Wall clock time and date at job start Mon Mar 30 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09009 * 110.43442 * 31.08569 * 4 3 2 6 6 C 1.54891 * 110.48315 * 268.54954 * 4 3 2 7 7 C 1.54893 * 102.74452 * 203.37516 * 6 4 3 8 8 C 1.54269 * 104.19649 * 37.94204 * 7 6 4 9 9 C 1.53873 * 106.59586 * 336.38974 * 8 7 6 10 10 H 1.08997 * 110.03206 * 119.28876 * 9 8 7 11 11 N 1.46503 * 110.02991 * 240.71313 * 9 8 7 12 12 C 1.34777 * 119.99990 * 272.16943 * 11 9 8 13 13 O 1.21582 * 120.00339 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99633 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99949 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47407 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46939 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00310 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99594 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00484 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00001 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47144 * 59.99579 * 21 19 17 23 23 H 1.48503 * 109.47477 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46960 * 299.99877 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 30 30 H 1.08994 * 110.75758 * 321.68644 * 6 4 3 31 31 H 1.08996 * 110.75780 * 85.06346 * 6 4 3 32 32 H 1.09000 * 110.48690 * 156.61934 * 7 6 4 33 33 H 1.09004 * 110.48994 * 279.13009 * 7 6 4 34 34 H 1.09001 * 110.03484 * 95.67209 * 8 7 6 35 35 H 1.08999 * 110.03214 * 217.10260 * 8 7 6 36 36 H 0.97003 * 120.00332 * 92.16968 * 11 9 8 37 37 H 0.97003 * 120.00688 * 359.97438 * 14 12 11 38 38 H 1.09004 * 109.47404 * 299.99905 * 15 14 12 39 39 H 1.09001 * 109.47526 * 59.99570 * 15 14 12 40 40 H 1.08997 * 109.47205 * 299.99798 * 16 15 14 41 41 H 1.08997 * 109.47182 * 60.00150 * 16 15 14 42 42 H 0.97000 * 120.00173 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8792 0.6183 -0.5283 6 6 3.9689 1.5394 1.4497 7 6 5.3360 2.2447 1.2689 8 6 5.0778 3.2940 0.1679 9 6 3.8664 2.7951 -0.6392 10 1 3.0544 3.5198 -0.5802 11 7 4.2485 2.5816 -2.0373 12 6 4.1764 3.5988 -2.9185 13 8 3.7937 4.6935 -2.5534 14 7 4.5274 3.4021 -4.2048 15 6 4.4484 4.5076 -5.1629 16 6 4.9003 4.0211 -6.5414 17 6 4.8184 5.1582 -7.5270 18 1 4.4777 6.1304 -7.2028 19 6 5.1784 4.9573 -8.8427 20 7 5.5928 3.7733 -9.2376 21 14 5.0776 6.3669 -10.0643 22 1 5.9595 7.4743 -9.6161 23 1 5.5161 5.8947 -11.4023 24 1 3.6764 6.8520 -10.1458 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.3059 2.1367 2.0756 31 1 4.1013 0.5415 1.8677 32 1 5.6398 2.7312 2.1958 33 1 6.0943 1.5305 0.9478 34 1 4.8536 4.2608 0.6187 35 1 5.9500 3.3772 -0.4805 36 1 4.5535 1.7081 -2.3288 37 1 4.8324 2.5286 -4.4963 38 1 3.4201 4.8643 -5.2222 39 1 5.0964 5.3202 -4.8344 40 1 5.9286 3.6648 -6.4818 41 1 4.2526 3.2085 -6.8702 42 1 5.8464 3.6320 -10.1632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454770641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:12 Heat of formation + Delta-G solvation = -100.628027 kcal Electronic energy + Delta-G solvation = -20680.549413 eV Core-core repulsion = 17466.744785 eV Total energy + Delta-G solvation = -3213.804628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07021 -38.74599 -36.58145 -34.74220 -33.48161 -32.70333 -31.44337 -29.62023 -27.94563 -27.16352 -24.52724 -23.06413 -21.44717 -21.15725 -20.61435 -20.02362 -18.14043 -17.15122 -16.50128 -16.25198 -15.81628 -15.17027 -14.79912 -14.68908 -14.49414 -13.74147 -13.68582 -13.50119 -13.26146 -13.10009 -12.82823 -12.30729 -12.22133 -11.92170 -11.69575 -11.41686 -11.31091 -11.16374 -10.98987 -10.87352 -10.72314 -10.62322 -10.27667 -9.91811 -9.77856 -9.50867 -9.24231 -8.93141 -8.45363 -8.20320 -6.06779 -4.09305 2.99834 3.33438 3.36850 3.40443 3.46388 3.64473 4.26087 4.40207 4.45900 4.67919 4.77142 4.80445 4.88008 4.97496 5.09883 5.21850 5.25395 5.30241 5.38618 5.39640 5.49662 5.61552 5.65897 5.78441 5.82946 5.92824 6.05422 6.08251 6.34940 6.44231 6.69991 6.82090 7.03433 7.05571 7.28519 7.60098 7.66651 7.92624 8.29184 8.49025 8.95768 9.06455 9.55264 11.04895 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.003142 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.423857 B = 8910.776385 C = 9487.139027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.375 6.375 4 C 0.079 3.921 5 H 0.071 0.929 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.133 4.133 9 C 0.164 3.836 10 H 0.102 0.898 11 N -0.747 5.747 12 C 0.700 3.300 13 O -0.596 6.596 14 N -0.739 5.739 15 C 0.140 3.860 16 C 0.013 3.987 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.391 0.609 37 H 0.392 0.608 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 -10.770 21.408 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.294 6.294 4 C 0.020 3.980 5 H 0.088 0.912 6 C -0.181 4.181 7 C -0.160 4.160 8 C -0.172 4.172 9 C 0.058 3.942 10 H 0.120 0.880 11 N -0.403 5.403 12 C 0.400 3.600 13 O -0.474 6.474 14 N -0.393 5.393 15 C 0.017 3.983 16 C -0.024 4.024 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.225 0.775 37 H 0.225 0.775 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.735 -9.648 21.538 23.894 hybrid contribution 0.465 -0.453 -1.068 1.250 sum -3.271 -10.101 20.470 23.060 Atomic orbital electron populations 1.21746 0.93722 1.02163 1.03313 1.22495 0.95708 0.83860 0.99861 1.87979 1.20231 1.26290 1.94898 1.23222 0.81516 0.97468 0.95746 0.91154 1.22933 0.97391 1.01180 0.96640 1.22293 0.96546 0.98044 0.99115 1.22552 0.98312 0.99071 0.97256 1.21317 0.97225 0.96184 0.79446 0.87986 1.45248 1.73202 1.12902 1.08951 1.16051 0.78696 0.84195 0.81105 1.90884 1.53978 1.23909 1.78660 1.45531 1.70576 1.15569 1.07596 1.21580 1.00653 0.87279 0.88741 1.19316 0.96911 0.97394 0.88785 1.21028 1.44648 0.96639 0.93645 0.92255 1.24994 0.95026 0.95835 0.98436 1.69947 1.44501 1.21813 1.17176 0.86568 0.78636 0.82301 0.80000 1.20105 1.21277 1.20097 0.91873 0.91189 0.91659 0.93534 0.93385 0.90090 0.91258 0.91155 0.91438 0.90681 0.90720 0.77540 0.77492 0.92814 0.92819 0.96009 0.96012 0.92831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16 2 C 0.06 0.49 6.52 37.16 0.24 0.73 16 3 O -0.37 -4.27 10.05 -35.23 -0.35 -4.62 16 4 C 0.08 0.77 3.02 -25.08 -0.08 0.70 16 5 H 0.07 0.59 7.46 -51.92 -0.39 0.20 16 6 C -0.14 -1.14 6.62 -24.74 -0.16 -1.30 16 7 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 8 C -0.13 -1.43 6.59 -25.61 -0.17 -1.60 16 9 C 0.16 2.03 3.00 -66.82 -0.20 1.83 16 10 H 0.10 1.57 7.49 -51.93 -0.39 1.18 16 11 N -0.75 -10.00 4.99 -57.59 -0.29 -10.29 16 12 C 0.70 12.73 8.56 -86.92 -0.74 11.99 16 13 O -0.60 -13.27 16.00 5.29 0.08 -13.19 16 14 N -0.74 -13.50 5.56 -65.22 -0.36 -13.86 16 15 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16 16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 21 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.39 8.10 -51.93 -0.42 -0.04 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 36 H 0.39 4.10 8.38 -40.82 -0.34 3.76 16 37 H 0.39 6.13 8.49 -40.82 -0.35 5.79 16 38 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -32.98 347.16 -8.78 -41.76 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.33 Total: 3.75 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.48 Total: 0.27 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.09 Total: -49.79 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.27 Total: -17.81 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.98 -8.78 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454770641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.865 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds