Wall clock time and date at job start Mon Mar 30 2020 01:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99896 * 2 1 4 4 C 1.53002 * 109.46932 * 89.99886 * 3 2 1 5 5 H 1.09002 * 109.47067 * 55.00143 * 4 3 2 6 6 C 1.52997 * 109.47143 * 295.00126 * 4 3 2 7 7 C 1.53002 * 109.46817 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47233 * 60.00194 * 7 6 4 9 9 C 1.52997 * 109.47060 * 299.99657 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 12 12 O 1.42900 * 109.47616 * 179.97438 * 10 9 8 13 13 C 1.34774 * 120.00408 * 180.02562 * 2 1 3 14 14 O 1.21587 * 120.00509 * 180.02562 * 13 2 1 15 15 N 1.34785 * 119.99821 * 0.02562 * 13 2 1 16 16 C 1.46500 * 119.99985 * 180.02562 * 15 13 2 17 17 C 1.50698 * 109.47072 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99824 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00328 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99670 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00385 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47222 * 59.99885 * 21 19 17 23 23 H 1.48504 * 109.47258 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47042 * 299.99989 * 21 19 17 25 25 H 1.08997 * 109.46707 * 90.00420 * 1 2 3 26 26 H 1.09004 * 109.46623 * 209.99899 * 1 2 3 27 27 H 1.08992 * 109.47092 * 329.99732 * 1 2 3 28 28 H 1.08997 * 109.47275 * 330.00045 * 3 2 1 29 29 H 1.08999 * 109.47004 * 210.00000 * 3 2 1 30 30 H 1.08993 * 109.47194 * 59.99677 * 6 4 3 31 31 H 1.09002 * 109.46695 * 299.99691 * 6 4 3 32 32 H 1.08992 * 109.47063 * 299.99823 * 7 6 4 33 33 H 1.09004 * 109.46733 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47398 * 59.99826 * 8 7 6 35 35 H 1.09001 * 109.47194 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 38 38 H 0.96700 * 113.99696 * 300.00309 * 12 10 9 39 39 H 0.96996 * 119.99471 * 359.97438 * 15 13 2 40 40 H 1.09006 * 109.46953 * 299.99341 * 16 15 13 41 41 H 1.08991 * 109.47406 * 59.99806 * 16 15 13 42 42 H 0.96999 * 120.00211 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4425 5 1 2.9642 0.9131 1.9816 6 6 1.1179 2.0135 2.1265 7 6 1.3730 2.4557 3.5689 8 6 2.2439 3.7136 3.5702 9 6 3.5785 3.4106 2.8862 10 6 3.3236 2.9683 1.4439 11 1 2.8116 3.7653 0.9046 12 8 4.5701 2.6858 0.8048 13 6 2.1390 -1.1671 -0.0005 14 8 3.3549 -1.1671 -0.0001 15 7 1.4651 -2.3344 -0.0016 16 6 2.1977 -3.6031 -0.0016 17 6 1.2184 -4.7486 -0.0022 18 1 0.1566 -4.5512 -0.0022 19 6 1.6780 -6.0485 -0.0028 20 7 2.9710 -6.2887 -0.0034 21 14 0.4642 -7.4683 -0.0044 22 1 -0.3891 -7.3889 -1.2172 23 1 1.2067 -8.7544 -0.0055 24 1 -0.3902 -7.3905 1.2078 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6085 2.0284 -0.5138 29 1 3.1499 1.1384 -0.5138 30 1 0.4972 1.1175 2.1252 31 1 0.6062 2.8108 1.5875 32 1 1.8848 1.6588 4.1081 33 1 0.4221 2.6721 4.0560 34 1 1.7320 4.5107 3.0309 35 1 2.4260 4.0284 4.5977 36 1 4.1993 4.3065 2.8874 37 1 4.0904 2.6136 3.4254 38 1 5.1738 3.4403 0.7693 39 1 0.4951 -2.3344 -0.0016 40 1 2.8249 -3.6605 -0.8912 41 1 2.8236 -3.6613 0.8888 42 1 3.2944 -7.2032 -0.0043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408368465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:09 Heat of formation + Delta-G solvation = -124.470953 kcal Electronic energy + Delta-G solvation = -21561.772933 eV Core-core repulsion = 18346.934398 eV Total energy + Delta-G solvation = -3214.838535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30260 -39.93777 -36.91774 -36.24170 -36.11231 -34.39621 -32.38935 -30.63592 -29.26772 -28.13453 -26.22577 -24.40093 -23.48375 -22.36105 -20.93711 -20.79735 -19.35029 -18.23027 -17.96210 -17.43776 -17.02619 -16.50659 -15.98295 -15.66290 -15.19130 -15.03593 -14.71048 -14.62729 -14.35900 -14.12841 -13.97795 -13.77239 -13.67823 -13.18813 -12.92356 -12.89932 -12.67254 -12.50487 -12.34579 -12.20814 -11.93921 -11.62298 -11.50316 -11.33311 -11.24932 -10.94008 -10.79190 -10.74095 -9.99482 -9.33361 -8.28200 -6.45798 1.42765 1.48177 1.56178 1.84257 2.24676 2.39210 3.06246 3.26047 3.34195 3.69162 3.80135 4.01278 4.15203 4.23204 4.32471 4.33955 4.41863 4.46228 4.57817 4.59897 4.69375 4.83738 4.88628 4.98624 5.04050 5.07290 5.19102 5.21444 5.23909 5.25091 5.29485 5.37859 5.47822 5.52247 5.64271 5.78241 5.84800 6.13684 6.65635 6.98997 7.21255 7.25405 7.73685 8.84313 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029867 B = 0.003836 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.250548 B = 7298.055213 C = 7529.086568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.628 5.628 3 C 0.142 3.858 4 C -0.094 4.094 5 H 0.027 0.973 6 C -0.108 4.108 7 C -0.124 4.124 8 C -0.110 4.110 9 C -0.149 4.149 10 C 0.113 3.887 11 H 0.084 0.916 12 O -0.590 6.590 13 C 0.685 3.315 14 O -0.649 6.649 15 N -0.724 5.724 16 C 0.286 3.714 17 C -0.556 4.556 18 H 0.084 0.916 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.989 3.011 22 H -0.261 1.261 23 H -0.285 1.285 24 H -0.261 1.261 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.391 0.609 39 H 0.403 0.597 40 H -0.018 1.018 41 H -0.020 1.020 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.947 23.741 4.739 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.365 5.365 3 C 0.019 3.981 4 C -0.114 4.114 5 H 0.046 0.954 6 C -0.146 4.146 7 C -0.162 4.162 8 C -0.148 4.148 9 C -0.186 4.186 10 C 0.054 3.946 11 H 0.101 0.899 12 O -0.398 6.398 13 C 0.386 3.614 14 O -0.531 6.531 15 N -0.379 5.379 16 C 0.163 3.837 17 C -0.594 4.594 18 H 0.102 0.898 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.812 3.188 22 H -0.185 1.185 23 H -0.210 1.210 24 H -0.185 1.185 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.060 0.940 38 H 0.240 0.760 39 H 0.240 0.760 40 H 0.000 1.000 41 H -0.002 1.002 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.237 23.003 4.668 24.875 hybrid contribution 0.290 -0.760 0.130 0.824 sum -7.947 22.243 4.798 24.102 Atomic orbital electron populations 1.22116 0.77499 1.04532 1.03088 1.47055 1.07679 1.03732 1.78075 1.21342 0.96726 0.83437 0.96551 1.21525 0.96914 0.96519 0.96431 0.95395 1.21672 0.94793 1.02149 0.95951 1.21591 1.00637 0.97581 0.96343 1.21472 0.94433 0.97754 1.01128 1.22244 0.99103 1.01390 0.95912 1.21843 0.84376 0.95808 0.92610 0.89867 1.86647 1.29348 1.42667 1.81171 1.16395 0.85049 0.81809 0.78113 1.90842 1.14451 1.87192 1.60632 1.45432 1.10147 1.04524 1.77812 1.18373 0.91868 0.79886 0.93573 1.21554 0.93767 0.90874 1.53197 0.89794 1.26118 0.97471 1.02329 0.93715 1.70156 1.15315 1.21779 1.49812 0.85150 0.77847 0.76261 0.79580 1.18499 1.21022 1.18513 0.91369 0.91582 0.87347 0.87211 0.93081 0.91631 0.88730 0.94423 0.89895 0.89670 0.91041 0.89674 0.94001 0.75993 0.75976 1.00027 1.00183 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 9.27 127.77 1.18 2.67 16 2 N -0.63 -20.53 2.70 -864.91 -2.33 -22.86 16 3 C 0.14 4.09 4.82 86.38 0.42 4.51 16 4 C -0.09 -2.44 2.14 -10.79 -0.02 -2.47 16 5 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 6 C -0.11 -1.95 4.19 30.59 0.13 -1.82 16 7 C -0.12 -2.06 5.92 30.60 0.18 -1.88 16 8 C -0.11 -1.48 5.92 30.59 0.18 -1.29 16 9 C -0.15 -2.56 5.54 30.59 0.17 -2.39 16 10 C 0.11 2.30 2.90 30.60 0.09 2.38 16 11 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 12 O -0.59 -15.02 12.56 -148.98 -1.87 -16.89 16 13 C 0.69 31.92 8.28 179.05 1.48 33.40 16 14 O -0.65 -37.39 15.92 -3.99 -0.06 -37.45 16 15 N -0.72 -34.09 5.41 -482.30 -2.61 -36.70 16 16 C 0.29 16.92 5.43 85.63 0.46 17.39 16 17 C -0.56 -31.56 9.28 25.60 0.24 -31.32 16 18 H 0.08 4.27 7.60 -2.91 -0.02 4.25 16 19 C 0.00 0.18 5.46 84.65 0.46 0.64 16 20 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 21 Si 0.99 43.21 29.54 68.60 2.03 45.23 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.46 6.37 -2.39 -0.02 1.45 16 27 H 0.11 1.53 5.98 -2.39 -0.01 1.52 16 28 H 0.11 2.17 8.07 -2.39 -0.02 2.15 16 29 H 0.05 1.91 6.81 -2.39 -0.02 1.89 16 30 H 0.07 1.29 5.89 -2.39 -0.01 1.28 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 37 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.39 5.82 9.08 -74.06 -0.67 5.14 16 39 H 0.40 15.73 6.05 -92.71 -0.56 15.17 16 40 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 41 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 42 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -83.40 331.76 0.19 -83.21 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.22 Total: 23.53 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 4.97 Total: 19.82 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -4.66 Total: -117.44 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -1.93 Total: -54.35 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -83.40 0.19 -83.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408368465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.261 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds