Wall clock time and date at job start Mon Mar 30 2020 01:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47217 * 2 1 4 4 C 1.42907 * 113.99904 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.46812 * 179.97438 * 4 3 2 6 6 N 1.46498 * 109.47231 * 65.00209 * 5 4 3 7 7 C 1.46499 * 120.00075 * 269.99417 * 6 5 4 8 8 C 1.34782 * 119.99954 * 89.99833 * 6 5 4 9 9 O 1.21582 * 119.99666 * 4.63706 * 8 6 5 10 10 N 1.34778 * 119.99552 * 184.63379 * 8 6 5 11 11 C 1.46498 * 119.99307 * 174.92910 * 10 8 6 12 12 C 1.53005 * 109.46854 * 184.60873 * 11 10 8 13 13 C 1.50699 * 115.55018 * 306.48283 * 12 11 10 14 14 H 1.08004 * 120.00007 * 144.25492 * 13 12 11 15 15 C 1.37880 * 120.00367 * 324.25923 * 13 12 11 16 16 N 1.31519 * 119.99465 * 3.36045 * 15 13 12 17 17 Si 1.86794 * 120.00319 * 183.36413 * 15 13 12 18 18 H 1.48504 * 109.47126 * 59.99808 * 17 15 13 19 19 H 1.48498 * 109.47354 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47317 * 299.99905 * 17 15 13 21 21 C 1.53003 * 117.49707 * 160.81584 * 12 11 10 22 22 C 1.53001 * 117.49964 * 92.15486 * 12 11 10 23 23 H 1.09009 * 109.47302 * 299.99855 * 1 2 3 24 24 H 1.09001 * 109.47469 * 59.99770 * 1 2 3 25 25 H 1.09002 * 109.47476 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46822 * 240.00214 * 2 1 3 27 27 H 1.09001 * 109.47469 * 120.00230 * 2 1 3 28 28 H 1.09001 * 109.46648 * 60.00307 * 4 3 2 29 29 H 1.08999 * 109.47154 * 300.00059 * 4 3 2 30 30 H 1.08997 * 109.47365 * 305.00013 * 5 4 3 31 31 H 1.09007 * 109.47061 * 185.00462 * 5 4 3 32 32 H 1.08997 * 109.47740 * 264.31569 * 7 6 5 33 33 H 1.09004 * 109.47048 * 24.31720 * 7 6 5 34 34 H 1.08997 * 109.47138 * 144.31392 * 7 6 5 35 35 H 0.96999 * 120.00509 * 354.66050 * 10 8 6 36 36 H 1.09000 * 109.47434 * 304.61003 * 11 10 8 37 37 H 1.09002 * 109.46906 * 64.61477 * 11 10 8 38 38 H 0.97002 * 119.99413 * 185.00917 * 16 15 13 39 39 H 1.09000 * 117.50123 * 359.97438 * 21 12 11 40 40 H 1.09005 * 117.49590 * 145.02133 * 21 12 11 41 41 H 1.08999 * 117.49729 * 214.98213 * 22 12 11 42 42 H 1.09000 * 117.49307 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 -0.0012 6 7 3.3878 3.5610 1.2506 7 6 2.0579 4.1687 1.3407 8 6 4.2089 3.5748 2.3194 9 8 5.3425 3.1465 2.2206 10 7 3.7732 4.0634 3.4975 11 6 4.6251 3.9772 4.6862 12 6 3.8561 4.4947 5.9034 13 6 3.2596 5.8710 5.7584 14 1 2.3068 6.0974 6.2138 15 6 3.9301 6.8413 5.0442 16 7 5.0576 6.5475 4.4342 17 14 3.2372 8.5730 4.9431 18 1 3.1295 9.1437 6.3099 19 1 4.1399 9.4203 4.1232 20 1 1.8915 8.5320 4.3165 21 6 4.3675 4.0886 7.2871 22 6 3.0794 3.4722 6.7355 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.8332 0.9767 -0.8909 29 1 3.8340 0.9764 0.8891 30 1 3.3492 3.4411 -0.8429 31 1 4.9082 3.0253 -0.0913 32 1 2.1339 5.2393 1.1505 33 1 1.3997 3.7141 0.6002 34 1 1.6504 4.0050 2.3383 35 1 2.8972 4.4755 3.5575 36 1 4.9128 2.9391 4.8526 37 1 5.5192 4.5826 4.5370 38 1 5.5665 7.2456 3.9931 39 1 5.2515 3.4525 7.3302 40 1 4.2720 4.8169 8.0926 41 1 2.1372 3.7952 7.1782 42 1 3.1161 2.4310 6.4153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431122110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:48 Heat of formation + Delta-G solvation = -64.880525 kcal Electronic energy + Delta-G solvation = -21789.640033 eV Core-core repulsion = 18577.385533 eV Total energy + Delta-G solvation = -3212.254500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.02023 -39.05090 -38.45925 -36.31465 -34.80571 -34.09595 -32.48788 -30.28727 -27.97733 -27.43778 -26.59534 -23.72473 -23.62234 -22.94171 -21.11030 -20.55989 -19.12190 -18.01614 -17.56435 -17.39224 -16.86076 -16.65000 -16.44369 -15.67538 -15.27269 -15.16412 -14.89990 -14.35811 -14.02978 -13.99719 -13.56293 -13.50367 -13.32444 -13.19681 -12.88531 -12.76458 -12.64793 -12.58828 -12.28540 -12.20377 -12.03225 -11.92905 -11.51205 -11.05063 -10.82480 -10.67130 -10.52968 -10.14380 -9.82785 -9.24186 -7.91516 -6.17629 1.45278 1.48067 1.54648 1.93802 2.37567 2.44424 2.78219 3.02841 3.38910 3.68144 4.11086 4.14349 4.20587 4.28374 4.32361 4.41735 4.46788 4.51101 4.54213 4.60624 4.70959 4.77915 4.81964 4.89320 4.91119 4.96283 4.99457 5.06576 5.12981 5.29362 5.30463 5.53919 5.62700 5.71495 5.98770 6.01108 6.14307 6.30611 6.40203 6.83913 7.31307 7.47361 7.84570 8.94889 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.005217 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.426410 B = 5365.431969 C = 5708.327146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.398 6.398 4 C 0.055 3.945 5 C 0.135 3.865 6 N -0.631 5.631 7 C 0.090 3.910 8 C 0.693 3.307 9 O -0.650 6.650 10 N -0.697 5.697 11 C 0.197 3.803 12 C 0.007 3.993 13 C -0.505 4.505 14 H 0.059 0.941 15 C 0.036 3.964 16 N -0.889 5.889 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.266 1.266 21 C -0.197 4.197 22 C -0.187 4.187 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.399 0.601 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.256 0.744 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 -8.982 -9.919 16.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.318 6.318 4 C -0.023 4.023 5 C 0.012 3.988 6 N -0.368 5.368 7 C -0.052 4.052 8 C 0.394 3.606 9 O -0.534 6.534 10 N -0.349 5.349 11 C 0.072 3.928 12 C 0.007 3.993 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.166 4.166 16 N -0.526 5.526 17 Si 0.776 3.224 18 H -0.202 1.202 19 H -0.219 1.219 20 H -0.190 1.190 21 C -0.236 4.236 22 C -0.225 4.225 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.028 0.972 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.125 -9.055 -10.138 15.837 hybrid contribution -0.055 0.919 0.375 0.994 sum -8.180 -8.136 -9.763 15.114 Atomic orbital electron populations 1.21730 0.92606 1.03226 1.02727 1.22616 0.96504 0.83275 1.00243 1.87845 1.20914 1.27514 1.95484 1.22902 0.81537 0.97493 1.00390 1.21445 1.00702 0.91379 0.85266 1.46935 1.16748 1.61796 1.11345 1.21722 0.82894 0.97448 1.03184 1.16174 0.83906 0.79237 0.81258 1.90762 1.20042 1.57816 1.84780 1.44816 1.21022 1.61754 1.07278 1.20539 0.94551 0.94842 0.82840 1.19295 0.98081 0.93747 0.88208 1.20648 1.05877 0.94664 1.33016 0.92276 1.25609 0.95366 1.01764 0.93862 1.70109 1.15425 1.32717 1.34304 0.85752 0.78445 0.80375 0.77862 1.20166 1.21935 1.19033 1.22960 0.96667 1.03676 1.00294 1.22930 0.95153 0.97507 1.06869 0.92852 0.91562 0.89408 0.92056 0.94434 0.90082 0.95591 0.87479 0.89895 0.93176 0.88214 0.92350 0.76433 0.97213 0.90981 0.93448 0.90716 0.90220 0.89634 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.97 6.66 71.98 0.48 1.45 16 3 O -0.40 -9.83 9.28 -148.98 -1.38 -11.21 16 4 C 0.05 1.40 6.28 71.98 0.45 1.85 16 5 C 0.14 3.83 5.82 86.38 0.50 4.34 16 6 N -0.63 -22.11 2.84 -864.93 -2.45 -24.56 16 7 C 0.09 2.60 9.89 127.77 1.26 3.87 16 8 C 0.69 31.36 8.27 179.05 1.48 32.84 16 9 O -0.65 -33.97 15.90 -3.97 -0.06 -34.04 16 10 N -0.70 -32.18 4.96 -478.53 -2.37 -34.55 16 11 C 0.20 9.92 4.61 86.38 0.40 10.31 16 12 C 0.01 0.36 2.08 -52.93 -0.11 0.25 16 13 C -0.50 -25.60 8.26 25.60 0.21 -25.39 16 14 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 15 C 0.04 1.84 5.29 84.65 0.45 2.29 16 16 N -0.89 -48.85 10.17 21.45 0.22 -48.63 16 17 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 C -0.20 -8.62 9.96 30.62 0.30 -8.31 16 22 C -0.19 -7.69 9.92 30.62 0.30 -7.39 16 23 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 31 H 0.08 2.60 7.36 -2.38 -0.02 2.58 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.10 2.38 7.24 -2.38 -0.02 2.36 16 34 H 0.06 1.75 6.57 -2.39 -0.02 1.73 16 35 H 0.40 17.64 5.73 -92.71 -0.53 17.11 16 36 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 37 H 0.07 4.19 5.97 -2.39 -0.01 4.17 16 38 H 0.26 13.90 8.32 -92.71 -0.77 13.13 16 39 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -63.71 344.18 2.91 -60.80 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: 0.46 Total: 34.43 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.47 Total: 14.55 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.61 Total: -107.74 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.45 Total: -45.25 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -63.71 2.91 -60.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431122110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.082 kcal (2) G-P(sol) polarization free energy of solvation -63.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds