Wall clock time and date at job start Mon Mar 30 2020 00:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47200 * 2 1 4 4 C 1.46904 * 111.00000 * 195.71620 * 3 2 1 5 5 C 1.52997 * 109.47010 * 66.04796 * 4 3 2 6 6 C 1.50701 * 109.46861 * 180.02562 * 5 4 3 7 7 O 1.21285 * 120.00255 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99989 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00374 * 359.97438 * 8 6 5 10 10 C 1.46499 * 119.99989 * 179.97438 * 8 6 5 11 11 C 1.50704 * 109.47257 * 89.99772 * 10 8 6 12 12 H 1.08004 * 119.99795 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00290 * 179.97438 * 11 10 8 14 14 N 1.31510 * 120.00124 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00300 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46977 * 89.99776 * 15 13 11 17 17 H 1.48498 * 109.47639 * 210.00030 * 15 13 11 18 18 H 1.48503 * 109.46907 * 330.00335 * 15 13 11 19 19 C 1.46903 * 111.00162 * 71.75986 * 3 2 1 20 20 C 1.54038 * 113.81630 * 272.86851 * 19 3 2 21 21 O 1.44454 * 85.42160 * 223.23804 * 20 19 3 22 22 C 1.44172 * 93.38009 * 24.08774 * 21 20 19 23 23 H 1.08996 * 109.46918 * 293.79732 * 1 2 3 24 24 H 1.09001 * 109.46529 * 53.79413 * 1 2 3 25 25 H 1.09001 * 109.46723 * 173.79633 * 1 2 3 26 26 H 1.08995 * 109.47579 * 240.00020 * 2 1 3 27 27 H 1.08998 * 109.47172 * 119.99693 * 2 1 3 28 28 H 1.09005 * 109.46737 * 186.04655 * 4 3 2 29 29 H 1.08998 * 109.47045 * 306.03879 * 4 3 2 30 30 H 1.08999 * 109.46600 * 299.99536 * 5 4 3 31 31 H 1.08994 * 109.47256 * 59.99753 * 5 4 3 32 32 H 1.09007 * 109.46689 * 90.00090 * 9 8 6 33 33 H 1.08996 * 109.47617 * 210.00792 * 9 8 6 34 34 H 1.09005 * 109.46785 * 330.01159 * 9 8 6 35 35 H 1.08996 * 109.47499 * 209.99347 * 10 8 6 36 36 H 1.08993 * 109.47457 * 329.99761 * 10 8 6 37 37 H 0.96997 * 120.00863 * 180.02562 * 14 13 11 38 38 H 1.08999 * 112.99723 * 44.69084 * 19 3 2 39 39 H 1.09004 * 113.86155 * 337.33996 * 20 19 3 40 40 H 1.08997 * 113.86272 * 109.04650 * 20 19 3 41 41 H 1.09004 * 113.85949 * 221.77129 * 22 21 20 42 42 H 1.09000 * 113.98667 * 90.08200 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4399 1.4413 -0.3715 5 6 3.6045 0.9970 -1.8263 6 6 5.0614 1.0542 -2.2071 7 8 5.8868 1.4151 -1.3951 8 7 5.4471 0.7051 -3.4504 9 6 4.4501 0.2696 -4.4316 10 6 6.8634 0.7612 -3.8209 11 6 7.5144 -0.5640 -3.5191 12 1 6.9316 -1.3675 -3.0935 13 6 8.8541 -0.7507 -3.7863 14 7 9.5640 0.2278 -4.3040 15 14 9.6612 -2.3931 -3.4116 16 1 9.5557 -3.2789 -4.5989 17 1 11.0927 -2.1773 -3.0808 18 1 8.9768 -3.0291 -2.2573 19 6 1.7905 2.0245 1.3025 20 6 0.4038 2.6814 1.4375 21 8 1.1121 3.7798 2.0527 22 6 2.3565 3.4536 1.4020 23 1 -0.3633 0.4147 0.9403 24 1 -0.3632 0.6071 -0.8293 25 1 -0.3633 -1.0217 -0.1111 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8044 2.4625 -0.2599 29 1 4.0118 0.7785 0.2778 30 1 3.2399 -0.0241 -1.9377 31 1 3.0325 1.6599 -2.4755 32 1 4.0833 1.1342 -4.9850 33 1 4.9063 -0.4381 -5.1237 34 1 3.6187 -0.2110 -3.9159 35 1 6.9522 0.9754 -4.8859 36 1 7.3575 1.5471 -3.2498 37 1 10.5064 0.0964 -4.4924 38 1 2.0585 1.3853 2.1438 39 1 -0.0591 2.9342 0.4836 40 1 -0.2696 2.1550 2.1139 41 1 3.2286 3.5382 2.0505 42 1 2.4934 3.9419 0.4372 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451290780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:52 Heat of formation + Delta-G solvation = -66.109010 kcal Electronic energy + Delta-G solvation = -21270.144257 eV Core-core repulsion = 18057.836486 eV Total energy + Delta-G solvation = -3212.307771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54429 -40.61886 -37.95720 -36.57053 -34.75276 -33.01856 -31.38578 -29.85903 -28.38053 -27.39581 -27.23529 -25.36525 -23.79306 -22.48883 -20.94273 -19.90316 -18.70999 -18.13336 -17.58069 -17.41149 -16.92791 -16.76289 -16.63277 -16.07408 -15.48940 -15.29289 -14.93793 -14.51255 -14.16178 -13.99271 -13.65236 -13.58409 -13.45032 -13.31064 -12.98994 -12.91687 -12.81367 -12.61393 -12.51206 -12.22119 -12.15364 -12.06665 -11.77910 -11.71316 -11.40705 -10.67014 -10.65044 -10.59281 -9.47290 -9.40486 -8.23194 -6.38472 1.35589 1.38669 1.48805 1.85065 2.26259 2.40508 2.73854 2.88179 3.06221 3.20869 3.79856 3.92188 4.00984 4.09779 4.22993 4.25773 4.40499 4.46429 4.49938 4.54968 4.59379 4.72621 4.74036 4.79460 4.89482 4.97188 4.98811 5.02934 5.05974 5.08898 5.13813 5.18092 5.23560 5.44210 5.55689 5.84207 5.92025 6.05186 6.05569 6.69087 6.80232 7.27627 7.49205 8.83843 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.003743 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.957964 B = 7479.419919 C = 7658.830852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.036 3.964 3 N -0.523 5.523 4 C 0.075 3.925 5 C -0.115 4.115 6 C 0.493 3.507 7 O -0.601 6.601 8 N -0.611 5.611 9 C 0.079 3.921 10 C 0.258 3.742 11 C -0.544 4.544 12 H 0.053 0.947 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.273 1.273 19 C 0.011 3.989 20 C 0.058 3.942 21 O -0.408 6.408 22 C 0.038 3.962 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.023 0.977 36 H -0.003 1.003 37 H 0.267 0.733 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.707 -0.373 6.223 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 N -0.249 5.249 4 C -0.053 4.053 5 C -0.155 4.155 6 C 0.282 3.718 7 O -0.484 6.484 8 N -0.342 5.342 9 C -0.063 4.063 10 C 0.136 3.864 11 C -0.582 4.582 12 H 0.071 0.929 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.793 3.207 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.097 4.097 20 C -0.019 4.019 21 O -0.326 6.326 22 C -0.039 4.039 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.041 0.959 36 H 0.015 0.985 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.109 0.891 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.467 0.329 6.385 22.398 hybrid contribution 1.757 -1.149 0.549 2.170 sum -19.709 -0.821 6.934 20.910 Atomic orbital electron populations 1.21782 0.93021 1.02560 1.02613 1.22348 0.97624 0.87799 1.01329 1.62436 1.16326 1.18497 1.27631 1.21630 0.87770 1.01414 0.94458 1.21572 0.90505 1.05312 0.98070 1.21388 0.92198 0.76732 0.81434 1.90636 1.56596 1.50235 1.50887 1.48199 1.09091 1.64421 1.12526 1.21941 0.91447 1.00538 0.92419 1.18744 0.77405 0.95812 0.94411 1.21713 0.95370 0.98953 1.42181 0.92857 1.25875 0.97674 1.00987 0.94686 1.70048 1.08526 1.33863 1.44432 0.85404 0.77402 0.79050 0.78878 1.18696 1.20659 1.19785 1.25101 0.97700 0.95537 0.91394 1.24304 0.94046 0.84678 0.98831 1.89704 1.23859 1.53650 1.65432 1.24152 0.88704 0.92838 0.98175 0.92432 0.91419 0.91161 0.89997 0.95080 0.90923 0.95975 0.87098 0.86048 0.91099 0.91708 0.88612 0.95918 0.98525 0.92382 0.90471 0.88381 0.87549 0.89125 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.43 71.98 0.68 -1.01 16 2 C 0.04 0.60 5.56 86.30 0.48 1.08 16 3 N -0.52 -10.29 4.47 -907.02 -4.06 -14.35 16 4 C 0.08 1.98 4.09 86.30 0.35 2.33 16 5 C -0.11 -3.01 4.22 29.85 0.13 -2.89 16 6 C 0.49 20.09 7.67 87.66 0.67 20.76 16 7 O -0.60 -30.97 15.56 -3.04 -0.05 -31.02 16 8 N -0.61 -25.67 2.86 -851.13 -2.43 -28.10 16 9 C 0.08 2.25 10.24 127.77 1.31 3.56 16 10 C 0.26 14.03 5.16 85.63 0.44 14.47 16 11 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 12 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 13 C 0.01 0.39 5.46 84.65 0.46 0.85 16 14 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 15 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 16 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 C 0.01 0.22 3.32 45.61 0.15 0.37 16 20 C 0.06 0.95 7.16 72.30 0.52 1.47 16 21 O -0.41 -9.39 12.46 -148.98 -1.86 -11.25 16 22 C 0.04 0.81 7.61 72.29 0.55 1.36 16 23 H 0.06 0.62 6.12 -2.39 -0.01 0.61 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.08 1.33 5.94 -2.39 -0.01 1.32 16 27 H 0.03 0.55 7.93 -2.39 -0.02 0.53 16 28 H 0.07 2.08 6.42 -2.38 -0.02 2.06 16 29 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 30 H 0.11 2.42 5.55 -2.39 -0.01 2.40 16 31 H 0.12 2.60 8.11 -2.39 -0.02 2.58 16 32 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 34 H 0.10 2.00 6.44 -2.38 -0.02 1.99 16 35 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 36 H 0.00 -0.21 7.42 -2.39 -0.02 -0.23 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.08 1.49 7.97 -2.39 -0.02 1.47 16 39 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.11 1.31 7.61 -2.39 -0.02 1.30 16 41 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.09 1.92 7.63 -2.39 -0.02 1.90 16 Total: -1.00 -74.66 336.99 0.89 -73.77 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.99 Total: 9.16 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.98 Total: 11.08 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -6.21 Total: -98.71 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.90 Total: -42.27 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.66 0.89 -73.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451290780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.664 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds