Wall clock time and date at job start Mon Mar 30 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.47292 * 2 1 4 4 C 1.42901 * 114.00105 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47077 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.58802 * 308.82108 * 5 4 3 7 7 C 1.53187 * 109.58606 * 188.53656 * 5 4 3 8 8 C 1.53038 * 109.31124 * 185.57967 * 7 5 4 9 9 C 1.53043 * 109.54087 * 61.36332 * 8 7 5 10 10 C 1.53190 * 109.31275 * 298.63537 * 9 8 7 11 11 N 1.46925 * 108.77410 * 54.63297 * 10 9 8 12 12 C 1.34781 * 120.62983 * 126.37211 * 11 10 9 13 13 O 1.21589 * 119.99725 * 186.47100 * 12 11 10 14 14 N 1.34768 * 119.99841 * 6.46517 * 12 11 10 15 15 C 1.46504 * 120.00004 * 185.16297 * 14 12 11 16 16 C 1.50693 * 109.47415 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00127 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00339 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99636 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00395 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47283 * 89.99995 * 20 18 16 22 22 H 1.48503 * 109.47586 * 210.00241 * 20 18 16 23 23 H 1.48504 * 109.47128 * 330.00398 * 20 18 16 24 24 H 1.09000 * 109.47422 * 300.00100 * 1 2 3 25 25 H 1.09003 * 109.47051 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47422 * 239.99900 * 2 1 3 28 28 H 1.09003 * 109.47051 * 120.00016 * 2 1 3 29 29 H 1.09006 * 109.46703 * 60.00105 * 4 3 2 30 30 H 1.08994 * 109.47202 * 300.00111 * 4 3 2 31 31 H 1.08994 * 109.49939 * 65.62487 * 7 5 4 32 32 H 1.08999 * 109.52482 * 305.54175 * 7 5 4 33 33 H 1.08998 * 109.46252 * 301.34114 * 8 7 5 34 34 H 1.09007 * 109.45271 * 181.37506 * 8 7 5 35 35 H 1.09002 * 109.49903 * 178.68368 * 9 8 7 36 36 H 1.09004 * 109.52064 * 58.60381 * 9 8 7 37 37 H 1.08995 * 109.58663 * 174.41693 * 10 9 8 38 38 H 1.08994 * 109.58524 * 294.84842 * 10 9 8 39 39 H 0.96995 * 120.00416 * 5.16755 * 14 12 11 40 40 H 1.08999 * 109.47022 * 300.00589 * 15 14 12 41 41 H 1.09005 * 109.47023 * 59.99700 * 15 14 12 42 42 H 0.96999 * 119.99500 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.2980 3.4569 -0.8007 7 6 5.3369 3.0664 -0.2137 8 6 5.7451 4.5347 -0.0748 9 6 5.4132 5.0271 1.3358 10 6 3.9025 4.9213 1.5669 11 7 3.4778 3.5415 1.2938 12 6 2.7830 2.8422 2.2129 13 8 2.5392 1.6659 2.0251 14 7 2.3587 3.4467 3.3402 15 6 1.7031 2.6625 4.3897 16 6 1.3282 3.5687 5.5339 17 1 1.5559 4.6233 5.4846 18 6 0.6955 3.0513 6.6444 19 7 0.4196 1.7668 6.7051 20 14 0.2315 4.1745 8.0630 21 1 -1.1350 4.7121 7.8422 22 1 0.2617 3.4059 9.3333 23 1 1.1989 5.2984 8.1414 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8339 0.9764 -0.8892 30 1 3.8332 0.9767 0.8907 31 1 5.5949 2.7098 -1.2109 32 1 5.8620 2.4706 0.5329 33 1 5.2015 5.1335 -0.8056 34 1 6.8165 4.6319 -0.2505 35 1 5.7255 6.0660 1.4414 36 1 5.9372 4.4133 2.0685 37 1 3.6724 5.1764 2.6013 38 1 3.3815 5.6036 0.8954 39 1 2.4872 4.4010 3.4567 40 1 0.8043 2.1958 3.9867 41 1 2.3850 1.8901 4.7457 42 1 -0.0252 1.4028 7.4865 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458714056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:45 Heat of formation + Delta-G solvation = -87.655338 kcal Electronic energy + Delta-G solvation = -22186.519500 eV Core-core repulsion = 18973.277411 eV Total energy + Delta-G solvation = -3213.242090 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.54040 -38.66315 -38.22266 -36.07898 -34.57473 -33.53103 -33.04787 -31.52851 -29.19314 -27.39401 -25.37923 -24.68813 -23.58294 -22.81985 -21.86177 -20.66574 -19.13749 -17.98138 -17.47340 -17.28345 -16.89024 -16.49520 -16.24568 -15.60413 -15.25308 -15.21078 -14.95940 -14.60576 -14.26533 -14.09275 -13.87205 -13.76545 -13.53153 -13.28737 -12.87212 -12.80276 -12.71585 -12.35735 -12.18446 -12.17207 -11.87486 -11.77285 -11.56988 -11.47433 -11.38171 -10.79212 -10.43931 -10.17702 -9.60199 -9.25876 -8.27682 -6.43944 1.42101 1.45283 1.56119 1.88695 2.38888 2.43704 2.95321 3.07027 3.28939 3.85102 3.92611 4.05768 4.17502 4.19283 4.29527 4.32334 4.41270 4.50283 4.54950 4.58395 4.69908 4.81106 4.95533 4.99256 5.02164 5.05574 5.10890 5.14324 5.20170 5.23766 5.24951 5.31931 5.49944 5.50907 5.73704 5.86370 5.91920 6.23927 6.57206 6.68618 7.26060 7.34073 7.92503 8.84681 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.005833 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.669860 B = 4799.076713 C = 6249.654778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 O -0.390 6.390 4 C 0.076 3.924 5 C 0.164 3.836 6 H 0.081 0.919 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.130 4.130 10 C 0.104 3.896 11 N -0.628 5.628 12 C 0.687 3.313 13 O -0.602 6.602 14 N -0.733 5.733 15 C 0.295 3.705 16 C -0.554 4.554 17 H 0.079 0.921 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.985 3.015 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.255 1.255 24 H 0.028 0.972 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.018 0.982 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.396 0.604 40 H -0.021 1.021 41 H -0.019 1.019 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.114 6.420 -15.851 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.005 4.005 3 O -0.309 6.309 4 C -0.001 4.001 5 C 0.061 3.939 6 H 0.098 0.902 7 C -0.160 4.160 8 C -0.148 4.148 9 C -0.168 4.168 10 C -0.018 4.018 11 N -0.368 5.368 12 C 0.389 3.611 13 O -0.481 6.481 14 N -0.389 5.389 15 C 0.171 3.829 16 C -0.592 4.592 17 H 0.097 0.903 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.808 3.192 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.179 1.179 24 H 0.047 0.953 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.233 0.767 40 H -0.003 1.003 41 H -0.002 1.002 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.742 5.574 -15.857 19.427 hybrid contribution -0.384 0.021 1.212 1.272 sum 9.358 5.595 -14.645 18.258 Atomic orbital electron populations 1.21655 0.93965 1.02647 1.01484 1.22202 0.95482 0.84181 0.98614 1.87826 1.21653 1.26474 1.94985 1.22496 0.82325 0.96289 0.98947 1.21217 0.96534 0.92159 0.84008 0.90152 1.21896 0.92165 0.98788 1.03143 1.21477 1.02483 0.94370 0.96423 1.21910 0.93922 1.02970 0.97999 1.21846 0.96631 0.81657 1.01662 1.47287 1.58078 1.15310 1.16096 1.16289 0.79246 0.85143 0.80449 1.90835 1.63478 1.16140 1.77697 1.45548 1.63234 1.11963 1.18172 1.18241 0.89721 0.90660 0.84250 1.21594 1.40011 0.95576 1.02055 0.90304 1.26058 0.94952 0.96813 1.01684 1.70153 1.41622 1.14200 1.30945 0.85157 0.78973 0.78229 0.76841 1.19644 1.20782 1.17921 0.95266 0.91342 0.89434 0.92286 0.96317 0.92618 0.94059 0.88285 0.92775 0.90318 0.89617 0.88235 0.93075 0.90931 0.89951 0.76747 1.00300 1.00151 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 10.28 71.98 0.74 -3.77 16 2 C 0.07 2.51 6.20 71.98 0.45 2.96 16 3 O -0.39 -15.25 7.97 -124.90 -1.00 -16.25 16 4 C 0.08 2.50 4.51 71.98 0.32 2.82 16 5 C 0.16 4.50 3.17 44.97 0.14 4.64 16 6 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 7 C -0.12 -2.33 5.36 30.67 0.16 -2.17 16 8 C -0.11 -1.62 5.88 30.62 0.18 -1.44 16 9 C -0.13 -2.32 6.08 30.67 0.19 -2.14 16 10 C 0.10 2.50 6.33 86.36 0.55 3.04 16 11 N -0.63 -20.49 2.97 -812.92 -2.42 -22.91 16 12 C 0.69 30.55 8.01 179.06 1.43 31.99 16 13 O -0.60 -30.67 9.86 20.09 0.20 -30.47 16 14 N -0.73 -34.20 5.40 -482.30 -2.60 -36.80 16 15 C 0.29 17.11 5.43 85.63 0.47 17.58 16 16 C -0.55 -31.47 9.28 25.60 0.24 -31.23 16 17 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 18 C 0.00 0.25 5.46 84.65 0.46 0.71 16 19 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 20 Si 0.99 43.40 29.54 68.60 2.03 45.43 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 26 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.02 0.75 7.83 -2.39 -0.02 0.73 16 29 H 0.06 1.46 8.13 -2.38 -0.02 1.44 16 30 H 0.04 1.65 6.30 -2.39 -0.02 1.63 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.07 1.85 5.78 -2.39 -0.01 1.84 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.40 15.91 5.95 -92.71 -0.55 15.36 16 40 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 41 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 42 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -75.22 330.21 2.26 -72.96 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.44 Total: 22.35 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 5.33 Total: 22.99 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -4.74 Total: -117.01 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -0.80 Total: -46.72 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -75.22 2.26 -72.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458714056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.693 kcal (2) G-P(sol) polarization free energy of solvation -75.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds