Wall clock time and date at job start Mon Mar 30 2020 01:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47140 * 2 1 4 4 C 1.34635 * 117.00134 * 179.97438 * 3 2 1 5 5 O 1.21510 * 120.00228 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00158 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.62829 * 359.97438 * 6 4 3 8 8 C 1.53191 * 108.77343 * 126.41175 * 7 6 4 9 9 C 1.53039 * 109.31416 * 54.63452 * 8 7 6 10 10 C 1.53070 * 109.65812 * 298.69913 * 9 8 7 11 11 H 1.08997 * 109.38860 * 301.27396 * 10 9 8 12 12 C 1.52997 * 109.62317 * 181.16862 * 10 9 8 13 13 H 1.09002 * 109.47201 * 60.10273 * 12 10 9 14 14 C 1.53008 * 109.47085 * 300.10671 * 12 10 9 15 15 N 1.46497 * 109.47570 * 180.10955 * 12 10 9 16 16 C 1.36939 * 120.00213 * 205.00178 * 15 12 10 17 17 H 1.07994 * 119.99690 * 359.97438 * 16 15 12 18 18 C 1.38806 * 119.99999 * 179.97438 * 16 15 12 19 19 N 1.31618 * 120.00269 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00163 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46960 * 90.00057 * 20 18 16 22 22 H 1.48501 * 109.47203 * 210.00087 * 20 18 16 23 23 H 1.48502 * 109.47100 * 329.99942 * 20 18 16 24 24 C 1.46919 * 120.63188 * 180.02562 * 6 4 3 25 25 H 1.09001 * 109.47383 * 60.00274 * 1 2 3 26 26 H 1.09000 * 109.46668 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47145 * 299.99978 * 1 2 3 28 28 H 1.08997 * 109.47515 * 239.99807 * 2 1 3 29 29 H 1.09001 * 109.47383 * 119.99726 * 2 1 3 30 30 H 1.08998 * 109.58787 * 246.20220 * 7 6 4 31 31 H 1.09007 * 109.58600 * 6.48533 * 7 6 4 32 32 H 1.09002 * 109.49529 * 174.58688 * 8 7 6 33 33 H 1.09001 * 109.49774 * 294.68244 * 8 7 6 34 34 H 1.09007 * 109.45640 * 58.65727 * 9 8 7 35 35 H 1.09000 * 109.45893 * 178.62518 * 9 8 7 36 36 H 1.09001 * 109.46732 * 59.99697 * 14 12 10 37 37 H 1.08998 * 109.46914 * 179.97438 * 14 12 10 38 38 H 1.08999 * 109.47070 * 300.00288 * 14 12 10 39 39 H 0.97001 * 119.99804 * 24.99541 * 15 12 10 40 40 H 0.96998 * 120.00153 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58751 * 353.37646 * 24 6 4 42 42 H 1.08996 * 109.58750 * 113.65831 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0000 7 6 2.9817 3.9658 -0.0016 8 6 3.3731 4.8779 1.1653 9 6 4.8638 5.2110 1.0694 10 6 5.6863 3.9236 1.1657 11 1 5.4675 3.4242 2.1095 12 6 7.1772 4.2603 1.0991 13 1 7.4387 4.9179 1.9281 14 6 7.4827 4.9632 -0.2252 15 7 7.9612 3.0260 1.1889 16 6 9.2475 3.0643 1.6570 17 1 9.6842 4.0046 1.9596 18 6 9.9901 1.8947 1.7426 19 7 11.2262 1.9314 2.1930 20 14 9.2345 0.2682 1.2198 21 1 9.5023 0.0390 -0.2228 22 1 9.8324 -0.8339 2.0155 23 1 7.7681 0.3066 1.4511 24 6 5.3182 2.9994 0.0001 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.0945 4.5061 -0.9415 31 1 1.9462 3.6454 0.1137 32 1 2.7910 5.7983 1.1187 33 1 3.1741 4.3682 2.1080 34 1 5.0663 5.6985 0.1157 35 1 5.1396 5.8796 1.8848 36 1 6.8994 5.8815 -0.2921 37 1 8.5448 5.2034 -0.2725 38 1 7.2212 4.3056 -1.0543 39 1 7.5690 2.1815 0.9168 40 1 11.7453 1.1141 2.2524 41 1 5.8247 2.0416 0.1189 42 1 5.6215 3.4588 -0.9407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495488553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:14 Heat of formation + Delta-G solvation = -75.059507 kcal Electronic energy + Delta-G solvation = -21932.015753 eV Core-core repulsion = 18719.319860 eV Total energy + Delta-G solvation = -3212.695894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65548 -38.77483 -36.47008 -35.61211 -33.09181 -31.97974 -31.68338 -30.17617 -28.20898 -25.71935 -24.54205 -23.19097 -22.98754 -21.36772 -20.48143 -18.88607 -18.20012 -17.42162 -16.87366 -16.65317 -15.13934 -14.82944 -14.69573 -14.59888 -14.20031 -13.93254 -13.49074 -13.21465 -13.09196 -13.01081 -12.66563 -12.59278 -12.19343 -12.01819 -11.78980 -11.64662 -11.32530 -11.11389 -10.89181 -10.70061 -10.61641 -10.55503 -10.44173 -10.30747 -10.05875 -9.89905 -9.50482 -8.88650 -8.63429 -7.22811 -5.72120 -3.07572 2.11737 2.87359 3.46195 3.52674 3.55922 3.80572 4.66224 4.70679 4.74722 4.80056 4.87830 4.88560 5.08342 5.10861 5.22666 5.29885 5.46875 5.50648 5.55461 5.58694 5.61066 5.70050 5.76517 5.78028 5.82166 5.96860 6.00992 6.17269 6.20102 6.25914 6.33898 6.47786 6.49525 6.62530 6.79461 7.05509 7.37308 8.03980 8.32884 8.46938 9.25690 9.98850 10.17724 11.46067 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005845 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.609468 B = 4789.350674 C = 6054.965159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 O -0.373 6.373 4 C 0.646 3.354 5 O -0.569 6.569 6 N -0.591 5.591 7 C 0.112 3.888 8 C -0.134 4.134 9 C -0.115 4.115 10 C -0.109 4.109 11 H 0.075 0.925 12 C 0.186 3.814 13 H 0.060 0.940 14 C -0.170 4.170 15 N -0.750 5.750 16 C -0.243 4.243 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.935 5.935 20 Si 0.877 3.123 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.273 1.273 24 C 0.128 3.872 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.095 0.905 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.214 4.204 -5.366 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.005 3.995 3 O -0.288 6.288 4 C 0.400 3.600 5 O -0.457 6.457 6 N -0.332 5.332 7 C -0.010 4.010 8 C -0.173 4.173 9 C -0.153 4.153 10 C -0.129 4.129 11 H 0.094 0.906 12 C 0.076 3.924 13 H 0.078 0.922 14 C -0.230 4.230 15 N -0.394 5.394 16 C -0.372 4.372 17 H 0.108 0.892 18 C -0.189 4.189 19 N -0.583 5.583 20 Si 0.707 3.293 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.199 1.199 24 C 0.008 3.992 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.811 3.895 -5.263 23.732 hybrid contribution -0.331 -1.385 -0.344 1.465 sum -23.142 2.510 -5.607 23.944 Atomic orbital electron populations 1.21814 0.92684 1.02947 1.03365 1.22920 0.94613 0.79076 1.02850 1.86194 1.22408 1.32851 1.87301 1.18048 0.81005 0.84287 0.76671 1.91031 1.59647 1.39359 1.55712 1.47028 1.07792 1.02693 1.75659 1.21719 0.94072 0.86249 0.98976 1.21934 0.97370 0.99346 0.98626 1.21626 0.93515 0.97368 1.02749 1.21875 0.96837 0.95617 0.98546 0.90624 1.20146 0.87115 0.89160 0.95977 0.92235 1.22549 1.01867 0.99071 0.99530 1.42895 1.13434 1.03937 1.79130 1.19059 0.87299 0.95737 1.35132 0.89155 1.24632 0.95887 0.97231 1.01147 1.69698 1.08878 1.27321 1.52372 0.86663 0.79085 0.85112 0.78467 1.21035 1.21739 1.19883 1.21900 0.76211 1.01865 0.99250 0.91577 0.90119 0.91537 0.91267 0.91209 0.91286 0.89402 0.90672 0.91540 0.91167 0.91257 0.93800 0.92297 0.93427 0.80484 0.93115 0.88648 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.08 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -4.94 8.86 -40.31 -0.36 -5.30 16 4 C 0.65 10.55 8.43 54.06 0.46 11.01 16 5 O -0.57 -11.49 15.55 -19.28 -0.30 -11.79 16 6 N -0.59 -8.55 2.97 -178.53 -0.53 -9.08 16 7 C 0.11 1.18 6.45 -3.71 -0.02 1.15 16 8 C -0.13 -1.31 6.08 -26.61 -0.16 -1.48 16 9 C -0.11 -1.32 4.78 -26.67 -0.13 -1.45 16 10 C -0.11 -1.69 2.33 -90.46 -0.21 -1.90 16 11 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 12 C 0.19 3.47 2.73 -67.93 -0.19 3.28 16 13 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 14 C -0.17 -2.83 8.80 37.16 0.33 -2.51 16 15 N -0.75 -17.95 4.85 -53.43 -0.26 -18.21 16 16 C -0.24 -6.91 10.41 -15.06 -0.16 -7.06 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 18 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -29.89 13.97 55.49 0.78 -29.11 16 20 Si 0.88 23.31 27.73 -169.99 -4.71 18.59 16 21 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 23 H -0.27 -7.11 6.52 56.52 0.37 -6.75 16 24 C 0.13 2.07 5.21 -3.69 -0.02 2.05 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.84 6.93 -51.92 -0.36 0.48 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.77 6.32 -51.93 -0.33 0.45 16 39 H 0.36 8.80 4.03 -40.82 -0.16 8.63 16 40 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 41 H 0.10 1.88 5.59 -51.93 -0.29 1.59 16 42 H 0.08 1.17 6.18 -51.93 -0.32 0.85 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -34.21 327.87 -6.83 -41.04 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.80 Total: 5.30 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.41 Total: 3.62 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.01 Total: -56.40 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.66 Total: -17.09 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.71 Total: 18.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.21 -6.83 -41.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495488553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.017 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds