Wall clock time and date at job start Mon Mar 30 2020 00:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47200 * 2 1 4 4 C 1.46904 * 111.00000 * 195.71620 * 3 2 1 5 5 C 1.52997 * 109.47010 * 66.04796 * 4 3 2 6 6 C 1.50701 * 109.46861 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00255 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00374 * 359.97438 * 8 6 5 10 10 C 1.46499 * 119.99989 * 179.97438 * 8 6 5 11 11 C 1.50704 * 109.47257 * 89.99772 * 10 8 6 12 12 H 1.08004 * 119.99795 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00290 * 179.97438 * 11 10 8 14 14 N 1.31510 * 120.00124 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00300 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46977 * 89.99776 * 15 13 11 17 17 H 1.48498 * 109.47639 * 210.00030 * 15 13 11 18 18 H 1.48503 * 109.46907 * 330.00335 * 15 13 11 19 19 C 1.46903 * 111.00162 * 71.75986 * 3 2 1 20 20 C 1.54038 * 113.81630 * 272.86851 * 19 3 2 21 21 O 1.44454 * 85.42160 * 223.23804 * 20 19 3 22 22 C 1.44172 * 93.38009 * 24.08774 * 21 20 19 23 23 H 1.08996 * 109.46918 * 293.79732 * 1 2 3 24 24 H 1.09001 * 109.46529 * 53.79413 * 1 2 3 25 25 H 1.09001 * 109.46723 * 173.79633 * 1 2 3 26 26 H 1.08995 * 109.47579 * 240.00020 * 2 1 3 27 27 H 1.08998 * 109.47172 * 119.99693 * 2 1 3 28 28 H 1.09005 * 109.46737 * 186.04655 * 4 3 2 29 29 H 1.08998 * 109.47045 * 306.03879 * 4 3 2 30 30 H 1.08999 * 109.46600 * 299.99536 * 5 4 3 31 31 H 1.08994 * 109.47256 * 59.99753 * 5 4 3 32 32 H 1.09007 * 109.46689 * 90.00090 * 9 8 6 33 33 H 1.08996 * 109.47617 * 210.00792 * 9 8 6 34 34 H 1.09005 * 109.46785 * 330.01159 * 9 8 6 35 35 H 1.08996 * 109.47499 * 209.99347 * 10 8 6 36 36 H 1.08993 * 109.47457 * 329.99761 * 10 8 6 37 37 H 0.96997 * 120.00863 * 180.02562 * 14 13 11 38 38 H 1.08999 * 112.99723 * 44.69084 * 19 3 2 39 39 H 1.09004 * 113.86155 * 337.33996 * 20 19 3 40 40 H 1.08997 * 113.86272 * 109.04650 * 20 19 3 41 41 H 1.09004 * 113.85949 * 221.77129 * 22 21 20 42 42 H 1.09000 * 113.98667 * 90.08200 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4399 1.4413 -0.3715 5 6 3.6045 0.9970 -1.8263 6 6 5.0614 1.0542 -2.2071 7 8 5.8868 1.4151 -1.3951 8 7 5.4471 0.7051 -3.4504 9 6 4.4501 0.2696 -4.4316 10 6 6.8634 0.7612 -3.8209 11 6 7.5144 -0.5640 -3.5191 12 1 6.9316 -1.3675 -3.0935 13 6 8.8541 -0.7507 -3.7863 14 7 9.5640 0.2278 -4.3040 15 14 9.6612 -2.3931 -3.4116 16 1 9.5557 -3.2789 -4.5989 17 1 11.0927 -2.1773 -3.0808 18 1 8.9768 -3.0291 -2.2573 19 6 1.7905 2.0245 1.3025 20 6 0.4038 2.6814 1.4375 21 8 1.1121 3.7798 2.0527 22 6 2.3565 3.4536 1.4020 23 1 -0.3633 0.4147 0.9403 24 1 -0.3632 0.6071 -0.8293 25 1 -0.3633 -1.0217 -0.1111 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8044 2.4625 -0.2599 29 1 4.0118 0.7785 0.2778 30 1 3.2399 -0.0241 -1.9377 31 1 3.0325 1.6599 -2.4755 32 1 4.0833 1.1342 -4.9850 33 1 4.9063 -0.4381 -5.1237 34 1 3.6187 -0.2110 -3.9159 35 1 6.9522 0.9754 -4.8859 36 1 7.3575 1.5471 -3.2498 37 1 10.5064 0.0964 -4.4924 38 1 2.0585 1.3853 2.1438 39 1 -0.0591 2.9342 0.4836 40 1 -0.2696 2.1550 2.1139 41 1 3.2286 3.5382 2.0505 42 1 2.4934 3.9419 0.4372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451290780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:52 Heat of formation + Delta-G solvation = -41.704096 kcal Electronic energy + Delta-G solvation = -21269.085980 eV Core-core repulsion = 18057.836486 eV Total energy + Delta-G solvation = -3211.249494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.67820 -39.04867 -36.99143 -34.81547 -32.70004 -31.93497 -30.45030 -28.21865 -27.20596 -26.60218 -25.71888 -23.80890 -22.53346 -21.41908 -20.08797 -18.37354 -16.93371 -16.78356 -16.54587 -16.29850 -15.70472 -15.27169 -15.18529 -14.56471 -14.36235 -14.16839 -13.98158 -13.23118 -12.88463 -12.64519 -12.37942 -12.28452 -12.15926 -11.98721 -11.83227 -11.78119 -11.40917 -11.16771 -11.10691 -10.98456 -10.85623 -10.60503 -10.51232 -10.17086 -9.83796 -9.63853 -8.90934 -8.56483 -8.44924 -7.64718 -6.05471 -4.10417 3.28471 3.34950 3.37791 3.44767 3.50025 3.56441 4.00873 4.12249 4.44089 4.77447 4.81068 4.97208 5.06078 5.14177 5.20226 5.24678 5.27166 5.29349 5.33572 5.38987 5.53956 5.60875 5.69119 5.73819 5.82624 5.89081 5.90888 5.93513 5.98780 6.06832 6.10648 6.21072 6.85451 6.88940 7.05580 7.43727 7.53406 7.90842 8.22390 8.41617 8.88897 9.08825 9.54750 11.02613 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.003743 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.957964 B = 7479.419919 C = 7658.830852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.042 3.958 3 N -0.532 5.532 4 C 0.069 3.931 5 C -0.135 4.135 6 C 0.504 3.496 7 O -0.546 6.546 8 N -0.603 5.603 9 C 0.084 3.916 10 C 0.245 3.755 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.061 3.939 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.012 3.988 20 C 0.050 3.950 21 O -0.386 6.386 22 C 0.043 3.957 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.326 1.187 6.383 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 N -0.258 5.258 4 C -0.059 4.059 5 C -0.175 4.175 6 C 0.290 3.710 7 O -0.424 6.424 8 N -0.335 5.335 9 C -0.060 4.060 10 C 0.125 3.875 11 C -0.565 4.565 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.097 4.097 20 C -0.027 4.027 21 O -0.304 6.304 22 C -0.034 4.034 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.024 1.901 6.571 20.217 hybrid contribution 1.046 -1.680 0.499 2.041 sum -17.979 0.221 7.071 19.320 Atomic orbital electron populations 1.21823 0.94911 1.01639 1.02205 1.22218 0.96109 0.88841 1.01443 1.62399 1.18645 1.17496 1.27252 1.21811 0.86262 1.02691 0.95124 1.21660 0.95272 1.03161 0.97439 1.20288 0.89903 0.78330 0.82478 1.90666 1.54415 1.47959 1.49360 1.48158 1.10205 1.64209 1.10919 1.21634 0.91964 0.99319 0.93093 1.19282 0.74180 0.98041 0.95970 1.21432 0.94697 0.98343 1.42064 0.92547 1.24937 0.97040 0.97055 0.95089 1.69927 1.08090 1.31687 1.43664 0.86500 0.78671 0.83672 0.78587 1.20623 1.21051 1.19950 1.25082 0.96846 0.96052 0.91720 1.24170 0.94571 0.85838 0.98103 1.89723 1.23222 1.52547 1.64891 1.24113 0.88806 0.92206 0.98273 0.92972 0.91656 0.92356 0.90159 0.94621 0.89729 0.93651 0.89565 0.88818 0.93701 0.90856 0.92465 0.95032 0.93842 0.92698 0.90459 0.89168 0.89569 0.89057 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.43 37.16 0.35 -0.78 16 2 C 0.04 0.40 5.56 -3.82 -0.02 0.38 16 3 N -0.53 -5.76 4.47 -234.55 -1.05 -6.81 16 4 C 0.07 0.93 4.09 -3.82 -0.02 0.91 16 5 C -0.13 -1.91 4.22 -27.88 -0.12 -2.03 16 6 C 0.50 10.23 7.67 -10.99 -0.08 10.15 16 7 O -0.55 -13.49 15.56 5.55 0.09 -13.40 16 8 N -0.60 -12.67 2.86 -182.95 -0.52 -13.20 16 9 C 0.08 1.30 10.24 59.85 0.61 1.92 16 10 C 0.24 6.41 5.16 -5.19 -0.03 6.39 16 11 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 12 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 19 C 0.01 0.12 3.32 -66.63 -0.22 -0.10 16 20 C 0.05 0.47 7.16 37.64 0.27 0.74 16 21 O -0.39 -4.66 12.46 -35.23 -0.44 -5.10 16 22 C 0.04 0.47 7.61 37.64 0.29 0.75 16 23 H 0.05 0.37 6.12 -51.93 -0.32 0.05 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.79 5.94 -51.93 -0.31 0.48 16 27 H 0.04 0.35 7.93 -51.93 -0.41 -0.06 16 28 H 0.08 1.20 6.42 -51.93 -0.33 0.87 16 29 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.09 1.09 5.55 -51.93 -0.29 0.81 16 31 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 34 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 35 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 0.79 7.97 -51.93 -0.41 0.38 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.66 7.61 -51.93 -0.40 0.27 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 0.99 7.63 -51.93 -0.40 0.59 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -33.11 336.99 -7.44 -40.55 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.92 Total: -2.70 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 0.61 Total: 4.68 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.84 Total: -45.92 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.35 Total: -18.50 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.11 -7.44 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451290780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.153 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds