Wall clock time and date at job start Mon Mar 30 2020 01:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47591 * 2 1 4 4 C 1.34626 * 117.00310 * 179.97438 * 3 2 1 5 5 O 1.21514 * 120.00400 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00426 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99560 * 359.97438 * 6 4 3 8 8 C 1.46491 * 120.00162 * 179.97438 * 6 4 3 9 9 C 1.53120 * 109.52547 * 299.99483 * 8 6 4 10 10 C 1.53041 * 109.28182 * 177.62055 * 9 8 6 11 11 N 1.46849 * 109.52442 * 300.82868 * 10 9 8 12 12 C 1.46901 * 110.99649 * 185.83742 * 11 10 9 13 13 C 1.50701 * 109.46921 * 169.99608 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.46839 * 111.20047 * 61.73811 * 11 10 9 22 22 C 1.53034 * 109.52552 * 298.25821 * 21 11 10 23 23 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47099 * 300.00460 * 1 2 3 25 25 H 1.09008 * 109.46202 * 60.00131 * 1 2 3 26 26 H 1.08997 * 109.47360 * 239.99121 * 2 1 3 27 27 H 1.09009 * 109.46648 * 120.00161 * 2 1 3 28 28 H 1.08991 * 109.47430 * 270.00324 * 7 6 4 29 29 H 1.09002 * 109.46933 * 30.00320 * 7 6 4 30 30 H 1.09001 * 109.46864 * 149.99854 * 7 6 4 31 31 H 1.09005 * 109.52246 * 179.86978 * 8 6 4 32 32 H 1.09005 * 109.50142 * 57.68838 * 9 8 6 33 33 H 1.08998 * 109.50777 * 297.56735 * 9 8 6 34 34 H 1.08991 * 109.46218 * 180.80508 * 10 9 8 35 35 H 1.09005 * 109.44695 * 60.83538 * 10 9 8 36 36 H 1.09002 * 109.47401 * 49.99636 * 12 11 10 37 37 H 1.09001 * 109.46874 * 289.99649 * 12 11 10 38 38 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.46266 * 58.27078 * 21 11 10 40 40 H 1.09002 * 109.46276 * 178.24270 * 21 11 10 41 41 H 1.09006 * 109.50444 * 299.24199 * 22 21 11 42 42 H 1.09003 * 109.50687 * 179.12283 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5452 0.0005 5 8 4.0890 0.5816 0.0015 6 7 3.8641 2.7907 0.0011 7 6 2.9717 3.9525 0.0005 8 6 5.3164 2.9825 0.0022 9 6 5.9172 2.3341 1.2525 10 6 7.4397 2.4859 1.2184 11 7 7.9700 1.8436 0.0090 12 6 9.4390 1.8485 0.0114 13 6 9.9461 0.9750 -1.1070 14 1 9.2470 0.4673 -1.7551 15 6 11.3025 0.8247 -1.3036 16 7 11.7449 0.0628 -2.2800 17 14 12.5116 1.7033 -0.1831 18 1 12.8348 0.8329 0.9759 19 1 13.7549 2.0057 -0.9367 20 1 11.9065 2.9695 0.3023 21 6 7.4436 2.4805 -1.2048 22 6 5.9213 2.3285 -1.2432 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.7511 4.2407 -1.0272 29 1 2.0442 3.6984 0.5137 30 1 3.4558 4.7827 0.5149 31 1 5.5430 4.0487 0.0002 32 1 5.6576 1.2756 1.2740 33 1 5.5224 2.8244 2.1423 34 1 7.8717 2.0127 2.1002 35 1 7.6988 3.5447 1.2107 36 1 9.8021 1.4651 0.9650 37 1 9.7992 2.8673 -0.1314 38 1 12.6992 -0.0433 -2.4180 39 1 7.7029 3.5393 -1.2010 40 1 7.8785 2.0034 -2.0831 41 1 5.6616 1.2700 -1.2608 42 1 5.5294 2.8150 -2.1364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491076557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:56 Heat of formation + Delta-G solvation = -71.701314 kcal Electronic energy + Delta-G solvation = -21696.113283 eV Core-core repulsion = 18483.563012 eV Total energy + Delta-G solvation = -3212.550271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.67895 -38.56550 -36.62898 -35.44975 -33.02714 -31.93278 -31.19607 -30.36522 -27.61360 -26.53522 -24.32193 -22.93085 -22.62299 -21.25655 -20.34408 -19.56214 -17.61469 -16.88468 -16.69110 -16.54254 -15.41081 -14.83183 -14.78099 -14.30654 -14.07184 -13.68051 -13.59617 -13.28987 -12.94468 -12.90007 -12.80886 -12.56980 -12.14508 -12.06674 -11.90168 -11.74428 -11.72301 -11.16970 -10.78961 -10.71136 -10.54660 -10.41668 -10.27512 -10.02863 -9.82006 -9.75858 -9.20317 -8.65630 -8.51646 -7.25809 -5.99944 -3.96778 2.13456 2.91001 3.31872 3.38856 3.40842 3.80112 4.46261 4.77964 4.78218 4.82301 4.94360 5.05198 5.10736 5.14445 5.31423 5.33243 5.37389 5.42523 5.56523 5.58659 5.68465 5.72682 5.80692 5.85137 6.00693 6.12567 6.17685 6.22897 6.37426 6.46064 6.69748 6.74051 6.85068 6.94756 7.06734 7.40993 7.66372 7.99610 8.15163 8.38557 8.72901 9.09996 9.61913 11.13282 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.004032 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.303996 B = 6943.447465 C = 7308.592300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.081 3.919 3 O -0.376 6.376 4 C 0.644 3.356 5 O -0.550 6.550 6 N -0.597 5.597 7 C 0.085 3.915 8 C 0.167 3.833 9 C -0.132 4.132 10 C 0.060 3.940 11 N -0.525 5.525 12 C 0.162 3.838 13 C -0.507 4.507 14 H 0.081 0.919 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.071 3.929 22 C -0.135 4.135 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.020 0.980 36 H 0.024 0.976 37 H -0.013 1.013 38 H 0.263 0.737 39 H 0.018 0.982 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.581 7.596 5.960 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.006 3.994 3 O -0.291 6.291 4 C 0.398 3.602 5 O -0.438 6.438 6 N -0.337 5.337 7 C -0.058 4.058 8 C 0.066 3.934 9 C -0.171 4.171 10 C -0.070 4.070 11 N -0.250 5.250 12 C 0.036 3.964 13 C -0.546 4.546 14 H 0.099 0.901 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.703 3.297 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.193 1.193 21 C -0.057 4.057 22 C -0.173 4.173 23 H 0.099 0.901 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.038 0.962 36 H 0.042 0.958 37 H 0.005 0.995 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.397 6.696 5.875 23.178 hybrid contribution 1.039 1.265 0.552 1.727 sum -20.359 7.961 6.427 22.785 Atomic orbital electron populations 1.21814 0.92837 1.02929 1.03254 1.22904 0.94495 0.79062 1.02934 1.86204 1.22729 1.32922 1.87243 1.18103 0.80912 0.84314 0.76882 1.91035 1.59046 1.39313 1.54380 1.46892 1.07159 1.03137 1.76546 1.21750 0.94194 0.87941 1.01905 1.21245 0.75253 0.99690 0.97189 1.22056 0.95495 1.03946 0.95585 1.21973 0.93707 0.96164 0.95129 1.61819 1.10016 1.53121 1.00008 1.20158 0.82822 0.95396 0.98006 1.21067 0.92311 1.27732 1.13450 0.90056 1.24906 0.98163 0.95095 0.95240 1.69901 1.14193 1.38883 1.31060 0.86863 0.81002 0.80684 0.81197 1.20177 1.21286 1.19317 1.21891 0.92436 0.95914 0.95507 1.22117 0.96088 1.03831 0.95296 0.90126 0.91679 0.91619 0.91121 0.91221 0.92692 0.90724 0.91049 0.89502 0.88662 0.92534 0.91071 0.96230 0.95792 0.99494 0.92737 0.96428 0.88941 0.88677 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 37.16 0.38 -0.65 16 2 C 0.08 0.83 6.19 37.16 0.23 1.06 16 3 O -0.38 -4.72 9.04 -40.29 -0.36 -5.08 16 4 C 0.64 9.68 7.81 54.06 0.42 10.10 16 5 O -0.55 -10.19 12.30 -19.28 -0.24 -10.43 16 6 N -0.60 -7.80 2.83 -179.59 -0.51 -8.31 16 7 C 0.09 0.76 10.41 59.85 0.62 1.38 16 8 C 0.17 2.43 2.61 -67.81 -0.18 2.25 16 9 C -0.13 -2.09 5.33 -26.65 -0.14 -2.23 16 10 C 0.06 1.07 5.46 -3.83 -0.02 1.05 16 11 N -0.53 -11.55 4.65 -236.11 -1.10 -12.65 16 12 C 0.16 4.06 3.79 -4.97 -0.02 4.05 16 13 C -0.51 -14.80 8.98 -34.44 -0.31 -15.11 16 14 H 0.08 2.59 7.36 -52.49 -0.39 2.21 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 17 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 21 C 0.07 1.42 5.29 -3.84 -0.02 1.40 16 22 C -0.13 -2.30 5.33 -26.65 -0.14 -2.44 16 23 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.61 7.37 -51.93 -0.38 0.23 16 30 H 0.07 0.51 7.92 -51.93 -0.41 0.10 16 31 H 0.09 1.09 7.80 -51.93 -0.40 0.68 16 32 H 0.09 1.78 6.11 -51.93 -0.32 1.46 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.25 8.01 -51.93 -0.42 0.84 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.02 0.60 7.42 -51.93 -0.39 0.22 16 37 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 2.08 6.70 -51.93 -0.35 1.74 16 41 H 0.09 1.91 6.10 -51.93 -0.32 1.59 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 329.69 15.07 4.97 4.97 Total: -1.00 -33.53 329.69 -7.54 -41.07 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.14 Total: -2.17 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 0.73 Total: 2.74 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.83 Total: -48.29 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.60 Total: -15.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.53 -7.54 -41.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491076557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.631 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds