Wall clock time and date at job start Mon Mar 30 2020 01:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47292 * 2 1 4 4 C 1.42901 * 114.00105 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47077 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.58802 * 308.82108 * 5 4 3 7 7 C 1.53187 * 109.58606 * 188.53656 * 5 4 3 8 8 C 1.53038 * 109.31124 * 185.57967 * 7 5 4 9 9 C 1.53043 * 109.54087 * 61.36332 * 8 7 5 10 10 C 1.53190 * 109.31275 * 298.63537 * 9 8 7 11 11 N 1.46925 * 108.77410 * 54.63297 * 10 9 8 12 12 C 1.34781 * 120.62983 * 126.37211 * 11 10 9 13 13 O 1.21589 * 119.99725 * 186.47100 * 12 11 10 14 14 N 1.34768 * 119.99841 * 6.46517 * 12 11 10 15 15 C 1.46504 * 120.00004 * 185.16297 * 14 12 11 16 16 C 1.50693 * 109.47415 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00127 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99636 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00395 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47283 * 89.99995 * 20 18 16 22 22 H 1.48503 * 109.47586 * 210.00241 * 20 18 16 23 23 H 1.48504 * 109.47128 * 330.00398 * 20 18 16 24 24 H 1.09000 * 109.47422 * 300.00100 * 1 2 3 25 25 H 1.09003 * 109.47051 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47422 * 239.99900 * 2 1 3 28 28 H 1.09003 * 109.47051 * 120.00016 * 2 1 3 29 29 H 1.09006 * 109.46703 * 60.00105 * 4 3 2 30 30 H 1.08994 * 109.47202 * 300.00111 * 4 3 2 31 31 H 1.08994 * 109.49939 * 65.62487 * 7 5 4 32 32 H 1.08999 * 109.52482 * 305.54175 * 7 5 4 33 33 H 1.08998 * 109.46252 * 301.34114 * 8 7 5 34 34 H 1.09007 * 109.45271 * 181.37506 * 8 7 5 35 35 H 1.09002 * 109.49903 * 178.68368 * 9 8 7 36 36 H 1.09004 * 109.52064 * 58.60381 * 9 8 7 37 37 H 1.08995 * 109.58663 * 174.41693 * 10 9 8 38 38 H 1.08994 * 109.58524 * 294.84842 * 10 9 8 39 39 H 0.96995 * 120.00416 * 5.16755 * 14 12 11 40 40 H 1.08999 * 109.47022 * 300.00589 * 15 14 12 41 41 H 1.09005 * 109.47023 * 59.99700 * 15 14 12 42 42 H 0.96999 * 119.99500 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.2980 3.4569 -0.8007 7 6 5.3369 3.0664 -0.2137 8 6 5.7451 4.5347 -0.0748 9 6 5.4132 5.0271 1.3358 10 6 3.9025 4.9213 1.5669 11 7 3.4778 3.5415 1.2938 12 6 2.7830 2.8422 2.2129 13 8 2.5392 1.6659 2.0251 14 7 2.3587 3.4467 3.3402 15 6 1.7031 2.6625 4.3897 16 6 1.3282 3.5687 5.5339 17 1 1.5559 4.6233 5.4846 18 6 0.6955 3.0513 6.6444 19 7 0.4196 1.7668 6.7051 20 14 0.2315 4.1745 8.0630 21 1 -1.1350 4.7121 7.8422 22 1 0.2617 3.4059 9.3333 23 1 1.1989 5.2984 8.1414 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8332 0.9767 0.8907 31 1 5.5949 2.7098 -1.2109 32 1 5.8620 2.4706 0.5329 33 1 5.2015 5.1335 -0.8056 34 1 6.8165 4.6319 -0.2505 35 1 5.7255 6.0660 1.4414 36 1 5.9372 4.4133 2.0685 37 1 3.6724 5.1764 2.6013 38 1 3.3815 5.6036 0.8954 39 1 2.4872 4.4010 3.4567 40 1 0.8043 2.1958 3.9867 41 1 2.3850 1.8901 4.7457 42 1 -0.0252 1.4028 7.4865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458714056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:46 Heat of formation + Delta-G solvation = -66.665725 kcal Electronic energy + Delta-G solvation = -22185.609323 eV Core-core repulsion = 18973.277411 eV Total energy + Delta-G solvation = -3212.331912 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12039 -37.16832 -36.96897 -34.16693 -32.79269 -32.32085 -31.53554 -30.28476 -27.25511 -26.06010 -24.17768 -22.87009 -22.22302 -21.50741 -20.64408 -19.11864 -17.58664 -16.16009 -16.13104 -15.73513 -15.31361 -14.87549 -14.61835 -14.58128 -13.98352 -13.79925 -13.61170 -13.16557 -12.91432 -12.64495 -12.50019 -12.09894 -11.89291 -11.74405 -11.67078 -11.20730 -10.99054 -10.91781 -10.88973 -10.77305 -10.66868 -10.63977 -10.36241 -10.20474 -9.29557 -8.98896 -8.64645 -8.52517 -8.04496 -7.56433 -6.10378 -4.16043 3.27597 3.28306 3.34141 3.37399 4.01879 4.26673 4.35927 4.66313 4.83166 4.94039 4.98770 5.23095 5.25759 5.32744 5.42230 5.47061 5.52122 5.63829 5.72548 5.75801 5.77921 5.84986 5.88489 5.90967 6.00836 6.01839 6.18025 6.25619 6.41186 6.48322 6.57821 6.96080 7.27957 7.61526 7.66806 7.70577 7.90300 7.97896 8.11249 8.84826 9.05774 9.44726 9.63857 10.99908 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.005833 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.669860 B = 4799.076713 C = 6249.654778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 O -0.364 6.364 4 C 0.078 3.922 5 C 0.170 3.830 6 H 0.068 0.932 7 C -0.129 4.129 8 C -0.115 4.115 9 C -0.135 4.135 10 C 0.113 3.887 11 N -0.635 5.635 12 C 0.697 3.303 13 O -0.569 6.569 14 N -0.734 5.734 15 C 0.271 3.729 16 C -0.539 4.539 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.902 3.098 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.382 0.618 40 H 0.024 0.976 41 H 0.020 0.980 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 3.886 -14.548 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 O -0.283 6.283 4 C 0.002 3.998 5 C 0.065 3.935 6 H 0.086 0.914 7 C -0.167 4.167 8 C -0.152 4.152 9 C -0.174 4.174 10 C -0.011 4.011 11 N -0.375 5.375 12 C 0.399 3.601 13 O -0.447 6.447 14 N -0.388 5.388 15 C 0.149 3.851 16 C -0.578 4.578 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.524 5.524 20 Si 0.729 3.271 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.216 0.784 40 H 0.042 0.958 41 H 0.038 0.962 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.528 2.987 -14.497 17.082 hybrid contribution -0.054 0.870 0.905 1.256 sum 8.473 3.857 -13.592 16.475 Atomic orbital electron populations 1.21669 0.94703 1.01280 1.02689 1.22111 0.94770 0.84698 0.98611 1.87872 1.20037 1.25432 1.94921 1.22408 0.83570 0.94639 0.99226 1.20894 0.93865 0.93622 0.85101 0.91424 1.21902 0.95418 0.97322 1.02085 1.21460 1.00880 0.95828 0.97070 1.21927 0.96482 1.01465 0.97487 1.21529 0.94328 0.83637 1.01558 1.47231 1.59660 1.14123 1.16505 1.16022 0.78881 0.85178 0.80061 1.90831 1.62369 1.14533 1.76940 1.45893 1.62879 1.11646 1.18420 1.18884 0.92246 0.90925 0.83027 1.21244 1.39796 0.94797 1.01919 0.92165 1.24931 0.95467 0.95180 0.98425 1.69986 1.40869 1.11742 1.29792 0.86444 0.78879 0.80356 0.81374 1.20513 1.21068 1.19825 0.91483 0.92948 0.92006 0.95587 0.93224 0.95783 0.90495 0.91025 0.91265 0.91869 0.91841 0.91037 0.91398 0.90021 0.92120 0.78370 0.95810 0.96190 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 10.28 37.15 0.38 -1.91 16 2 C 0.07 1.27 6.20 37.15 0.23 1.50 16 3 O -0.36 -6.94 7.97 -60.42 -0.48 -7.42 16 4 C 0.08 1.28 4.51 37.16 0.17 1.45 16 5 C 0.17 2.44 3.17 -67.60 -0.21 2.22 16 6 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 7 C -0.13 -1.41 5.36 -26.62 -0.14 -1.55 16 8 C -0.11 -1.07 5.88 -26.69 -0.16 -1.23 16 9 C -0.14 -1.41 6.08 -26.61 -0.16 -1.57 16 10 C 0.11 1.46 6.33 -3.71 -0.02 1.43 16 11 N -0.63 -10.43 2.97 -170.92 -0.51 -10.94 16 12 C 0.70 14.83 8.01 -86.92 -0.70 14.13 16 13 O -0.57 -13.55 9.86 -19.90 -0.20 -13.75 16 14 N -0.73 -16.39 5.40 -66.41 -0.36 -16.75 16 15 C 0.27 7.38 5.43 -5.19 -0.03 7.35 16 16 C -0.54 -14.96 9.28 -34.44 -0.32 -15.27 16 17 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 20 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.93 7.83 -51.93 -0.41 0.52 16 29 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.08 1.45 6.30 -51.93 -0.33 1.13 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.08 5.78 -51.93 -0.30 0.78 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.38 7.55 5.95 -40.82 -0.24 7.30 16 40 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -32.26 330.21 -9.06 -41.32 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.15 Total: 3.89 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.06 Total: 8.25 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.13 Total: -53.41 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.68 Total: -21.17 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.26 -9.06 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.344 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds