Wall clock time and date at job start Mon Mar 30 2020 01:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45193 * 109.47591 * 2 1 4 4 C 1.34626 * 117.00310 * 179.97438 * 3 2 1 5 5 O 1.21514 * 120.00400 * 359.97438 * 4 3 2 6 6 N 1.34784 * 120.00426 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99560 * 359.97438 * 6 4 3 8 8 C 1.46491 * 120.00162 * 179.97438 * 6 4 3 9 9 C 1.53120 * 109.52547 * 299.99483 * 8 6 4 10 10 C 1.53041 * 109.28182 * 177.62055 * 9 8 6 11 11 N 1.46849 * 109.52442 * 300.82868 * 10 9 8 12 12 C 1.46901 * 110.99649 * 185.83742 * 11 10 9 13 13 C 1.50701 * 109.46921 * 169.99608 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99594 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99875 * 0.02562 * 15 13 12 18 18 H 1.48504 * 109.47061 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.46906 * 209.99430 * 17 15 13 20 20 H 1.48498 * 109.47403 * 329.99876 * 17 15 13 21 21 C 1.46839 * 111.20047 * 61.73811 * 11 10 9 22 22 C 1.53034 * 109.52552 * 298.25821 * 21 11 10 23 23 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47099 * 300.00460 * 1 2 3 25 25 H 1.09008 * 109.46202 * 60.00131 * 1 2 3 26 26 H 1.08997 * 109.47360 * 239.99121 * 2 1 3 27 27 H 1.09009 * 109.46648 * 120.00161 * 2 1 3 28 28 H 1.08991 * 109.47430 * 270.00324 * 7 6 4 29 29 H 1.09002 * 109.46933 * 30.00320 * 7 6 4 30 30 H 1.09001 * 109.46864 * 149.99854 * 7 6 4 31 31 H 1.09005 * 109.52246 * 179.86978 * 8 6 4 32 32 H 1.09005 * 109.50142 * 57.68838 * 9 8 6 33 33 H 1.08998 * 109.50777 * 297.56735 * 9 8 6 34 34 H 1.08991 * 109.46218 * 180.80508 * 10 9 8 35 35 H 1.09005 * 109.44695 * 60.83538 * 10 9 8 36 36 H 1.09002 * 109.47401 * 49.99636 * 12 11 10 37 37 H 1.09001 * 109.46874 * 289.99649 * 12 11 10 38 38 H 0.97002 * 119.99739 * 180.02562 * 16 15 13 39 39 H 1.09006 * 109.46266 * 58.27078 * 21 11 10 40 40 H 1.09002 * 109.46276 * 178.24270 * 21 11 10 41 41 H 1.09006 * 109.50444 * 299.24199 * 22 21 11 42 42 H 1.09003 * 109.50687 * 179.12283 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5452 0.0005 5 8 4.0890 0.5816 0.0015 6 7 3.8641 2.7907 0.0011 7 6 2.9717 3.9525 0.0005 8 6 5.3164 2.9825 0.0022 9 6 5.9172 2.3341 1.2525 10 6 7.4397 2.4859 1.2184 11 7 7.9700 1.8436 0.0090 12 6 9.4390 1.8485 0.0114 13 6 9.9461 0.9750 -1.1070 14 1 9.2470 0.4673 -1.7551 15 6 11.3025 0.8247 -1.3036 16 7 11.7449 0.0628 -2.2800 17 14 12.5116 1.7033 -0.1831 18 1 12.8348 0.8329 0.9759 19 1 13.7549 2.0057 -0.9367 20 1 11.9065 2.9695 0.3023 21 6 7.4436 2.4805 -1.2048 22 6 5.9213 2.3285 -1.2432 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 2.7511 4.2407 -1.0272 29 1 2.0442 3.6984 0.5137 30 1 3.4558 4.7827 0.5149 31 1 5.5430 4.0487 0.0002 32 1 5.6576 1.2756 1.2740 33 1 5.5224 2.8244 2.1423 34 1 7.8717 2.0127 2.1002 35 1 7.6988 3.5447 1.2107 36 1 9.8021 1.4651 0.9650 37 1 9.7992 2.8673 -0.1314 38 1 12.6992 -0.0433 -2.4180 39 1 7.7029 3.5393 -1.2010 40 1 7.8785 2.0034 -2.0831 41 1 5.6616 1.2700 -1.2608 42 1 5.5294 2.8150 -2.1364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491076557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:56 Heat of formation + Delta-G solvation = -95.727713 kcal Electronic energy + Delta-G solvation = -21697.155146 eV Core-core repulsion = 18483.563012 eV Total energy + Delta-G solvation = -3213.592134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.80067 -39.88843 -37.87528 -36.65014 -34.95977 -33.34245 -32.25688 -31.80249 -29.39340 -27.51003 -25.71254 -24.15760 -23.84871 -22.91102 -21.62818 -20.92023 -18.97518 -18.65052 -17.85402 -17.71207 -16.81359 -16.30206 -15.98749 -15.78564 -15.57560 -15.05634 -14.85090 -14.59779 -14.49813 -13.93039 -13.82069 -13.63778 -13.50708 -13.31374 -13.18980 -12.96048 -12.84951 -12.50958 -12.38732 -12.29133 -12.04541 -11.90170 -11.75657 -11.48973 -11.43176 -11.28075 -11.09373 -10.77436 -9.73548 -8.94172 -8.27723 -6.31629 1.13555 1.35116 1.37262 1.48121 1.77009 2.35222 2.88401 3.04983 3.23581 3.79454 3.86174 4.03824 4.05756 4.13667 4.28733 4.31308 4.38603 4.42395 4.53325 4.57741 4.68669 4.71651 4.76814 4.77335 4.89455 4.94732 4.95621 4.99105 5.04372 5.14829 5.15591 5.31006 5.33866 5.42176 5.54780 5.63195 6.01276 6.34126 6.43587 6.70878 6.75251 7.28767 7.31983 8.89384 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.004032 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.303996 B = 6943.447465 C = 7308.592300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 O -0.369 6.369 4 C 0.637 3.363 5 O -0.595 6.595 6 N -0.592 5.592 7 C 0.080 3.920 8 C 0.173 3.827 9 C -0.124 4.124 10 C 0.059 3.941 11 N -0.552 5.552 12 C 0.174 3.826 13 C -0.518 4.518 14 H 0.031 0.969 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.247 1.247 21 C 0.076 3.924 22 C -0.125 4.125 23 H 0.099 0.901 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.028 0.972 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.799 10.612 7.979 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.002 4.002 3 O -0.283 6.283 4 C 0.392 3.608 5 O -0.486 6.486 6 N -0.332 5.332 7 C -0.061 4.061 8 C 0.071 3.929 9 C -0.162 4.162 10 C -0.069 4.069 11 N -0.278 5.278 12 C 0.047 3.953 13 C -0.557 4.557 14 H 0.049 0.951 15 C -0.192 4.192 16 N -0.591 5.591 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.170 1.170 21 C -0.053 4.053 22 C -0.164 4.164 23 H 0.118 0.882 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.011 0.989 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.681 9.744 7.902 25.919 hybrid contribution 1.305 0.238 -0.157 1.336 sum -21.376 9.982 7.745 24.830 Atomic orbital electron populations 1.21811 0.89720 1.04409 1.03841 1.23167 0.96808 0.78106 1.02101 1.86224 1.21215 1.34067 1.86829 1.18412 0.81371 0.84557 0.76493 1.91024 1.60172 1.41036 1.56337 1.46935 1.07073 1.03642 1.75529 1.22042 0.93978 0.86890 1.03202 1.21159 0.76026 1.01001 0.94706 1.21952 0.94163 1.02413 0.97706 1.22060 0.94887 0.97077 0.92917 1.61690 1.08314 1.55409 1.02344 1.19903 0.85013 0.94394 0.96032 1.21288 0.92032 1.28154 1.14204 0.95111 1.25923 1.00398 0.95924 0.96981 1.70071 1.14941 1.40815 1.33306 0.85627 0.77886 0.80058 0.78806 1.19133 1.20641 1.17030 1.21773 0.94103 0.96137 0.93257 1.21956 0.94195 1.02178 0.98023 0.88199 0.90880 0.91137 0.92302 0.91901 0.91610 0.89935 0.88374 0.85841 0.92116 0.89322 0.91049 0.93791 0.95433 0.98854 0.92429 0.94442 0.93237 0.92414 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 10.29 71.98 0.74 -0.94 16 2 C 0.07 1.48 6.19 71.98 0.45 1.93 16 3 O -0.37 -8.93 9.04 -55.36 -0.50 -9.43 16 4 C 0.64 18.87 7.81 129.79 1.01 19.89 16 5 O -0.60 -22.88 12.30 19.80 0.24 -22.64 16 6 N -0.59 -14.11 2.83 -952.52 -2.70 -16.80 16 7 C 0.08 1.11 10.41 127.77 1.33 2.44 16 8 C 0.17 4.58 2.61 45.07 0.12 4.70 16 9 C -0.12 -3.67 5.33 30.65 0.16 -3.51 16 10 C 0.06 1.99 5.46 86.33 0.47 2.46 16 11 N -0.55 -24.45 4.65 -900.93 -4.19 -28.64 16 12 C 0.17 8.67 3.79 85.56 0.32 8.99 16 13 C -0.52 -31.47 8.98 25.60 0.23 -31.24 16 14 H 0.03 2.11 7.36 -2.91 -0.02 2.09 16 15 C 0.00 0.28 5.47 84.66 0.46 0.74 16 16 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 17 Si 0.95 44.99 27.47 68.60 1.88 46.87 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 21 C 0.08 3.07 5.29 86.33 0.46 3.53 16 22 C -0.12 -4.26 5.33 30.65 0.16 -4.09 16 23 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.05 7.37 -2.39 -0.02 1.03 16 30 H 0.10 0.88 7.92 -2.39 -0.02 0.87 16 31 H 0.12 2.46 7.80 -2.38 -0.02 2.44 16 32 H 0.06 2.28 6.11 -2.38 -0.01 2.26 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.07 2.38 8.01 -2.39 -0.02 2.36 16 35 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.03 1.35 7.42 -2.39 -0.02 1.33 16 37 H -0.01 -0.30 7.18 -2.39 -0.02 -0.31 16 38 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.05 2.38 6.70 -2.39 -0.02 2.37 16 41 H 0.06 2.43 6.10 -2.38 -0.01 2.42 16 42 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -77.61 329.69 1.89 -75.72 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.92 Total: 11.08 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.92 Total: 4.89 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -6.58 Total: -106.51 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.26 Total: -32.07 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -77.61 1.89 -75.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491076557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.005 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds