Wall clock time and date at job start Mon Mar 30 2020 01:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45201 * 109.47187 * 2 1 4 4 C 1.34638 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00208 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99834 * 179.72501 * 4 3 2 7 7 C 1.47080 * 120.88032 * 0.02562 * 6 4 3 8 8 C 1.53699 * 108.27697 * 128.75295 * 7 6 4 9 9 N 1.46892 * 109.25899 * 54.07918 * 8 7 6 10 10 C 1.46898 * 111.00025 * 172.60489 * 9 8 7 11 11 H 1.09012 * 109.46812 * 179.30168 * 10 9 8 12 12 C 1.53003 * 109.47115 * 59.30898 * 10 9 8 13 13 C 1.52994 * 109.47639 * 299.30157 * 10 9 8 14 14 C 1.50700 * 109.47204 * 295.00503 * 13 10 9 15 15 H 1.08002 * 119.99894 * 359.97438 * 14 13 10 16 16 C 1.37882 * 119.99860 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99663 * 179.97438 * 16 14 13 18 18 Si 1.86790 * 120.00135 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47548 * 89.99856 * 18 16 14 20 20 H 1.48505 * 109.47153 * 210.00410 * 18 16 14 21 21 H 1.48504 * 109.47398 * 329.99878 * 18 16 14 22 22 C 1.46898 * 111.27199 * 296.75907 * 9 8 7 23 23 C 1.47074 * 120.88240 * 180.27715 * 6 4 3 24 24 H 1.09003 * 109.46990 * 300.00104 * 1 2 3 25 25 H 1.08997 * 109.47042 * 59.99813 * 1 2 3 26 26 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46990 * 239.99896 * 2 1 3 28 28 H 1.08997 * 109.47042 * 120.00187 * 2 1 3 29 29 H 1.09002 * 109.62409 * 248.51905 * 7 6 4 30 30 H 1.09001 * 109.63200 * 9.09754 * 7 6 4 31 31 H 1.09000 * 109.64873 * 294.07401 * 8 7 6 32 32 H 1.08997 * 109.41794 * 173.94747 * 8 7 6 33 33 H 1.08998 * 109.47472 * 59.99044 * 12 10 9 34 34 H 1.08993 * 109.47313 * 179.97438 * 12 10 9 35 35 H 1.09006 * 109.46354 * 299.99980 * 12 10 9 36 36 H 1.09005 * 109.46727 * 54.99806 * 13 10 9 37 37 H 1.08998 * 109.47420 * 174.99861 * 13 10 9 38 38 H 0.97004 * 119.99650 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.48847 * 303.14479 * 22 9 8 40 40 H 1.08994 * 109.51932 * 183.07828 * 22 9 8 41 41 H 1.09000 * 109.62843 * 350.89468 * 23 6 4 42 42 H 1.08996 * 109.63277 * 111.47831 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8640 2.7907 -0.0050 7 6 2.9861 3.9708 -0.0112 8 6 3.4306 4.9082 1.1228 9 7 4.8629 5.1996 0.9771 10 6 5.2909 6.2283 1.9345 11 1 6.3579 6.4159 1.8134 12 6 5.0169 5.7441 3.3598 13 6 4.5134 7.5204 1.6764 14 6 4.8777 8.0632 0.3185 15 1 5.5926 7.5391 -0.2984 16 6 4.2982 9.2288 -0.1361 17 7 4.6165 9.7027 -1.3209 18 14 3.0612 10.1347 0.9307 19 1 3.7724 11.1158 1.7891 20 1 2.0890 10.8483 0.0641 21 1 2.3385 9.1602 1.7871 22 6 5.6716 3.9812 1.1170 23 6 5.3189 3.0058 -0.0107 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.0698 4.4844 -0.9690 30 1 1.9540 3.6603 0.1520 31 1 3.2530 4.4288 2.0855 32 1 2.8630 5.8371 1.0685 33 1 5.5708 4.8235 3.5437 34 1 5.3348 6.5071 4.0702 35 1 3.9500 5.5564 3.4808 36 1 3.4437 7.3135 1.7099 37 1 4.7656 8.2551 2.4410 38 1 4.2092 10.5229 -1.6406 39 1 5.4628 3.5147 2.0797 40 1 6.7294 4.2375 1.0588 41 1 5.8299 2.0570 0.1530 42 1 5.6229 3.4283 -0.9683 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492795539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:52 Heat of formation + Delta-G solvation = -91.585939 kcal Electronic energy + Delta-G solvation = -21848.083346 eV Core-core repulsion = 18634.670813 eV Total energy + Delta-G solvation = -3213.412533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.75131 -40.10146 -37.87194 -36.69650 -34.69947 -33.01596 -32.16610 -31.97915 -29.66428 -27.69984 -25.18291 -24.59217 -24.19202 -22.90248 -21.39364 -20.38357 -18.88816 -18.72643 -18.14469 -17.72790 -16.74020 -16.42554 -15.94463 -15.81307 -15.67584 -15.30498 -14.85236 -14.62477 -14.30441 -14.14864 -13.82913 -13.59770 -13.36477 -13.17128 -13.04786 -12.87658 -12.71601 -12.52896 -12.41415 -12.25823 -11.97770 -11.88276 -11.60168 -11.52935 -11.52428 -11.30509 -11.02212 -10.63017 -9.93338 -8.93700 -8.12882 -6.11743 1.07563 1.41039 1.42611 1.52614 1.65219 2.45701 2.79122 3.03970 3.25596 3.87754 3.99096 4.03443 4.07286 4.10967 4.22782 4.28328 4.33811 4.37450 4.47210 4.53184 4.56604 4.73151 4.73937 4.81255 4.88239 4.93962 5.02692 5.04317 5.11270 5.13047 5.22730 5.27547 5.34030 5.39011 5.59247 5.78895 6.19362 6.34672 6.36805 6.55411 6.97365 7.13509 7.49190 9.04349 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.022509 B = 0.004736 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.639843 B = 5910.308375 C = 6339.664457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 O -0.372 6.372 4 C 0.649 3.351 5 O -0.608 6.608 6 N -0.591 5.591 7 C 0.123 3.877 8 C 0.045 3.955 9 N -0.533 5.533 10 C 0.100 3.900 11 H 0.067 0.933 12 C -0.176 4.176 13 C -0.006 4.006 14 C -0.487 4.487 15 H 0.038 0.962 16 C 0.000 4.000 17 N -0.958 5.958 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.245 1.245 22 C 0.046 3.954 23 C 0.135 3.865 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.041 0.959 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -17.116 7.173 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 O -0.286 6.286 4 C 0.404 3.596 5 O -0.500 6.500 6 N -0.331 5.331 7 C 0.001 3.999 8 C -0.083 4.083 9 N -0.257 5.257 10 C -0.008 4.008 11 H 0.085 0.915 12 C -0.235 4.235 13 C -0.044 4.044 14 C -0.526 4.526 15 H 0.056 0.944 16 C -0.195 4.195 17 N -0.601 5.601 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.219 1.219 21 H -0.169 1.169 22 C -0.082 4.082 23 C 0.014 3.986 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.826 -17.152 6.592 19.602 hybrid contribution -0.305 0.517 0.632 0.872 sum -7.131 -16.635 7.225 19.487 Atomic orbital electron populations 1.21842 0.90136 1.04544 1.03670 1.23242 0.96628 0.77638 1.02579 1.86262 1.20952 1.34716 1.86690 1.18089 0.81592 0.83837 0.76053 1.90930 1.60586 1.40229 1.58249 1.47129 1.08211 1.03020 1.74724 1.21963 0.94079 0.84257 0.99613 1.22514 0.90051 0.99143 0.96604 1.61930 1.03059 1.08427 1.52319 1.21507 0.99215 0.91335 0.88768 0.91504 1.22417 1.01762 1.01685 0.97614 1.19681 0.96142 0.93459 0.95084 1.21282 1.23506 1.06416 1.01390 0.94395 1.25893 0.98977 0.98522 0.96108 1.70085 1.46349 1.22886 1.20749 0.85822 0.79455 0.79231 0.79024 1.19904 1.21889 1.16880 1.22467 0.99074 0.89963 0.96723 1.21781 0.77204 0.99771 0.99829 0.91309 0.91414 0.87665 0.91442 0.91340 0.91159 0.87544 0.93946 0.89808 0.92000 0.91579 0.92610 0.95770 0.96270 0.93166 0.94095 0.88704 0.88328 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.29 71.98 0.74 -1.07 16 2 C 0.07 1.42 6.19 71.98 0.45 1.86 16 3 O -0.37 -9.65 8.90 -55.48 -0.49 -10.14 16 4 C 0.65 19.74 8.44 129.79 1.10 20.84 16 5 O -0.61 -21.09 15.59 19.80 0.31 -20.78 16 6 N -0.59 -17.35 3.00 -947.45 -2.85 -20.20 16 7 C 0.12 3.54 6.64 86.50 0.57 4.12 16 8 C 0.05 1.42 4.78 86.54 0.41 1.83 16 9 N -0.53 -18.28 4.33 -869.17 -3.76 -22.04 16 10 C 0.10 3.57 2.29 44.91 0.10 3.67 16 11 H 0.07 2.52 8.07 -2.38 -0.02 2.50 16 12 C -0.18 -4.93 8.51 71.98 0.61 -4.32 16 13 C -0.01 -0.27 3.34 29.85 0.10 -0.17 16 14 C -0.49 -26.83 9.39 25.60 0.24 -26.59 16 15 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 16 C 0.00 0.00 5.47 84.66 0.46 0.46 16 17 N -0.96 -59.85 13.96 21.45 0.30 -59.55 16 18 Si 0.94 43.40 27.47 68.60 1.88 45.28 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 22 C 0.05 1.30 5.14 86.37 0.44 1.75 16 23 C 0.14 3.81 6.59 86.34 0.57 4.38 16 24 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.11 2.65 6.98 -2.39 -0.02 2.64 16 31 H 0.04 1.22 6.71 -2.39 -0.02 1.20 16 32 H 0.08 2.91 5.87 -2.39 -0.01 2.89 16 33 H 0.06 1.54 6.69 -2.39 -0.02 1.52 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.05 1.52 6.56 -2.38 -0.02 1.51 16 36 H 0.02 1.04 5.08 -2.38 -0.01 1.02 16 37 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 38 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.04 1.09 6.81 -2.39 -0.02 1.08 16 40 H 0.09 2.51 8.05 -2.39 -0.02 2.49 16 41 H 0.10 2.67 7.06 -2.39 -0.02 2.65 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -68.56 327.95 2.13 -66.43 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.94 Total: 14.25 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 5.80 Total: 6.75 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -6.31 Total: -101.79 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.19 Total: -30.92 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Total: -68.56 2.13 -66.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492795539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.158 kcal (2) G-P(sol) polarization free energy of solvation -68.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds