057 1.86680 1.28057 1.40665 1.80769 1.16126 0.85571 0.80496 0.78461 1.90886 1.11672 1.86159 1.58393 1.45847 1.09553 1.05704 1.77321 1.18950 0.91977 0.76990 0.97535 1.21191 0.92905 0.90779 1.53103 0.92117 1.24938 0.95375 0.98852 0.94825 1.69976 1.12554 1.20819 1.48946 0.86485 0.80750 0.81078 0.78619 1.20113 1.21089 1.20120 0.93267 0.91424 0.91201 0.91760 0.89000 0.90744 0.92110 0.91737 0.91930 0.92042 0.91959 0.91967 0.91001 0.78197 0.78104 0.95812 0.95851 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 9.27 59.85 0.55 1.50 16 2 N -0.64 -10.55 2.70 -187.35 -0.51 -11.06 16 3 C 0.15 2.12 4.82 -4.04 -0.02 2.10 16 4 C -0.10 -1.26 2.14 -90.62 -0.19 -1.46 16 5 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 6 C -0.11 -1.17 4.19 -26.73 -0.11 -1.28 16 7 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 8 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 9 C -0.15 -1.40 5.54 -26.73 -0.15 -1.55 16 10 C 0.11 1.23 2.90 -26.73 -0.08 1.15 16 11 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 12 O -0.56 -6.94 12.56 -35.23 -0.44 -7.38 16 13 C 0.69 15.37 8.28 -86.91 -0.72 14.65 16 14 O -0.59 -15.81 15.92 5.29 0.08 -15.73 16 15 N -0.73 -16.60 5.41 -66.42 -0.36 -16.96 16 16 C 0.27 7.43 5.43 -5.19 -0.03 7.41 16 17 C -0.54 -15.13 9.28 -34.44 -0.32 -15.45 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.83 6.37 -51.93 -0.33 0.50 16 27 H 0.07 0.65 5.98 -51.93 -0.31 0.34 16 28 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.09 1.64 6.81 -51.93 -0.35 1.29 16 30 H 0.07 0.82 5.89 -51.93 -0.31 0.52 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.37 2.81 9.08 45.56 0.41 3.22 16 39 H 0.39 7.55 6.05 -40.82 -0.25 7.31 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 331.76 15.07 5.00 5.00 Total: -1.00 -34.91 331.76 -8.15 -43.05 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.16 Total: 6.48 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -1.48 Total: 6.38 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.13 Total: -54.00 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.36 Total: -23.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.91 -8.15 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408368465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.427 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds