Wall clock time and date at job start Mon Mar 30 2020 01:10:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.42906 * 109.47321 * 2 1
4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1
5 5 H 1.09009 * 110.43442 * 31.08569 * 4 3 2
6 6 C 1.54891 * 110.48315 * 268.54954 * 4 3 2
7 7 C 1.54893 * 102.74452 * 203.37516 * 6 4 3
8 8 C 1.54269 * 104.19649 * 37.94204 * 7 6 4
9 9 C 1.53873 * 106.59586 * 336.38974 * 8 7 6
10 10 H 1.08997 * 110.03206 * 119.28876 * 9 8 7
11 11 N 1.46503 * 110.02991 * 240.71313 * 9 8 7
12 12 C 1.34777 * 119.99990 * 272.16943 * 11 9 8
13 13 O 1.21582 * 120.00339 * 359.97438 * 12 11 9
14 14 N 1.34775 * 119.99633 * 180.02562 * 12 11 9
15 15 C 1.46502 * 119.99949 * 179.97438 * 14 12 11
16 16 C 1.53000 * 109.47407 * 179.97438 * 15 14 12
17 17 C 1.50702 * 109.46939 * 179.97438 * 16 15 14
18 18 H 1.07992 * 120.00310 * 359.97438 * 17 16 15
19 19 C 1.37876 * 119.99594 * 179.97438 * 17 16 15
20 20 N 1.31516 * 120.00484 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 120.00001 * 180.02562 * 19 17 16
22 22 H 1.48493 * 109.47144 * 59.99579 * 21 19 17
23 23 H 1.48503 * 109.47477 * 180.02562 * 21 19 17
24 24 H 1.48502 * 109.46960 * 299.99877 * 21 19 17
25 25 H 1.09002 * 109.47153 * 299.99798 * 1 2 3
26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
27 27 H 1.09004 * 109.47261 * 59.99970 * 1 2 3
28 28 H 1.08996 * 109.47853 * 120.00174 * 2 1 3
29 29 H 1.09002 * 109.47153 * 240.00202 * 2 1 3
30 30 H 1.08994 * 110.75758 * 321.68644 * 6 4 3
31 31 H 1.08996 * 110.75780 * 85.06346 * 6 4 3
32 32 H 1.09000 * 110.48690 * 156.61934 * 7 6 4
33 33 H 1.09004 * 110.48994 * 279.13009 * 7 6 4
34 34 H 1.09001 * 110.03484 * 95.67209 * 8 7 6
35 35 H 1.08999 * 110.03214 * 217.10260 * 8 7 6
36 36 H 0.97003 * 120.00332 * 92.16968 * 11 9 8
37 37 H 0.97003 * 120.00688 * 359.97438 * 14 12 11
38 38 H 1.09004 * 109.47404 * 299.99905 * 15 14 12
39 39 H 1.09001 * 109.47526 * 59.99570 * 15 14 12
40 40 H 1.08997 * 109.47205 * 299.99798 * 16 15 14
41 41 H 1.08997 * 109.47182 * 60.00150 * 16 15 14
42 42 H 0.97000 * 120.00173 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4602 -0.0006
5 1 3.8792 0.6183 -0.5283
6 6 3.9689 1.5394 1.4497
7 6 5.3360 2.2447 1.2689
8 6 5.0778 3.2940 0.1679
9 6 3.8664 2.7951 -0.6392
10 1 3.0544 3.5198 -0.5802
11 7 4.2485 2.5816 -2.0373
12 6 4.1764 3.5988 -2.9185
13 8 3.7937 4.6935 -2.5534
14 7 4.5274 3.4021 -4.2048
15 6 4.4484 4.5076 -5.1629
16 6 4.9003 4.0211 -6.5414
17 6 4.8184 5.1582 -7.5270
18 1 4.4777 6.1304 -7.2028
19 6 5.1784 4.9573 -8.8427
20 7 5.5928 3.7733 -9.2376
21 14 5.0776 6.3669 -10.0643
22 1 5.9595 7.4743 -9.6161
23 1 5.5161 5.8947 -11.4023
24 1 3.6764 6.8520 -10.1458
25 1 -0.3633 0.5138 0.8900
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 -0.8900
28 1 1.8934 -0.5138 0.8899
29 1 1.8933 -0.5138 -0.8900
30 1 3.3059 2.1367 2.0756
31 1 4.1013 0.5415 1.8677
32 1 5.6398 2.7312 2.1958
33 1 6.0943 1.5305 0.9478
34 1 4.8536 4.2608 0.6187
35 1 5.9500 3.3772 -0.4805
36 1 4.5535 1.7081 -2.3288
37 1 4.8324 2.5286 -4.4963
38 1 3.4201 4.8643 -5.2222
39 1 5.0964 5.3202 -4.8344
40 1 5.9286 3.6648 -6.4818
41 1 4.2526 3.2085 -6.8702
42 1 5.8464 3.6320 -10.1632
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000454770641.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:12
Heat of formation + Delta-G solvation = -123.783847 kcal
Electronic energy + Delta-G solvation = -20681.553525 eV
Core-core repulsion = 17466.744785 eV
Total energy + Delta-G solvation = -3214.808740 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.29376 -39.82347 -37.48668 -36.49955 -34.92590 -34.48173 -32.09781 -31.46336
-28.80753 -28.20108 -26.44046 -23.72362 -23.08047 -22.31482 -21.84496 -21.07219
-19.50764 -18.46312 -17.97581 -17.54357 -16.63655 -16.50187 -16.47091 -16.10600
-15.65481 -15.17464 -14.98257 -14.64104 -14.37042 -14.26973 -13.93997 -13.59751
-13.21911 -13.00845 -12.93438 -12.80884 -12.53284 -12.39021 -12.22229 -12.09856
-12.00701 -11.72258 -11.58453 -11.51625 -11.49019 -11.21666 -10.61223 -10.58143
-10.25219 -9.71414 -8.23770 -6.34167 1.41984 1.44669 1.52342 1.71736
2.16123 2.41500 2.68454 3.10913 3.33227 3.51431 3.74416 3.94578
4.17361 4.20256 4.28790 4.44931 4.47842 4.49038 4.50539 4.51773
4.55928 4.65666 4.83927 4.86296 4.98393 5.02187 5.04253 5.16525
5.19096 5.26764 5.31339 5.36790 5.51281 5.58591 5.59410 5.78875
6.03245 6.17472 6.32662 6.78625 7.12681 7.35078 7.60273 8.87994
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.026854 B = 0.003142 C = 0.002951
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.423857 B = 8910.776385 C = 9487.139027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.051 3.949
3 O -0.403 6.403
4 C 0.083 3.917
5 H 0.091 0.909
6 C -0.135 4.135
7 C -0.112 4.112
8 C -0.132 4.132
9 C 0.158 3.842
10 H 0.065 0.935
11 N -0.726 5.726
12 C 0.698 3.302
13 O -0.639 6.639
14 N -0.733 5.733
15 C 0.161 3.839
16 C 0.025 3.975
17 C -0.549 4.549
18 H 0.058 0.942
19 C 0.008 3.992
20 N -0.926 5.926
21 Si 0.965 3.035
22 H -0.268 1.268
23 H -0.280 1.280
24 H -0.269 1.269
25 H 0.060 0.940
26 H 0.091 0.909
27 H 0.047 0.953
28 H 0.067 0.933
29 H 0.054 0.946
30 H 0.073 0.927
31 H 0.094 0.906
32 H 0.082 0.918
33 H 0.083 0.917
34 H 0.063 0.937
35 H 0.064 0.936
36 H 0.409 0.591
37 H 0.407 0.593
38 H 0.041 0.959
39 H 0.043 0.957
40 H 0.010 0.990
41 H 0.008 0.992
42 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.868 -12.022 22.301 25.497
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.025 4.025
3 O -0.323 6.323
4 C 0.024 3.976
5 H 0.109 0.891
6 C -0.173 4.173
7 C -0.149 4.149
8 C -0.171 4.171
9 C 0.052 3.948
10 H 0.083 0.917
11 N -0.382 5.382
12 C 0.398 3.602
13 O -0.521 6.521
14 N -0.388 5.388
15 C 0.036 3.964
16 C -0.012 4.012
17 C -0.587 4.587
18 H 0.077 0.923
19 C -0.191 4.191
20 N -0.566 5.566
21 Si 0.789 3.211
22 H -0.193 1.193
23 H -0.205 1.205
24 H -0.194 1.194
25 H 0.079 0.921
26 H 0.110 0.890
27 H 0.066 0.934
28 H 0.085 0.915
29 H 0.072 0.928
30 H 0.092 0.908
31 H 0.113 0.887
32 H 0.101 0.899
33 H 0.102 0.898
34 H 0.082 0.918
35 H 0.083 0.917
36 H 0.246 0.754
37 H 0.242 0.758
38 H 0.059 0.941
39 H 0.061 0.939
40 H 0.028 0.972
41 H 0.027 0.973
42 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -3.288 -10.965 22.463 25.212
hybrid contribution 0.298 -0.104 -1.308 1.346
sum -2.990 -11.069 21.155 24.062
Atomic orbital electron populations
1.21780 0.93587 1.03285 1.02317 1.22695 0.95937 0.82765 1.01102
1.87956 1.21041 1.28221 1.95125 1.23252 0.81240 0.96148 0.96939
0.89108 1.22904 0.96857 1.02454 0.95113 1.22267 0.97013 0.97309
0.98356 1.22496 0.96945 0.99738 0.97907 1.21476 0.96981 0.97446
0.78901 0.91690 1.45072 1.71830 1.12511 1.08798 1.16174 0.78300
0.84481 0.81238 1.90855 1.55864 1.26040 1.79358 1.45207 1.70871
1.15341 1.07338 1.21068 0.99343 0.87927 0.88038 1.19112 0.95814
0.96288 0.89993 1.21445 1.45045 0.97410 0.94813 0.92348 1.25865
0.94403 0.98506 1.00317 1.70049 1.45015 1.23688 1.17830 0.85499
0.78945 0.79061 0.77552 1.19321 1.20477 1.19393 0.92127 0.89013
0.93391 0.91466 0.92821 0.90803 0.88729 0.89892 0.89815 0.91847
0.91693 0.75431 0.75784 0.94104 0.93853 0.97191 0.97346 0.92507
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16
2 C 0.05 0.77 6.52 71.98 0.47 1.24 16
3 O -0.40 -8.76 10.05 -148.98 -1.50 -10.26 16
4 C 0.08 1.46 3.02 31.67 0.10 1.56 16
5 H 0.09 1.23 7.46 -2.38 -0.02 1.22 16
6 C -0.14 -1.78 6.62 31.89 0.21 -1.57 16
7 C -0.11 -1.48 6.83 31.67 0.22 -1.26 16
8 C -0.13 -2.77 6.59 31.32 0.21 -2.56 16
9 C 0.16 3.86 3.00 45.71 0.14 4.00 16
10 H 0.06 2.10 7.49 -2.39 -0.02 2.09 16
11 N -0.73 -19.05 4.99 -454.37 -2.27 -21.31 16
12 C 0.70 25.66 8.56 179.05 1.53 27.20 16
13 O -0.64 -29.35 16.00 -3.98 -0.06 -29.42 16
14 N -0.73 -26.89 5.56 -478.53 -2.66 -29.55 16
15 C 0.16 7.24 5.61 86.38 0.48 7.73 16
16 C 0.03 1.31 5.09 29.85 0.15 1.46 16
17 C -0.55 -31.20 9.11 25.60 0.23 -30.97 16
18 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16
19 C 0.01 0.45 5.46 84.65 0.46 0.91 16
20 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16
21 Si 0.97 44.06 29.54 68.60 2.03 46.08 16
22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
25 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16
28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
29 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16
30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
33 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16
34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.06 1.49 7.92 -2.39 -0.02 1.47 16
36 H 0.41 7.88 8.38 -92.71 -0.78 7.10 16
37 H 0.41 12.51 8.49 -92.71 -0.79 11.73 16
38 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16
39 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16
40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16
42 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16
Total: -1.00 -71.97 347.16 0.20 -71.77
By element:
Atomic # 1 Polarization: 21.34 SS G_CDS: -0.56 Total: 20.78 kcal
Atomic # 6 Polarization: 1.34 SS G_CDS: 4.94 Total: 6.28 kcal
Atomic # 7 Polarization: -100.59 SS G_CDS: -4.64 Total: -105.24 kcal
Atomic # 8 Polarization: -38.11 SS G_CDS: -1.56 Total: -39.68 kcal
Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal
Total: -71.97 0.20 -71.77 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000454770641.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.015 kcal
(2) G-P(sol) polarization free energy of solvation -71.972 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal
(6) G-S(sol) free energy of system = (1) + (5) -123.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds