Wall clock time and date at job start Mon Mar 30 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.47140 * 2 1 4 4 C 1.34635 * 117.00134 * 179.97438 * 3 2 1 5 5 O 1.21510 * 120.00228 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00158 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.62829 * 359.97438 * 6 4 3 8 8 C 1.53191 * 108.77343 * 126.41175 * 7 6 4 9 9 C 1.53039 * 109.31416 * 54.63452 * 8 7 6 10 10 C 1.53070 * 109.65812 * 298.69913 * 9 8 7 11 11 H 1.08997 * 109.38860 * 301.27396 * 10 9 8 12 12 C 1.52997 * 109.62317 * 181.16862 * 10 9 8 13 13 H 1.09002 * 109.47201 * 60.10273 * 12 10 9 14 14 C 1.53008 * 109.47085 * 300.10671 * 12 10 9 15 15 N 1.46497 * 109.47570 * 180.10955 * 12 10 9 16 16 C 1.36939 * 120.00213 * 205.00178 * 15 12 10 17 17 H 1.07994 * 119.99690 * 359.97438 * 16 15 12 18 18 C 1.38806 * 119.99999 * 179.97438 * 16 15 12 19 19 N 1.31618 * 120.00269 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00163 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46960 * 90.00057 * 20 18 16 22 22 H 1.48501 * 109.47203 * 210.00087 * 20 18 16 23 23 H 1.48502 * 109.47100 * 329.99942 * 20 18 16 24 24 C 1.46919 * 120.63188 * 180.02562 * 6 4 3 25 25 H 1.09001 * 109.47383 * 60.00274 * 1 2 3 26 26 H 1.09000 * 109.46668 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47145 * 299.99978 * 1 2 3 28 28 H 1.08997 * 109.47515 * 239.99807 * 2 1 3 29 29 H 1.09001 * 109.47383 * 119.99726 * 2 1 3 30 30 H 1.08998 * 109.58787 * 246.20220 * 7 6 4 31 31 H 1.09007 * 109.58600 * 6.48533 * 7 6 4 32 32 H 1.09002 * 109.49529 * 174.58688 * 8 7 6 33 33 H 1.09001 * 109.49774 * 294.68244 * 8 7 6 34 34 H 1.09007 * 109.45640 * 58.65727 * 9 8 7 35 35 H 1.09000 * 109.45893 * 178.62518 * 9 8 7 36 36 H 1.09001 * 109.46732 * 59.99697 * 14 12 10 37 37 H 1.08998 * 109.46914 * 179.97438 * 14 12 10 38 38 H 1.08999 * 109.47070 * 300.00288 * 14 12 10 39 39 H 0.97001 * 119.99804 * 24.99541 * 15 12 10 40 40 H 0.96998 * 120.00153 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58751 * 353.37646 * 24 6 4 42 42 H 1.08996 * 109.58750 * 113.65831 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0000 7 6 2.9817 3.9658 -0.0016 8 6 3.3731 4.8779 1.1653 9 6 4.8638 5.2110 1.0694 10 6 5.6863 3.9236 1.1657 11 1 5.4675 3.4242 2.1095 12 6 7.1772 4.2603 1.0991 13 1 7.4387 4.9179 1.9281 14 6 7.4827 4.9632 -0.2252 15 7 7.9612 3.0260 1.1889 16 6 9.2475 3.0643 1.6570 17 1 9.6842 4.0046 1.9596 18 6 9.9901 1.8947 1.7426 19 7 11.2262 1.9314 2.1930 20 14 9.2345 0.2682 1.2198 21 1 9.5023 0.0390 -0.2228 22 1 9.8324 -0.8339 2.0155 23 1 7.7681 0.3066 1.4511 24 6 5.3182 2.9994 0.0001 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.0945 4.5061 -0.9415 31 1 1.9462 3.6454 0.1137 32 1 2.7910 5.7983 1.1187 33 1 3.1741 4.3682 2.1080 34 1 5.0663 5.6985 0.1157 35 1 5.1396 5.8796 1.8848 36 1 6.8994 5.8815 -0.2921 37 1 8.5448 5.2034 -0.2725 38 1 7.2212 4.3056 -1.0543 39 1 7.5690 2.1815 0.9168 40 1 11.7453 1.1141 2.2524 41 1 5.8247 2.0416 0.1189 42 1 5.6215 3.4588 -0.9407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495488553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:13 Heat of formation + Delta-G solvation = -98.298187 kcal Electronic energy + Delta-G solvation = -21933.023458 eV Core-core repulsion = 18719.319860 eV Total energy + Delta-G solvation = -3213.703598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82439 -39.96421 -37.71062 -37.08337 -34.74143 -33.45131 -32.47042 -31.85854 -29.64779 -26.78537 -26.15538 -24.52731 -24.02725 -22.54346 -21.76117 -20.35503 -19.66590 -18.99323 -18.08992 -17.73318 -16.75109 -16.29852 -15.97579 -15.73290 -15.53784 -15.15919 -14.74833 -14.52760 -14.39558 -14.19412 -14.07052 -13.69600 -13.50984 -13.12355 -12.98098 -12.93708 -12.68223 -12.55003 -12.41267 -12.11264 -11.93346 -11.87084 -11.80919 -11.65912 -11.57303 -11.34606 -11.23188 -10.99570 -9.78227 -9.32626 -8.05279 -5.35798 1.02873 1.31749 1.34844 1.40852 1.63329 2.42970 2.82663 3.27150 3.51851 3.80130 3.85273 3.90760 3.98716 4.07501 4.10919 4.27541 4.32530 4.34552 4.53662 4.60351 4.64011 4.71148 4.79547 4.83575 4.88286 4.91557 5.05557 5.09357 5.11881 5.14541 5.23033 5.32776 5.37575 5.41521 5.48194 5.67618 5.77928 6.20621 6.22810 7.06506 7.13211 7.85022 8.00602 9.16605 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.005845 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.609468 B = 4789.350674 C = 6054.965159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 O -0.363 6.363 4 C 0.639 3.361 5 O -0.618 6.618 6 N -0.588 5.588 7 C 0.107 3.893 8 C -0.127 4.127 9 C -0.109 4.109 10 C -0.097 4.097 11 H 0.052 0.948 12 C 0.176 3.824 13 H 0.052 0.948 14 C -0.160 4.160 15 N -0.758 5.758 16 C -0.220 4.220 17 H 0.066 0.934 18 C -0.056 4.056 19 N -0.981 5.981 20 Si 0.938 3.062 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.270 1.270 24 C 0.132 3.868 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.032 0.968 38 H 0.051 0.949 39 H 0.360 0.640 40 H 0.257 0.743 41 H 0.053 0.947 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.578 5.709 -6.492 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.004 4.004 3 O -0.277 6.277 4 C 0.394 3.606 5 O -0.510 6.510 6 N -0.328 5.328 7 C -0.014 4.014 8 C -0.165 4.165 9 C -0.147 4.147 10 C -0.117 4.117 11 H 0.070 0.930 12 C 0.069 3.931 13 H 0.070 0.930 14 C -0.219 4.219 15 N -0.401 5.401 16 C -0.351 4.351 17 H 0.084 0.916 18 C -0.248 4.248 19 N -0.632 5.632 20 Si 0.767 3.233 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.196 1.196 24 C 0.010 3.990 25 H 0.093 0.907 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.131 0.869 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.193 0.807 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.261 5.462 -6.405 27.577 hybrid contribution 0.639 -1.756 0.025 1.869 sum -25.621 3.706 -6.381 26.663 Atomic orbital electron populations 1.21818 0.89357 1.04554 1.03988 1.23246 0.97064 0.77932 1.02177 1.86219 1.20394 1.34274 1.86788 1.18326 0.81672 0.84338 0.76262 1.90994 1.60930 1.41129 1.57969 1.47127 1.07590 1.03392 1.74673 1.22075 0.93861 0.84911 1.00554 1.21919 0.96302 1.00618 0.97660 1.21633 0.93996 0.94890 1.04179 1.21711 0.95071 0.97735 0.97206 0.92967 1.20455 0.88622 0.87099 0.96960 0.92997 1.22399 1.00904 1.00733 0.97900 1.43032 1.12306 1.05949 1.78848 1.19091 0.88821 0.94485 1.32696 0.91572 1.25264 0.96439 1.00381 1.02672 1.69836 1.10423 1.27959 1.54993 0.85675 0.78219 0.81364 0.78054 1.20589 1.21980 1.19583 1.21721 0.77273 0.99901 1.00064 0.90735 0.88010 0.91034 0.91761 0.92275 0.88842 0.88176 0.86942 0.92738 0.89239 0.90356 0.89511 0.94896 0.92999 0.80693 0.93404 0.92806 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.07 1.45 6.19 71.98 0.45 1.89 16 3 O -0.36 -9.13 8.86 -55.44 -0.49 -9.62 16 4 C 0.64 20.54 8.43 129.79 1.09 21.64 16 5 O -0.62 -25.50 15.55 19.81 0.31 -25.20 16 6 N -0.59 -15.98 2.97 -949.14 -2.82 -18.80 16 7 C 0.11 1.82 6.45 86.36 0.56 2.37 16 8 C -0.13 -1.93 6.08 30.67 0.19 -1.75 16 9 C -0.11 -2.09 4.78 30.63 0.15 -1.95 16 10 C -0.10 -2.87 2.33 -10.69 -0.02 -2.90 16 11 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 12 C 0.18 6.44 2.73 44.99 0.12 6.56 16 13 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 14 C -0.16 -4.99 8.80 71.98 0.63 -4.36 16 15 N -0.76 -36.61 4.85 -322.94 -1.57 -38.17 16 16 C -0.22 -12.81 10.41 84.03 0.87 -11.93 16 17 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 18 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 19 N -0.98 -64.55 13.97 21.65 0.30 -64.24 16 20 Si 0.94 49.66 27.73 68.60 1.90 51.56 16 21 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 22 H -0.29 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.27 -14.00 6.52 99.48 0.65 -13.36 16 24 C 0.13 4.10 5.21 86.38 0.45 4.55 16 25 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 1.51 6.93 -2.38 -0.02 1.49 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.42 6.50 -2.38 -0.02 1.40 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.97 6.46 -2.39 -0.02 1.95 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.57 6.32 -2.39 -0.02 1.56 16 39 H 0.36 17.72 4.03 -92.71 -0.37 17.34 16 40 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.05 2.15 5.59 -2.39 -0.01 2.14 16 42 H 0.09 2.59 6.18 -2.39 -0.01 2.58 16 Total: -1.00 -77.65 327.87 3.90 -73.76 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.57 Total: 20.44 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.69 Total: 10.27 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -4.09 Total: -121.22 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.18 Total: -34.81 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 1.90 Total: 51.56 kcal Total: -77.65 3.90 -73.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495488553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.542 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds