Wall clock time and date at job start Mon Mar 30 2020 01:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47193 * 2 1 4 4 C 1.42899 * 114.00196 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47147 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.58922 * 48.70615 * 5 4 3 7 7 C 1.53191 * 109.58807 * 169.13953 * 5 4 3 8 8 C 1.53034 * 109.31479 * 174.42135 * 7 5 4 9 9 C 1.53038 * 109.53681 * 298.62966 * 8 7 5 10 10 C 1.53197 * 109.31182 * 61.36976 * 9 8 7 11 11 N 1.46927 * 109.58458 * 288.42560 * 5 4 3 12 12 C 1.34770 * 120.63305 * 6.62628 * 11 5 4 13 13 O 1.21588 * 120.00273 * 4.42103 * 12 11 5 14 14 N 1.34776 * 120.00300 * 184.41740 * 12 11 5 15 15 C 1.46498 * 120.00168 * 185.14050 * 14 12 11 16 16 C 1.50700 * 109.47351 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99719 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00443 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99717 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00217 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.46948 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46794 * 120.00045 * 20 18 16 23 23 H 1.48499 * 109.46947 * 239.99793 * 20 18 16 24 24 H 1.08994 * 109.47466 * 300.00200 * 1 2 3 25 25 H 1.09002 * 109.47104 * 60.00224 * 1 2 3 26 26 H 1.09003 * 109.47264 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46922 * 239.99278 * 2 1 3 28 28 H 1.08999 * 109.46605 * 119.99827 * 2 1 3 29 29 H 1.08995 * 109.46876 * 300.00151 * 4 3 2 30 30 H 1.08999 * 109.47140 * 59.99994 * 4 3 2 31 31 H 1.09006 * 109.49411 * 294.37266 * 7 5 4 32 32 H 1.09001 * 109.49871 * 54.46227 * 7 5 4 33 33 H 1.09001 * 109.45767 * 178.61170 * 8 7 5 34 34 H 1.08995 * 109.45977 * 58.65259 * 8 7 5 35 35 H 1.08998 * 109.50327 * 301.41605 * 9 8 7 36 36 H 1.09004 * 109.52392 * 181.33192 * 9 8 7 37 37 H 1.08994 * 109.58506 * 185.57745 * 10 9 8 38 38 H 1.08996 * 109.58692 * 65.14762 * 10 9 8 39 39 H 0.96995 * 119.99824 * 5.14476 * 14 12 11 40 40 H 1.09007 * 109.47253 * 300.00165 * 15 14 12 41 41 H 1.09004 * 109.47465 * 60.00055 * 15 14 12 42 42 H 0.97000 * 120.00091 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 1 3.2645 3.4659 0.7726 7 6 5.3272 3.0690 0.2737 8 6 5.7409 4.5359 0.1355 9 6 5.4660 5.0128 -1.2924 10 6 3.9657 4.9043 -1.5828 11 7 3.5301 3.5274 -1.3121 12 6 2.8719 2.8184 -2.2504 13 8 2.4458 1.7104 -1.9875 14 7 2.6858 3.3376 -3.4801 15 6 1.8745 2.6171 -4.4644 16 6 1.8246 3.4052 -5.7479 17 1 2.3448 4.3486 -5.8228 18 6 1.1140 2.9223 -6.8263 19 7 0.4793 1.7741 -6.7346 20 14 1.0528 3.8989 -8.4175 21 1 1.8438 5.1461 -8.2635 22 1 1.6234 3.0844 -9.5204 23 1 -0.3570 4.2420 -8.7338 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8332 0.9767 0.8908 30 1 3.8340 0.9764 -0.8891 31 1 5.5449 2.7232 1.2843 32 1 5.8813 2.4653 -0.4451 33 1 6.8044 4.6352 0.3531 34 1 5.1686 5.1423 0.8374 35 1 6.0188 4.3909 -1.9966 36 1 5.7826 6.0505 -1.3972 37 1 3.7774 5.1482 -2.6283 38 1 3.4183 5.5937 -0.9402 39 1 3.0891 4.1883 -3.7135 40 1 2.3181 1.6399 -4.6555 41 1 0.8637 2.4878 -4.0775 42 1 -0.0204 1.4341 -7.4933 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458714055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:43 Heat of formation + Delta-G solvation = -86.495445 kcal Electronic energy + Delta-G solvation = -22170.662343 eV Core-core repulsion = 18957.470550 eV Total energy + Delta-G solvation = -3213.191793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53751 -38.66411 -38.20977 -36.07569 -34.56732 -33.52636 -33.05019 -31.51664 -29.19210 -27.39247 -25.39383 -24.69509 -23.57129 -22.80989 -21.81862 -20.67581 -19.14388 -17.99803 -17.46585 -17.29184 -16.89047 -16.57368 -16.19143 -15.59425 -15.19264 -15.16226 -14.98066 -14.61925 -14.25765 -14.10108 -13.83443 -13.75678 -13.58119 -13.26428 -12.85764 -12.79003 -12.75130 -12.32144 -12.18422 -12.15833 -11.87256 -11.76008 -11.56382 -11.46011 -11.36702 -10.80773 -10.36847 -10.27813 -9.58424 -9.25503 -8.28001 -6.44269 1.42059 1.43952 1.57138 1.88572 2.38671 2.44352 2.94594 3.06756 3.28583 3.84827 3.92718 4.05717 4.18315 4.19191 4.29154 4.32031 4.41720 4.50898 4.54704 4.57394 4.69248 4.81303 4.94699 4.99297 5.01616 5.05800 5.11379 5.14447 5.19985 5.24638 5.25249 5.31527 5.49798 5.50897 5.73175 5.86067 5.91534 6.23614 6.59923 6.68600 7.25856 7.34217 7.92802 8.84603 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.005837 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.304020 B = 4795.453207 C = 6309.288925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 O -0.384 6.384 4 C 0.080 3.920 5 C 0.164 3.836 6 H 0.079 0.921 7 C -0.121 4.121 8 C -0.111 4.111 9 C -0.130 4.130 10 C 0.105 3.895 11 N -0.628 5.628 12 C 0.681 3.319 13 O -0.596 6.596 14 N -0.733 5.733 15 C 0.295 3.705 16 C -0.554 4.554 17 H 0.079 0.921 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.985 3.015 21 H -0.254 1.254 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.067 0.933 25 H 0.028 0.972 26 H 0.086 0.914 27 H 0.017 0.983 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.396 0.604 40 H -0.020 1.020 41 H -0.021 1.021 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.704 6.117 15.754 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.005 4.005 3 O -0.303 6.303 4 C 0.003 3.997 5 C 0.060 3.940 6 H 0.097 0.903 7 C -0.160 4.160 8 C -0.148 4.148 9 C -0.168 4.168 10 C -0.017 4.017 11 N -0.367 5.367 12 C 0.383 3.617 13 O -0.476 6.476 14 N -0.390 5.390 15 C 0.171 3.829 16 C -0.591 4.591 17 H 0.097 0.903 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.808 3.192 21 H -0.177 1.177 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.086 0.914 25 H 0.048 0.952 26 H 0.105 0.895 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.233 0.767 40 H -0.002 1.002 41 H -0.003 1.003 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.133 5.347 15.845 19.554 hybrid contribution -0.221 -0.040 -1.306 1.326 sum 9.912 5.307 14.539 18.379 Atomic orbital electron populations 1.21648 0.93985 1.02579 1.01492 1.22189 0.95529 0.84318 0.98459 1.87877 1.21376 1.26230 1.94828 1.22396 0.82481 0.96161 0.98622 1.21208 0.96898 0.92347 0.83514 0.90292 1.21905 0.92166 0.98810 1.03086 1.21475 1.02617 0.94422 0.96275 1.21925 0.93966 1.03074 0.97880 1.21838 0.96585 0.81730 1.01562 1.47318 1.60623 1.15154 1.13644 1.16354 0.79579 0.84703 0.81113 1.90904 1.56193 1.20942 1.79514 1.45561 1.55770 1.25907 1.11792 1.18244 0.87798 0.91004 0.85844 1.21625 1.33110 1.07255 0.97155 0.90283 1.26064 0.94161 0.96085 1.03239 1.70157 1.32937 1.21007 1.32848 0.85105 0.78164 0.78630 0.77257 1.17708 1.20346 1.20350 0.91369 0.95235 0.89495 0.96466 0.92376 0.92324 0.95005 0.88275 0.92593 0.89538 0.90477 0.92745 0.88253 0.90921 0.90210 0.76723 1.00173 1.00328 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 10.28 71.98 0.74 -3.76 16 2 C 0.07 2.51 6.15 71.98 0.44 2.95 16 3 O -0.38 -15.06 7.86 -124.68 -0.98 -16.04 16 4 C 0.08 2.62 4.52 71.98 0.33 2.95 16 5 C 0.16 4.48 3.16 44.97 0.14 4.63 16 6 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 7 C -0.12 -2.28 5.35 30.67 0.16 -2.12 16 8 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 9 C -0.13 -2.27 6.08 30.67 0.19 -2.08 16 10 C 0.11 2.52 6.43 86.36 0.56 3.08 16 11 N -0.63 -20.47 2.97 -812.90 -2.42 -22.89 16 12 C 0.68 30.27 8.05 179.06 1.44 31.71 16 13 O -0.60 -30.44 9.80 20.31 0.20 -30.24 16 14 N -0.73 -34.14 5.45 -482.29 -2.63 -36.77 16 15 C 0.29 17.10 5.43 85.63 0.47 17.57 16 16 C -0.55 -31.40 9.28 25.60 0.24 -31.16 16 17 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 20 Si 0.99 43.39 29.54 68.60 2.03 45.42 16 21 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 23 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.02 0.69 7.87 -2.39 -0.02 0.67 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 30 H 0.03 1.26 6.47 -2.39 -0.02 1.24 16 31 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.07 1.85 5.57 -2.39 -0.01 1.83 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.40 15.84 5.81 -92.71 -0.54 15.30 16 40 H -0.02 -1.28 8.14 -2.38 -0.02 -1.30 16 41 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.40 330.01 2.28 -73.12 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.45 Total: 21.69 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 5.34 Total: 23.03 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -4.76 Total: -116.99 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.78 Total: -46.28 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -75.40 2.28 -73.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.372 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds