Wall clock time and date at job start Mon Mar 30 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47187 * 2 1 4 4 C 1.34638 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00208 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99834 * 179.72501 * 4 3 2 7 7 C 1.47080 * 120.88032 * 0.02562 * 6 4 3 8 8 C 1.53699 * 108.27697 * 128.75295 * 7 6 4 9 9 N 1.46892 * 109.25899 * 54.07918 * 8 7 6 10 10 C 1.46898 * 111.00025 * 172.60489 * 9 8 7 11 11 H 1.09012 * 109.46812 * 179.30168 * 10 9 8 12 12 C 1.53003 * 109.47115 * 59.30898 * 10 9 8 13 13 C 1.52994 * 109.47639 * 299.30157 * 10 9 8 14 14 C 1.50700 * 109.47204 * 295.00503 * 13 10 9 15 15 H 1.08002 * 119.99894 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99860 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99663 * 179.97438 * 16 14 13 18 18 Si 1.86790 * 120.00135 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47548 * 89.99856 * 18 16 14 20 20 H 1.48505 * 109.47153 * 210.00410 * 18 16 14 21 21 H 1.48504 * 109.47398 * 329.99878 * 18 16 14 22 22 C 1.46898 * 111.27199 * 296.75907 * 9 8 7 23 23 C 1.47074 * 120.88240 * 180.27715 * 6 4 3 24 24 H 1.09003 * 109.46990 * 300.00104 * 1 2 3 25 25 H 1.08997 * 109.47042 * 59.99813 * 1 2 3 26 26 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46990 * 239.99896 * 2 1 3 28 28 H 1.08997 * 109.47042 * 120.00187 * 2 1 3 29 29 H 1.09002 * 109.62409 * 248.51905 * 7 6 4 30 30 H 1.09001 * 109.63200 * 9.09754 * 7 6 4 31 31 H 1.09000 * 109.64873 * 294.07401 * 8 7 6 32 32 H 1.08997 * 109.41794 * 173.94747 * 8 7 6 33 33 H 1.08998 * 109.47472 * 59.99044 * 12 10 9 34 34 H 1.08993 * 109.47313 * 179.97438 * 12 10 9 35 35 H 1.09006 * 109.46354 * 299.99980 * 12 10 9 36 36 H 1.09005 * 109.46727 * 54.99806 * 13 10 9 37 37 H 1.08998 * 109.47420 * 174.99861 * 13 10 9 38 38 H 0.97004 * 119.99650 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.48847 * 303.14479 * 22 9 8 40 40 H 1.08994 * 109.51932 * 183.07828 * 22 9 8 41 41 H 1.09000 * 109.62843 * 350.89468 * 23 6 4 42 42 H 1.08996 * 109.63277 * 111.47831 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8640 2.7907 -0.0050 7 6 2.9861 3.9708 -0.0112 8 6 3.4306 4.9082 1.1228 9 7 4.8629 5.1996 0.9771 10 6 5.2909 6.2283 1.9345 11 1 6.3579 6.4159 1.8134 12 6 5.0169 5.7441 3.3598 13 6 4.5134 7.5204 1.6764 14 6 4.8777 8.0632 0.3185 15 1 5.5926 7.5391 -0.2984 16 6 4.2982 9.2288 -0.1361 17 7 4.6165 9.7027 -1.3209 18 14 3.0612 10.1347 0.9307 19 1 3.7724 11.1158 1.7891 20 1 2.0890 10.8483 0.0641 21 1 2.3385 9.1602 1.7871 22 6 5.6716 3.9812 1.1170 23 6 5.3189 3.0058 -0.0107 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.0698 4.4844 -0.9690 30 1 1.9540 3.6603 0.1520 31 1 3.2530 4.4288 2.0855 32 1 2.8630 5.8371 1.0685 33 1 5.5708 4.8235 3.5437 34 1 5.3348 6.5071 4.0702 35 1 3.9500 5.5564 3.4808 36 1 3.4437 7.3135 1.7099 37 1 4.7656 8.2551 2.4410 38 1 4.2092 10.5229 -1.6406 39 1 5.4628 3.5147 2.0797 40 1 6.7294 4.2375 1.0588 41 1 5.8299 2.0570 0.1530 42 1 5.6229 3.4283 -0.9683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492795539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:53 Heat of formation + Delta-G solvation = -70.370390 kcal Electronic energy + Delta-G solvation = -21847.163371 eV Core-core repulsion = 18634.670813 eV Total energy + Delta-G solvation = -3212.492558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56449 -38.82431 -36.70003 -35.34548 -32.76121 -31.90937 -30.99826 -30.64500 -27.94818 -26.46264 -23.88747 -23.33132 -22.84814 -21.66824 -20.05385 -19.06127 -17.64920 -16.97708 -16.66261 -16.59153 -15.40563 -14.81291 -14.79298 -14.61453 -14.18384 -14.03017 -13.67753 -13.20762 -12.95741 -12.93401 -12.51160 -12.21063 -12.04958 -11.95367 -11.87601 -11.75756 -11.45432 -11.38035 -10.87142 -10.71829 -10.67013 -10.59664 -10.34597 -10.23631 -9.67376 -9.58493 -9.07585 -8.68518 -8.46448 -7.62230 -5.94820 -3.89603 2.16691 2.87417 3.32160 3.40761 3.41585 3.87930 4.35994 4.50239 4.77145 4.81587 5.07057 5.11250 5.22093 5.28522 5.38396 5.41942 5.44603 5.56899 5.59089 5.62818 5.69610 5.77218 5.80615 5.83413 5.93566 6.04916 6.17518 6.26166 6.32510 6.40093 6.43850 6.59231 6.70401 7.04616 7.26400 7.43116 7.67079 7.72924 7.89177 8.32857 8.67433 9.17976 9.67865 11.18998 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.004736 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.639843 B = 5910.308375 C = 6339.664457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.650 3.350 5 O -0.584 6.584 6 N -0.590 5.590 7 C 0.116 3.884 8 C 0.041 3.959 9 N -0.508 5.508 10 C 0.097 3.903 11 H 0.079 0.921 12 C -0.187 4.187 13 C -0.009 4.009 14 C -0.493 4.493 15 H 0.080 0.920 16 C 0.063 3.937 17 N -0.906 5.906 18 Si 0.872 3.128 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.269 1.269 22 C 0.039 3.961 23 C 0.133 3.867 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.029 0.971 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.018 0.982 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.032 0.968 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -16.058 5.163 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.404 3.596 5 O -0.474 6.474 6 N -0.330 5.330 7 C -0.006 4.006 8 C -0.088 4.088 9 N -0.232 5.232 10 C -0.011 4.011 11 H 0.097 0.903 12 C -0.246 4.246 13 C -0.046 4.046 14 C -0.532 4.532 15 H 0.098 0.902 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.700 3.300 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.194 1.194 22 C -0.090 4.090 23 C 0.012 3.988 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.364 -16.072 4.560 17.546 hybrid contribution -0.806 0.270 1.331 1.579 sum -6.170 -15.801 5.891 17.957 Atomic orbital electron populations 1.21822 0.92680 1.02865 1.03624 1.22895 0.94715 0.79103 1.02539 1.86244 1.22340 1.32712 1.87119 1.17997 0.81011 0.84134 0.76459 1.90951 1.59826 1.39547 1.57123 1.47079 1.07965 1.02996 1.74966 1.22044 0.93181 0.84634 1.00779 1.22587 0.90988 0.99684 0.95541 1.62021 1.02001 1.07277 1.51870 1.21708 1.00590 0.92424 0.86410 0.90333 1.22565 1.01219 1.00778 1.00078 1.19734 0.95284 0.91537 0.98052 1.21046 1.25195 1.07057 0.99859 0.90215 1.25007 0.96562 0.97275 0.94826 1.69912 1.44268 1.22038 1.18373 0.86922 0.82067 0.80286 0.80746 1.20592 1.21600 1.19354 1.22490 0.99077 0.91133 0.96319 1.21795 0.77252 0.99619 1.00128 0.91484 0.91399 0.90182 0.91333 0.91437 0.89728 0.89356 0.95253 0.88046 0.93684 0.92400 0.93034 0.96417 0.96735 0.93021 0.95007 0.89470 0.88964 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.75 16 2 C 0.08 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -5.07 8.90 -40.32 -0.36 -5.43 16 4 C 0.65 10.26 8.44 54.06 0.46 10.72 16 5 O -0.58 -10.41 15.59 -19.28 -0.30 -10.71 16 6 N -0.59 -8.98 3.00 -177.99 -0.53 -9.51 16 7 C 0.12 1.72 6.64 -3.36 -0.02 1.70 16 8 C 0.04 0.66 4.78 -3.47 -0.02 0.65 16 9 N -0.51 -8.93 4.33 -226.08 -0.98 -9.91 16 10 C 0.10 1.79 2.29 -67.72 -0.16 1.63 16 11 H 0.08 1.50 8.07 -51.92 -0.42 1.08 16 12 C -0.19 -2.91 8.51 37.16 0.32 -2.59 16 13 C -0.01 -0.20 3.34 -27.89 -0.09 -0.29 16 14 C -0.49 -13.37 9.39 -34.44 -0.32 -13.70 16 15 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 16 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 17 N -0.91 -27.52 13.96 55.43 0.77 -26.75 16 18 Si 0.87 21.18 27.47 -169.99 -4.67 16.52 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 C 0.04 0.58 5.14 -3.72 -0.02 0.56 16 23 C 0.13 1.93 6.59 -3.62 -0.02 1.91 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.17 6.98 -51.93 -0.36 0.81 16 31 H 0.03 0.46 6.71 -51.93 -0.35 0.11 16 32 H 0.10 1.82 5.87 -51.93 -0.31 1.52 16 33 H 0.04 0.63 6.69 -51.93 -0.35 0.29 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 36 H 0.02 0.40 5.08 -51.93 -0.26 0.13 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.03 0.47 6.81 -51.93 -0.35 0.11 16 40 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 41 H 0.09 1.29 7.06 -51.93 -0.37 0.93 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -31.66 327.95 -7.38 -39.03 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.89 Total: -0.79 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 0.63 Total: 2.62 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.74 Total: -46.17 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.66 Total: -16.15 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.66 -7.38 -39.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.337 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds