Wall clock time and date at job start Mon Mar 30 2020 01:10:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.42906 * 109.47321 * 2 1
4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1
5 5 H 1.09009 * 110.43442 * 31.08569 * 4 3 2
6 6 C 1.54891 * 110.48315 * 268.54954 * 4 3 2
7 7 C 1.54893 * 102.74452 * 203.37516 * 6 4 3
8 8 C 1.54269 * 104.19649 * 37.94204 * 7 6 4
9 9 C 1.53873 * 106.59586 * 336.38974 * 8 7 6
10 10 H 1.08997 * 110.03206 * 119.28876 * 9 8 7
11 11 N 1.46503 * 110.02991 * 240.71313 * 9 8 7
12 12 C 1.34777 * 119.99990 * 272.16943 * 11 9 8
13 13 O 1.21582 * 120.00339 * 359.97438 * 12 11 9
14 14 N 1.34775 * 119.99633 * 180.02562 * 12 11 9
15 15 C 1.46502 * 119.99949 * 179.97438 * 14 12 11
16 16 C 1.53000 * 109.47407 * 179.97438 * 15 14 12
17 17 C 1.50702 * 109.46939 * 179.97438 * 16 15 14
18 18 H 1.07992 * 120.00310 * 359.97438 * 17 16 15
19 19 C 1.37876 * 119.99594 * 179.97438 * 17 16 15
20 20 N 1.31516 * 120.00484 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 120.00001 * 180.02562 * 19 17 16
22 22 H 1.48493 * 109.47144 * 59.99579 * 21 19 17
23 23 H 1.48503 * 109.47477 * 180.02562 * 21 19 17
24 24 H 1.48502 * 109.46960 * 299.99877 * 21 19 17
25 25 H 1.09002 * 109.47153 * 299.99798 * 1 2 3
26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.47261 * 59.99970 * 1 2 3
28 28 H 1.08996 * 109.47853 * 120.00174 * 2 1 3
29 29 H 1.09002 * 109.47153 * 240.00202 * 2 1 3
30 30 H 1.08994 * 110.75758 * 321.68644 * 6 4 3
31 31 H 1.08996 * 110.75780 * 85.06346 * 6 4 3
32 32 H 1.09000 * 110.48690 * 156.61934 * 7 6 4
33 33 H 1.09004 * 110.48994 * 279.13009 * 7 6 4
34 34 H 1.09001 * 110.03484 * 95.67209 * 8 7 6
35 35 H 1.08999 * 110.03214 * 217.10260 * 8 7 6
36 36 H 0.97003 * 120.00332 * 92.16968 * 11 9 8
37 37 H 0.97003 * 120.00688 * 359.97438 * 14 12 11
38 38 H 1.09004 * 109.47404 * 299.99905 * 15 14 12
39 39 H 1.09001 * 109.47526 * 59.99570 * 15 14 12
40 40 H 1.08997 * 109.47205 * 299.99798 * 16 15 14
41 41 H 1.08997 * 109.47182 * 60.00150 * 16 15 14
42 42 H 0.97000 * 120.00173 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4602 -0.0006
5 1 3.8792 0.6183 -0.5283
6 6 3.9689 1.5394 1.4497
7 6 5.3360 2.2447 1.2689
8 6 5.0778 3.2940 0.1679
9 6 3.8664 2.7951 -0.6392
10 1 3.0544 3.5198 -0.5802
11 7 4.2485 2.5816 -2.0373
12 6 4.1764 3.5988 -2.9185
13 8 3.7937 4.6935 -2.5534
14 7 4.5274 3.4021 -4.2048
15 6 4.4484 4.5076 -5.1629
16 6 4.9003 4.0211 -6.5414
17 6 4.8184 5.1582 -7.5270
18 1 4.4777 6.1304 -7.2028
19 6 5.1784 4.9573 -8.8427
20 7 5.5928 3.7733 -9.2376
21 14 5.0776 6.3669 -10.0643
22 1 5.9595 7.4743 -9.6161
23 1 5.5161 5.8947 -11.4023
24 1 3.6764 6.8520 -10.1458
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 -0.8900
28 1 1.8934 -0.5138 0.8899
29 1 1.8933 -0.5138 -0.8900
30 1 3.3059 2.1367 2.0756
31 1 4.1013 0.5415 1.8677
32 1 5.6398 2.7312 2.1958
33 1 6.0943 1.5305 0.9478
34 1 4.8536 4.2608 0.6187
35 1 5.9500 3.3772 -0.4805
36 1 4.5535 1.7081 -2.3288
37 1 4.8324 2.5286 -4.4963
38 1 3.4201 4.8643 -5.2222
39 1 5.0964 5.3202 -4.8344
40 1 5.9286 3.6648 -6.4818
41 1 4.2526 3.2085 -6.8702
42 1 5.8464 3.6320 -10.1632
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000454770641.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:12
Heat of formation + Delta-G solvation = -100.628027 kcal
Electronic energy + Delta-G solvation = -20680.549413 eV
Core-core repulsion = 17466.744785 eV
Total energy + Delta-G solvation = -3213.804628 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.07021 -38.74599 -36.58145 -34.74220 -33.48161 -32.70333 -31.44337 -29.62023
-27.94563 -27.16352 -24.52724 -23.06413 -21.44717 -21.15725 -20.61435 -20.02362
-18.14043 -17.15122 -16.50128 -16.25198 -15.81628 -15.17027 -14.79912 -14.68908
-14.49414 -13.74147 -13.68582 -13.50119 -13.26146 -13.10009 -12.82823 -12.30729
-12.22133 -11.92170 -11.69575 -11.41686 -11.31091 -11.16374 -10.98987 -10.87352
-10.72314 -10.62322 -10.27667 -9.91811 -9.77856 -9.50867 -9.24231 -8.93141
-8.45363 -8.20320 -6.06779 -4.09305 2.99834 3.33438 3.36850 3.40443
3.46388 3.64473 4.26087 4.40207 4.45900 4.67919 4.77142 4.80445
4.88008 4.97496 5.09883 5.21850 5.25395 5.30241 5.38618 5.39640
5.49662 5.61552 5.65897 5.78441 5.82946 5.92824 6.05422 6.08251
6.34940 6.44231 6.69991 6.82090 7.03433 7.05571 7.28519 7.60098
7.66651 7.92624 8.29184 8.49025 8.95768 9.06455 9.55264 11.04895
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.026854 B = 0.003142 C = 0.002951
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.423857 B = 8910.776385 C = 9487.139027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.057 3.943
3 O -0.375 6.375
4 C 0.079 3.921
5 H 0.071 0.929
6 C -0.143 4.143
7 C -0.122 4.122
8 C -0.133 4.133
9 C 0.164 3.836
10 H 0.102 0.898
11 N -0.747 5.747
12 C 0.700 3.300
13 O -0.596 6.596
14 N -0.739 5.739
15 C 0.140 3.860
16 C 0.013 3.987
17 C -0.521 4.521
18 H 0.059 0.941
19 C 0.059 3.941
20 N -0.895 5.895
21 Si 0.897 3.103
22 H -0.276 1.276
23 H -0.287 1.287
24 H -0.275 1.275
25 H 0.062 0.938
26 H 0.069 0.931
27 H 0.064 0.936
28 H 0.046 0.954
29 H 0.048 0.952
30 H 0.080 0.920
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.067 0.933
34 H 0.074 0.926
35 H 0.074 0.926
36 H 0.391 0.609
37 H 0.392 0.608
38 H 0.053 0.947
39 H 0.053 0.947
40 H 0.022 0.978
41 H 0.022 0.978
42 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.305 -10.770 21.408 24.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.019 4.019
3 O -0.294 6.294
4 C 0.020 3.980
5 H 0.088 0.912
6 C -0.181 4.181
7 C -0.160 4.160
8 C -0.172 4.172
9 C 0.058 3.942
10 H 0.120 0.880
11 N -0.403 5.403
12 C 0.400 3.600
13 O -0.474 6.474
14 N -0.393 5.393
15 C 0.017 3.983
16 C -0.024 4.024
17 C -0.560 4.560
18 H 0.077 0.923
19 C -0.143 4.143
20 N -0.534 5.534
21 Si 0.725 3.275
22 H -0.201 1.201
23 H -0.213 1.213
24 H -0.201 1.201
25 H 0.081 0.919
26 H 0.088 0.912
27 H 0.083 0.917
28 H 0.065 0.935
29 H 0.066 0.934
30 H 0.099 0.901
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.086 0.914
34 H 0.093 0.907
35 H 0.093 0.907
36 H 0.225 0.775
37 H 0.225 0.775
38 H 0.072 0.928
39 H 0.072 0.928
40 H 0.040 0.960
41 H 0.040 0.960
42 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -3.735 -9.648 21.538 23.894
hybrid contribution 0.465 -0.453 -1.068 1.250
sum -3.271 -10.101 20.470 23.060
Atomic orbital electron populations
1.21746 0.93722 1.02163 1.03313 1.22495 0.95708 0.83860 0.99861
1.87979 1.20231 1.26290 1.94898 1.23222 0.81516 0.97468 0.95746
0.91154 1.22933 0.97391 1.01180 0.96640 1.22293 0.96546 0.98044
0.99115 1.22552 0.98312 0.99071 0.97256 1.21317 0.97225 0.96184
0.79446 0.87986 1.45248 1.73202 1.12902 1.08951 1.16051 0.78696
0.84195 0.81105 1.90884 1.53978 1.23909 1.78660 1.45531 1.70576
1.15569 1.07596 1.21580 1.00653 0.87279 0.88741 1.19316 0.96911
0.97394 0.88785 1.21028 1.44648 0.96639 0.93645 0.92255 1.24994
0.95026 0.95835 0.98436 1.69947 1.44501 1.21813 1.17176 0.86568
0.78636 0.82301 0.80000 1.20105 1.21277 1.20097 0.91873 0.91189
0.91659 0.93534 0.93385 0.90090 0.91258 0.91155 0.91438 0.90681
0.90720 0.77540 0.77492 0.92814 0.92819 0.96009 0.96012 0.92831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.18 10.28 37.16 0.38 -0.80 16
2 C 0.06 0.49 6.52 37.16 0.24 0.73 16
3 O -0.37 -4.27 10.05 -35.23 -0.35 -4.62 16
4 C 0.08 0.77 3.02 -25.08 -0.08 0.70 16
5 H 0.07 0.59 7.46 -51.92 -0.39 0.20 16
6 C -0.14 -1.14 6.62 -24.74 -0.16 -1.30 16
7 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16
8 C -0.13 -1.43 6.59 -25.61 -0.17 -1.60 16
9 C 0.16 2.03 3.00 -66.82 -0.20 1.83 16
10 H 0.10 1.57 7.49 -51.93 -0.39 1.18 16
11 N -0.75 -10.00 4.99 -57.59 -0.29 -10.29 16
12 C 0.70 12.73 8.56 -86.92 -0.74 11.99 16
13 O -0.60 -13.27 16.00 5.29 0.08 -13.19 16
14 N -0.74 -13.50 5.56 -65.22 -0.36 -13.86 16
15 C 0.14 3.10 5.61 -4.04 -0.02 3.08 16
16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16
17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16
18 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16
19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
20 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16
21 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16
22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
29 H 0.05 0.39 8.10 -51.93 -0.42 -0.04 16
30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
35 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16
36 H 0.39 4.10 8.38 -40.82 -0.34 3.76 16
37 H 0.39 6.13 8.49 -40.82 -0.35 5.79 16
38 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16
39 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16
41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
LS Contribution 347.16 15.07 5.23 5.23
Total: -1.00 -32.98 347.16 -8.78 -41.76
By element:
Atomic # 1 Polarization: 11.09 SS G_CDS: -7.33 Total: 3.75 kcal
Atomic # 6 Polarization: 1.74 SS G_CDS: -1.48 Total: 0.27 kcal
Atomic # 7 Polarization: -49.88 SS G_CDS: 0.09 Total: -49.79 kcal
Atomic # 8 Polarization: -17.54 SS G_CDS: -0.27 Total: -17.81 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -32.98 -8.78 -41.76 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000454770641.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.865 kcal
(2) G-P(sol) polarization free energy of solvation -32.982 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.847 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds