Wall clock time and date at job start Mon Mar 30 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47217 * 2 1 4 4 C 1.42907 * 113.99904 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.46812 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47231 * 65.00209 * 5 4 3 7 7 C 1.46499 * 120.00075 * 269.99417 * 6 5 4 8 8 C 1.34782 * 119.99954 * 89.99833 * 6 5 4 9 9 O 1.21582 * 119.99666 * 4.63706 * 8 6 5 10 10 N 1.34778 * 119.99552 * 184.63379 * 8 6 5 11 11 C 1.46498 * 119.99307 * 174.92910 * 10 8 6 12 12 C 1.53005 * 109.46854 * 184.60873 * 11 10 8 13 13 C 1.50699 * 115.55018 * 306.48283 * 12 11 10 14 14 H 1.08004 * 120.00007 * 144.25492 * 13 12 11 15 15 C 1.37880 * 120.00367 * 324.25923 * 13 12 11 16 16 N 1.31519 * 119.99465 * 3.36045 * 15 13 12 17 17 Si 1.86794 * 120.00319 * 183.36413 * 15 13 12 18 18 H 1.48504 * 109.47126 * 59.99808 * 17 15 13 19 19 H 1.48498 * 109.47354 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47317 * 299.99905 * 17 15 13 21 21 C 1.53003 * 117.49707 * 160.81584 * 12 11 10 22 22 C 1.53001 * 117.49964 * 92.15486 * 12 11 10 23 23 H 1.09009 * 109.47302 * 299.99855 * 1 2 3 24 24 H 1.09001 * 109.47469 * 59.99770 * 1 2 3 25 25 H 1.09002 * 109.47476 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46822 * 240.00214 * 2 1 3 27 27 H 1.09001 * 109.47469 * 120.00230 * 2 1 3 28 28 H 1.09001 * 109.46648 * 60.00307 * 4 3 2 29 29 H 1.08999 * 109.47154 * 300.00059 * 4 3 2 30 30 H 1.08997 * 109.47365 * 305.00013 * 5 4 3 31 31 H 1.09007 * 109.47061 * 185.00462 * 5 4 3 32 32 H 1.08997 * 109.47740 * 264.31569 * 7 6 5 33 33 H 1.09004 * 109.47048 * 24.31720 * 7 6 5 34 34 H 1.08997 * 109.47138 * 144.31392 * 7 6 5 35 35 H 0.96999 * 120.00509 * 354.66050 * 10 8 6 36 36 H 1.09000 * 109.47434 * 304.61003 * 11 10 8 37 37 H 1.09002 * 109.46906 * 64.61477 * 11 10 8 38 38 H 0.97002 * 119.99413 * 185.00917 * 16 15 13 39 39 H 1.09000 * 117.50123 * 359.97438 * 21 12 11 40 40 H 1.09005 * 117.49590 * 145.02133 * 21 12 11 41 41 H 1.08999 * 117.49729 * 214.98213 * 22 12 11 42 42 H 1.09000 * 117.49307 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 7 3.3878 3.5610 1.2506 7 6 2.0579 4.1687 1.3407 8 6 4.2089 3.5748 2.3194 9 8 5.3425 3.1465 2.2206 10 7 3.7732 4.0634 3.4975 11 6 4.6251 3.9772 4.6862 12 6 3.8561 4.4947 5.9034 13 6 3.2596 5.8710 5.7584 14 1 2.3068 6.0974 6.2138 15 6 3.9301 6.8413 5.0442 16 7 5.0576 6.5475 4.4342 17 14 3.2372 8.5730 4.9431 18 1 3.1295 9.1437 6.3099 19 1 4.1399 9.4203 4.1232 20 1 1.8915 8.5320 4.3165 21 6 4.3675 4.0886 7.2871 22 6 3.0794 3.4722 6.7355 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.8332 0.9767 -0.8909 29 1 3.8340 0.9764 0.8891 30 1 3.3492 3.4411 -0.8429 31 1 4.9082 3.0253 -0.0913 32 1 2.1339 5.2393 1.1505 33 1 1.3997 3.7141 0.6002 34 1 1.6504 4.0050 2.3383 35 1 2.8972 4.4755 3.5575 36 1 4.9128 2.9391 4.8526 37 1 5.5192 4.5826 4.5370 38 1 5.5665 7.2456 3.9931 39 1 5.2515 3.4525 7.3302 40 1 4.2720 4.8169 8.0926 41 1 2.1372 3.7952 7.1782 42 1 3.1161 2.4310 6.4153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431122110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:48 Heat of formation + Delta-G solvation = -47.138816 kcal Electronic energy + Delta-G solvation = -21788.870694 eV Core-core repulsion = 18577.385533 eV Total energy + Delta-G solvation = -3211.485162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.39631 -37.90642 -36.72619 -34.80511 -33.05332 -32.15716 -31.51904 -29.15002 -26.31089 -25.65302 -24.95761 -22.83262 -22.40923 -21.19255 -19.21462 -18.92864 -17.53578 -16.50156 -16.35831 -16.02928 -15.31326 -15.22893 -14.74009 -14.08219 -13.83346 -13.75218 -13.29173 -12.90206 -12.75561 -12.58694 -12.42415 -12.07329 -11.79396 -11.69605 -11.57226 -11.35734 -11.28919 -11.05258 -10.91539 -10.74041 -10.48865 -10.21768 -9.66384 -9.58957 -9.18856 -8.92103 -8.81381 -8.25838 -8.17521 -7.55580 -5.95863 -4.16202 3.24130 3.32129 3.32953 3.41441 3.71943 4.13953 4.32041 4.81851 4.94501 5.06336 5.09786 5.25134 5.33550 5.37730 5.42516 5.51786 5.52554 5.64641 5.78391 5.85349 5.95079 5.99265 6.06631 6.08855 6.18178 6.35742 6.60175 6.66201 6.78755 6.90929 7.01143 7.15506 7.23898 7.29976 7.63283 7.74179 7.87541 8.03695 8.35842 8.80377 9.04584 9.46710 9.58858 10.93111 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.005217 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.426410 B = 5365.431969 C = 5708.327146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.046 3.954 5 C 0.142 3.858 6 N -0.636 5.636 7 C 0.090 3.910 8 C 0.700 3.300 9 O -0.612 6.612 10 N -0.698 5.698 11 C 0.184 3.816 12 C 0.037 3.963 13 C -0.498 4.498 14 H 0.060 0.940 15 C 0.075 3.925 16 N -0.863 5.863 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.198 4.198 22 C -0.212 4.212 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.016 0.984 37 H 0.108 0.892 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 -8.638 -9.108 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.304 6.304 4 C -0.032 4.032 5 C 0.017 3.983 6 N -0.375 5.375 7 C -0.054 4.054 8 C 0.401 3.599 9 O -0.493 6.493 10 N -0.349 5.349 11 C 0.060 3.940 12 C 0.036 3.964 13 C -0.535 4.535 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.499 5.499 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.237 4.237 22 C -0.250 4.250 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.035 0.965 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.137 -8.703 -9.308 14.143 hybrid contribution -0.633 0.876 0.140 1.090 sum -6.769 -7.827 -9.168 13.825 Atomic orbital electron populations 1.21726 0.93958 1.01941 1.03075 1.22402 0.95404 0.84410 0.99721 1.87883 1.21379 1.25783 1.95392 1.23079 0.81088 0.98724 1.00320 1.21202 1.01076 0.90138 0.85873 1.46839 1.16478 1.62403 1.11732 1.21597 0.84014 0.97199 1.02601 1.15939 0.83875 0.79533 0.80518 1.90801 1.18190 1.56268 1.84041 1.44936 1.21216 1.61429 1.07342 1.20885 0.95306 0.96162 0.81638 1.19245 0.96225 0.93212 0.87702 1.20457 1.05960 0.93873 1.33254 0.92228 1.25007 0.95224 0.98719 0.94065 1.69916 1.14290 1.32312 1.33395 0.86655 0.78864 0.84348 0.78124 1.20262 1.21263 1.20170 1.22938 0.95614 1.03548 1.01606 1.22943 0.95268 0.97608 1.09141 0.91761 0.92031 0.91447 0.93867 0.93664 0.93028 0.92812 0.90532 0.88485 0.93514 0.90748 0.91837 0.76798 0.96549 0.87396 0.92692 0.91491 0.90245 0.90713 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.15 0.38 -0.97 16 2 C 0.06 0.62 6.66 37.15 0.25 0.86 16 3 O -0.38 -5.15 9.28 -35.23 -0.33 -5.47 16 4 C 0.05 0.62 6.28 37.15 0.23 0.85 16 5 C 0.14 2.09 5.82 -4.05 -0.02 2.07 16 6 N -0.64 -11.34 2.84 -187.36 -0.53 -11.87 16 7 C 0.09 1.36 9.89 59.85 0.59 1.96 16 8 C 0.70 15.61 8.27 -86.91 -0.72 14.89 16 9 O -0.61 -15.53 15.90 5.29 0.08 -15.44 16 10 N -0.70 -15.90 4.96 -65.22 -0.32 -16.23 16 11 C 0.18 4.53 4.61 -4.04 -0.02 4.51 16 12 C 0.04 0.89 2.08 -155.66 -0.32 0.57 16 13 C -0.50 -12.75 8.26 -34.44 -0.28 -13.04 16 14 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 15 C 0.07 1.92 5.29 -17.82 -0.09 1.82 16 16 N -0.86 -23.31 10.17 55.43 0.56 -22.74 16 17 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C -0.20 -4.42 9.96 -26.69 -0.27 -4.68 16 22 C -0.21 -4.53 9.92 -26.69 -0.26 -4.80 16 23 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.10 1.53 7.36 -51.92 -0.38 1.14 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.98 7.24 -51.93 -0.38 0.61 16 34 H 0.06 0.99 6.57 -51.93 -0.34 0.65 16 35 H 0.40 8.74 5.73 -40.82 -0.23 8.51 16 36 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.11 3.02 5.97 -51.93 -0.31 2.71 16 38 H 0.26 6.97 8.32 -40.82 -0.34 6.64 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -29.61 344.18 -8.01 -37.62 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.10 Total: 9.73 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.54 Total: 4.05 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.29 Total: -50.84 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.24 Total: -20.91 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.61 -8.01 -37.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431122110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.519 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds