Wall clock time and date at job start Mon Mar 30 2020 01:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47193 * 2 1 4 4 C 1.42899 * 114.00196 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47147 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.58922 * 48.70615 * 5 4 3 7 7 C 1.53191 * 109.58807 * 169.13953 * 5 4 3 8 8 C 1.53034 * 109.31479 * 174.42135 * 7 5 4 9 9 C 1.53038 * 109.53681 * 298.62966 * 8 7 5 10 10 C 1.53197 * 109.31182 * 61.36976 * 9 8 7 11 11 N 1.46927 * 109.58458 * 288.42560 * 5 4 3 12 12 C 1.34770 * 120.63305 * 6.62628 * 11 5 4 13 13 O 1.21588 * 120.00273 * 4.42103 * 12 11 5 14 14 N 1.34776 * 120.00300 * 184.41740 * 12 11 5 15 15 C 1.46498 * 120.00168 * 185.14050 * 14 12 11 16 16 C 1.50700 * 109.47351 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99719 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00443 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99717 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00217 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46948 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46794 * 120.00045 * 20 18 16 23 23 H 1.48499 * 109.46947 * 239.99793 * 20 18 16 24 24 H 1.08994 * 109.47466 * 300.00200 * 1 2 3 25 25 H 1.09002 * 109.47104 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46922 * 239.99278 * 2 1 3 28 28 H 1.08999 * 109.46605 * 119.99827 * 2 1 3 29 29 H 1.08995 * 109.46876 * 300.00151 * 4 3 2 30 30 H 1.08999 * 109.47140 * 59.99994 * 4 3 2 31 31 H 1.09006 * 109.49411 * 294.37266 * 7 5 4 32 32 H 1.09001 * 109.49871 * 54.46227 * 7 5 4 33 33 H 1.09001 * 109.45767 * 178.61170 * 8 7 5 34 34 H 1.08995 * 109.45977 * 58.65259 * 8 7 5 35 35 H 1.08998 * 109.50327 * 301.41605 * 9 8 7 36 36 H 1.09004 * 109.52392 * 181.33192 * 9 8 7 37 37 H 1.08994 * 109.58506 * 185.57745 * 10 9 8 38 38 H 1.08996 * 109.58692 * 65.14762 * 10 9 8 39 39 H 0.96995 * 119.99824 * 5.14476 * 14 12 11 40 40 H 1.09007 * 109.47253 * 300.00165 * 15 14 12 41 41 H 1.09004 * 109.47465 * 60.00055 * 15 14 12 42 42 H 0.97000 * 120.00091 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.2645 3.4659 0.7726 7 6 5.3272 3.0690 0.2737 8 6 5.7409 4.5359 0.1355 9 6 5.4660 5.0128 -1.2924 10 6 3.9657 4.9043 -1.5828 11 7 3.5301 3.5274 -1.3121 12 6 2.8719 2.8184 -2.2504 13 8 2.4458 1.7104 -1.9875 14 7 2.6858 3.3376 -3.4801 15 6 1.8745 2.6171 -4.4644 16 6 1.8246 3.4052 -5.7479 17 1 2.3448 4.3486 -5.8228 18 6 1.1140 2.9223 -6.8263 19 7 0.4793 1.7741 -6.7346 20 14 1.0528 3.8989 -8.4175 21 1 1.8438 5.1461 -8.2635 22 1 1.6234 3.0844 -9.5204 23 1 -0.3570 4.2420 -8.7338 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8332 0.9767 0.8908 30 1 3.8340 0.9764 -0.8891 31 1 5.5449 2.7232 1.2843 32 1 5.8813 2.4653 -0.4451 33 1 6.8044 4.6352 0.3531 34 1 5.1686 5.1423 0.8374 35 1 6.0188 4.3909 -1.9966 36 1 5.7826 6.0505 -1.3972 37 1 3.7774 5.1482 -2.6283 38 1 3.4183 5.5937 -0.9402 39 1 3.0891 4.1883 -3.7135 40 1 2.3181 1.6399 -4.6555 41 1 0.8637 2.4878 -4.0775 42 1 -0.0204 1.4341 -7.4933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458714055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:44 Heat of formation + Delta-G solvation = -65.438340 kcal Electronic energy + Delta-G solvation = -22169.749238 eV Core-core repulsion = 18957.470550 eV Total energy + Delta-G solvation = -3212.278689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11996 -37.17261 -36.95708 -34.16239 -32.78659 -32.32347 -31.53979 -30.27454 -27.24775 -26.07128 -24.19053 -22.88369 -22.21248 -21.50290 -20.61145 -19.12326 -17.60623 -16.16765 -16.12286 -15.76067 -15.32368 -14.92367 -14.58972 -14.52288 -13.99413 -13.82530 -13.56682 -13.15508 -12.88772 -12.65207 -12.52148 -12.09031 -11.88524 -11.75727 -11.67668 -11.20315 -10.99683 -10.91967 -10.86885 -10.76471 -10.66484 -10.64656 -10.34618 -10.20959 -9.27935 -8.96139 -8.62935 -8.59807 -8.03508 -7.55660 -6.10692 -4.16341 3.26500 3.28254 3.34251 3.37963 4.04433 4.23724 4.35719 4.64815 4.83495 4.92224 4.97388 5.22580 5.25514 5.31851 5.41983 5.47149 5.52239 5.63370 5.71327 5.75950 5.78197 5.84730 5.88250 5.91214 5.99165 6.01632 6.17952 6.23084 6.38482 6.47439 6.59134 6.95447 7.27884 7.61668 7.66814 7.70119 7.92441 7.97701 8.10969 8.84823 9.05817 9.44621 9.64069 10.99629 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.005837 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.304020 B = 4795.453207 C = 6309.288925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 O -0.357 6.357 4 C 0.083 3.917 5 C 0.169 3.831 6 H 0.069 0.931 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.136 4.136 10 C 0.114 3.886 11 N -0.634 5.634 12 C 0.691 3.309 13 O -0.563 6.563 14 N -0.735 5.735 15 C 0.270 3.730 16 C -0.539 4.539 17 H 0.061 0.939 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.902 3.098 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.025 0.975 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.382 0.618 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 3.788 14.668 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 O -0.276 6.276 4 C 0.006 3.994 5 C 0.065 3.935 6 H 0.087 0.913 7 C -0.168 4.168 8 C -0.152 4.152 9 C -0.175 4.175 10 C -0.010 4.010 11 N -0.375 5.375 12 C 0.392 3.608 13 O -0.440 6.440 14 N -0.390 5.390 15 C 0.149 3.851 16 C -0.577 4.577 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.524 5.524 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.216 0.784 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.422 2.966 14.704 17.203 hybrid contribution 0.284 0.737 -1.074 1.333 sum 8.706 3.703 13.629 16.591 Atomic orbital electron populations 1.21660 0.94706 1.01212 1.02697 1.22098 0.94822 0.84846 0.98441 1.87926 1.19706 1.25165 1.94764 1.22280 0.83753 0.94537 0.98859 1.20880 0.94125 0.93811 0.84724 0.91281 1.21914 0.95543 0.97359 1.01947 1.21454 1.00978 0.95855 0.96942 1.21948 0.96693 1.01538 0.97315 1.21527 0.94156 0.83765 1.01530 1.47264 1.62104 1.14084 1.14043 1.16093 0.79209 0.84698 0.80762 1.90907 1.54925 1.19316 1.78886 1.45913 1.55756 1.25541 1.11788 1.18887 0.89754 0.91997 0.84458 1.21282 1.32712 1.06620 0.97101 0.92120 1.24934 0.95058 0.95086 0.98943 1.69992 1.32116 1.18917 1.31341 0.86392 0.77854 0.79886 0.82942 1.19703 1.20868 1.20845 0.92960 0.91455 0.92077 0.93390 0.95702 0.95549 0.91492 0.90984 0.91327 0.91836 0.91840 0.91405 0.91020 0.90080 0.92014 0.78374 0.95996 0.96014 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 37.16 0.38 -1.89 16 2 C 0.07 1.27 6.15 37.16 0.23 1.50 16 3 O -0.36 -6.82 7.86 -60.65 -0.48 -7.29 16 4 C 0.08 1.35 4.52 37.16 0.17 1.51 16 5 C 0.17 2.42 3.16 -67.60 -0.21 2.21 16 6 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.13 -1.39 5.35 -26.61 -0.14 -1.53 16 8 C -0.11 -1.06 5.88 -26.69 -0.16 -1.22 16 9 C -0.14 -1.39 6.08 -26.61 -0.16 -1.56 16 10 C 0.11 1.47 6.43 -3.71 -0.02 1.44 16 11 N -0.63 -10.41 2.97 -170.91 -0.51 -10.91 16 12 C 0.69 14.69 8.05 -86.92 -0.70 13.99 16 13 O -0.56 -13.44 9.80 -20.13 -0.20 -13.63 16 14 N -0.73 -16.37 5.45 -66.41 -0.36 -16.73 16 15 C 0.27 7.37 5.43 -5.19 -0.03 7.34 16 16 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 30 H 0.07 1.26 6.47 -51.93 -0.34 0.92 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.07 5.57 -51.93 -0.29 0.78 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.38 7.50 5.81 -40.82 -0.24 7.27 16 40 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -32.34 330.01 -9.06 -41.41 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.14 Total: 3.58 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -1.06 Total: 8.21 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.13 Total: -53.38 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.67 Total: -20.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.34 -9.06 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.031 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds