Wall clock time and date at job start Mon Mar 30 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09009 * 110.43442 * 31.08569 * 4 3 2 6 6 C 1.54891 * 110.48315 * 268.54954 * 4 3 2 7 7 C 1.54893 * 102.74452 * 203.37516 * 6 4 3 8 8 C 1.54269 * 104.19649 * 37.94204 * 7 6 4 9 9 C 1.53873 * 106.59586 * 336.38974 * 8 7 6 10 10 H 1.08997 * 110.03206 * 119.28876 * 9 8 7 11 11 N 1.46503 * 110.02991 * 240.71313 * 9 8 7 12 12 C 1.34777 * 119.99990 * 272.16943 * 11 9 8 13 13 O 1.21582 * 120.00339 * 359.97438 * 12 11 9 14 14 N 1.34775 * 119.99633 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99949 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47407 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46939 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00310 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99594 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00484 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00001 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47144 * 59.99579 * 21 19 17 23 23 H 1.48503 * 109.47477 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46960 * 299.99877 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 30 30 H 1.08994 * 110.75758 * 321.68644 * 6 4 3 31 31 H 1.08996 * 110.75780 * 85.06346 * 6 4 3 32 32 H 1.09000 * 110.48690 * 156.61934 * 7 6 4 33 33 H 1.09004 * 110.48994 * 279.13009 * 7 6 4 34 34 H 1.09001 * 110.03484 * 95.67209 * 8 7 6 35 35 H 1.08999 * 110.03214 * 217.10260 * 8 7 6 36 36 H 0.97003 * 120.00332 * 92.16968 * 11 9 8 37 37 H 0.97003 * 120.00688 * 359.97438 * 14 12 11 38 38 H 1.09004 * 109.47404 * 299.99905 * 15 14 12 39 39 H 1.09001 * 109.47526 * 59.99570 * 15 14 12 40 40 H 1.08997 * 109.47205 * 299.99798 * 16 15 14 41 41 H 1.08997 * 109.47182 * 60.00150 * 16 15 14 42 42 H 0.97000 * 120.00173 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8792 0.6183 -0.5283 6 6 3.9689 1.5394 1.4497 7 6 5.3360 2.2447 1.2689 8 6 5.0778 3.2940 0.1679 9 6 3.8664 2.7951 -0.6392 10 1 3.0544 3.5198 -0.5802 11 7 4.2485 2.5816 -2.0373 12 6 4.1764 3.5988 -2.9185 13 8 3.7937 4.6935 -2.5534 14 7 4.5274 3.4021 -4.2048 15 6 4.4484 4.5076 -5.1629 16 6 4.9003 4.0211 -6.5414 17 6 4.8184 5.1582 -7.5270 18 1 4.4777 6.1304 -7.2028 19 6 5.1784 4.9573 -8.8427 20 7 5.5928 3.7733 -9.2376 21 14 5.0776 6.3669 -10.0643 22 1 5.9595 7.4743 -9.6161 23 1 5.5161 5.8947 -11.4023 24 1 3.6764 6.8520 -10.1458 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.3059 2.1367 2.0756 31 1 4.1013 0.5415 1.8677 32 1 5.6398 2.7312 2.1958 33 1 6.0943 1.5305 0.9478 34 1 4.8536 4.2608 0.6187 35 1 5.9500 3.3772 -0.4805 36 1 4.5535 1.7081 -2.3288 37 1 4.8324 2.5286 -4.4963 38 1 3.4201 4.8643 -5.2222 39 1 5.0964 5.3202 -4.8344 40 1 5.9286 3.6648 -6.4818 41 1 4.2526 3.2085 -6.8702 42 1 5.8464 3.6320 -10.1632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454770641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:12 Heat of formation + Delta-G solvation = -123.783847 kcal Electronic energy + Delta-G solvation = -20681.553525 eV Core-core repulsion = 17466.744785 eV Total energy + Delta-G solvation = -3214.808740 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.29376 -39.82347 -37.48668 -36.49955 -34.92590 -34.48173 -32.09781 -31.46336 -28.80753 -28.20108 -26.44046 -23.72362 -23.08047 -22.31482 -21.84496 -21.07219 -19.50764 -18.46312 -17.97581 -17.54357 -16.63655 -16.50187 -16.47091 -16.10600 -15.65481 -15.17464 -14.98257 -14.64104 -14.37042 -14.26973 -13.93997 -13.59751 -13.21911 -13.00845 -12.93438 -12.80884 -12.53284 -12.39021 -12.22229 -12.09856 -12.00701 -11.72258 -11.58453 -11.51625 -11.49019 -11.21666 -10.61223 -10.58143 -10.25219 -9.71414 -8.23770 -6.34167 1.41984 1.44669 1.52342 1.71736 2.16123 2.41500 2.68454 3.10913 3.33227 3.51431 3.74416 3.94578 4.17361 4.20256 4.28790 4.44931 4.47842 4.49038 4.50539 4.51773 4.55928 4.65666 4.83927 4.86296 4.98393 5.02187 5.04253 5.16525 5.19096 5.26764 5.31339 5.36790 5.51281 5.58591 5.59410 5.78875 6.03245 6.17472 6.32662 6.78625 7.12681 7.35078 7.60273 8.87994 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.003142 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.423857 B = 8910.776385 C = 9487.139027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.403 6.403 4 C 0.083 3.917 5 H 0.091 0.909 6 C -0.135 4.135 7 C -0.112 4.112 8 C -0.132 4.132 9 C 0.158 3.842 10 H 0.065 0.935 11 N -0.726 5.726 12 C 0.698 3.302 13 O -0.639 6.639 14 N -0.733 5.733 15 C 0.161 3.839 16 C 0.025 3.975 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.008 3.992 20 N -0.926 5.926 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.269 1.269 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.409 0.591 37 H 0.407 0.593 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.010 0.990 41 H 0.008 0.992 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.868 -12.022 22.301 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.323 6.323 4 C 0.024 3.976 5 H 0.109 0.891 6 C -0.173 4.173 7 C -0.149 4.149 8 C -0.171 4.171 9 C 0.052 3.948 10 H 0.083 0.917 11 N -0.382 5.382 12 C 0.398 3.602 13 O -0.521 6.521 14 N -0.388 5.388 15 C 0.036 3.964 16 C -0.012 4.012 17 C -0.587 4.587 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.194 1.194 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.246 0.754 37 H 0.242 0.758 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.288 -10.965 22.463 25.212 hybrid contribution 0.298 -0.104 -1.308 1.346 sum -2.990 -11.069 21.155 24.062 Atomic orbital electron populations 1.21780 0.93587 1.03285 1.02317 1.22695 0.95937 0.82765 1.01102 1.87956 1.21041 1.28221 1.95125 1.23252 0.81240 0.96148 0.96939 0.89108 1.22904 0.96857 1.02454 0.95113 1.22267 0.97013 0.97309 0.98356 1.22496 0.96945 0.99738 0.97907 1.21476 0.96981 0.97446 0.78901 0.91690 1.45072 1.71830 1.12511 1.08798 1.16174 0.78300 0.84481 0.81238 1.90855 1.55864 1.26040 1.79358 1.45207 1.70871 1.15341 1.07338 1.21068 0.99343 0.87927 0.88038 1.19112 0.95814 0.96288 0.89993 1.21445 1.45045 0.97410 0.94813 0.92348 1.25865 0.94403 0.98506 1.00317 1.70049 1.45015 1.23688 1.17830 0.85499 0.78945 0.79061 0.77552 1.19321 1.20477 1.19393 0.92127 0.89013 0.93391 0.91466 0.92821 0.90803 0.88729 0.89892 0.89815 0.91847 0.91693 0.75431 0.75784 0.94104 0.93853 0.97191 0.97346 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.77 6.52 71.98 0.47 1.24 16 3 O -0.40 -8.76 10.05 -148.98 -1.50 -10.26 16 4 C 0.08 1.46 3.02 31.67 0.10 1.56 16 5 H 0.09 1.23 7.46 -2.38 -0.02 1.22 16 6 C -0.14 -1.78 6.62 31.89 0.21 -1.57 16 7 C -0.11 -1.48 6.83 31.67 0.22 -1.26 16 8 C -0.13 -2.77 6.59 31.32 0.21 -2.56 16 9 C 0.16 3.86 3.00 45.71 0.14 4.00 16 10 H 0.06 2.10 7.49 -2.39 -0.02 2.09 16 11 N -0.73 -19.05 4.99 -454.37 -2.27 -21.31 16 12 C 0.70 25.66 8.56 179.05 1.53 27.20 16 13 O -0.64 -29.35 16.00 -3.98 -0.06 -29.42 16 14 N -0.73 -26.89 5.56 -478.53 -2.66 -29.55 16 15 C 0.16 7.24 5.61 86.38 0.48 7.73 16 16 C 0.03 1.31 5.09 29.85 0.15 1.46 16 17 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16 18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 19 C 0.01 0.45 5.46 84.65 0.46 0.91 16 20 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 21 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.49 7.92 -2.39 -0.02 1.47 16 36 H 0.41 7.88 8.38 -92.71 -0.78 7.10 16 37 H 0.41 12.51 8.49 -92.71 -0.79 11.73 16 38 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -71.97 347.16 0.20 -71.77 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -0.56 Total: 20.78 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 4.94 Total: 6.28 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -4.64 Total: -105.24 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.56 Total: -39.68 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.97 0.20 -71.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454770641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.015 kcal (2) G-P(sol) polarization free energy of solvation -71.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds