Wall clock time and date at job start Mon Mar 30 2020 01:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34640 * 116.99989 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00146 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.46930 * 120.62686 * 359.97438 * 6 4 3 8 8 C 1.53191 * 108.77617 * 233.58780 * 7 6 4 9 9 C 1.53045 * 109.31092 * 305.36350 * 8 7 6 10 10 C 1.53043 * 109.53334 * 61.36688 * 9 8 7 11 11 H 1.09004 * 109.49899 * 58.59097 * 10 9 8 12 12 C 1.53003 * 109.49586 * 178.68021 * 10 9 8 13 13 H 1.08997 * 109.46837 * 59.99731 * 12 10 9 14 14 C 1.52998 * 109.47163 * 300.00336 * 12 10 9 15 15 N 1.46496 * 109.47169 * 180.02562 * 12 10 9 16 16 C 1.36939 * 119.99786 * 204.99992 * 15 12 10 17 17 H 1.08000 * 120.00186 * 0.02562 * 16 15 12 18 18 C 1.38818 * 119.99750 * 179.97438 * 16 15 12 19 19 N 1.31619 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46767 * 60.00436 * 20 18 16 22 22 H 1.48493 * 109.47102 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47276 * 300.00296 * 20 18 16 24 24 C 1.46923 * 120.63406 * 179.72231 * 6 4 3 25 25 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 30 30 H 1.09003 * 109.58575 * 353.37730 * 7 6 4 31 31 H 1.09006 * 109.58555 * 113.79837 * 7 6 4 32 32 H 1.08994 * 109.49968 * 65.31957 * 8 7 6 33 33 H 1.08999 * 109.49676 * 185.38513 * 8 7 6 34 34 H 1.08998 * 109.46008 * 181.38611 * 9 8 7 35 35 H 1.08999 * 109.46284 * 301.36137 * 9 8 7 36 36 H 1.09003 * 109.47104 * 299.99711 * 14 12 10 37 37 H 1.08998 * 109.47353 * 59.99610 * 14 12 10 38 38 H 1.08999 * 109.47092 * 180.02562 * 14 12 10 39 39 H 0.97000 * 119.99925 * 25.00312 * 15 12 10 40 40 H 0.96997 * 119.99947 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.58469 * 246.20065 * 24 6 4 42 42 H 1.08998 * 109.58115 * 6.62946 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0011 7 6 2.9817 3.9658 0.0006 8 6 3.3750 4.8772 -1.1663 9 6 4.8655 5.2104 -1.0681 10 6 5.6853 3.9217 -1.1641 11 1 5.4662 3.4205 -2.1070 12 6 7.1763 4.2589 -1.0989 13 1 7.3947 4.7588 -0.1553 14 6 7.5415 5.1833 -2.2621 15 7 7.9606 3.0250 -1.1915 16 6 9.2229 2.9749 -0.6631 17 1 9.6401 3.8448 -0.1778 18 6 9.9659 1.8055 -0.7504 19 7 9.4571 0.7452 -1.3414 20 14 11.6881 1.7372 -0.0302 21 1 11.6265 2.0152 1.4272 22 1 12.2647 0.3871 -0.2532 23 1 12.5424 2.7553 -0.6927 24 6 5.3182 2.9995 0.0078 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.9466 3.6455 -0.1187 31 1 3.0929 4.5067 0.9404 32 1 3.1775 4.3670 -2.1090 33 1 2.7923 5.7973 -1.1216 34 1 5.1426 5.8788 -1.8833 35 1 5.0665 5.6982 -0.1143 36 1 7.3230 4.6834 -3.2058 37 1 6.9579 6.1013 -2.1937 38 1 8.6037 5.4231 -2.2159 39 1 7.5857 2.2436 -1.6271 40 1 9.9764 -0.0718 -1.4027 41 1 5.6165 3.4630 0.9481 42 1 5.8252 2.0414 -0.1068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495488554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:16 Heat of formation + Delta-G solvation = -80.828891 kcal Electronic energy + Delta-G solvation = -21760.469616 eV Core-core repulsion = 18547.523543 eV Total energy + Delta-G solvation = -3212.946073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.44847 -38.50319 -36.28635 -35.40573 -32.98997 -31.81681 -31.54990 -29.79101 -28.16201 -25.44893 -24.17626 -23.13623 -22.80637 -21.34412 -19.98506 -19.46899 -17.85623 -17.02551 -16.70813 -16.50441 -14.93758 -14.76186 -14.60566 -14.28874 -14.01242 -13.72172 -13.41040 -13.13650 -12.93070 -12.86151 -12.71053 -12.32817 -11.99403 -11.90222 -11.65254 -11.30091 -11.06689 -10.95646 -10.81305 -10.67293 -10.58922 -10.45338 -10.27135 -10.16946 -10.12555 -9.75460 -9.50875 -8.85280 -8.48075 -6.88613 -5.67701 -2.97222 2.29514 3.06695 3.48937 3.53102 3.54594 3.97398 4.63653 4.84993 4.86034 4.92718 4.98603 5.03901 5.20753 5.26300 5.40280 5.43212 5.62402 5.65104 5.66439 5.71517 5.79505 5.84449 5.85665 5.96916 6.04175 6.16799 6.23075 6.24455 6.33716 6.46879 6.54893 6.57248 6.76231 6.77406 6.95148 7.13882 7.57185 7.76373 8.49790 8.52712 9.60817 10.18655 10.53048 11.54452 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.005102 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.037826 B = 5486.498724 C = 6670.365049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 O -0.375 6.375 4 C 0.644 3.356 5 O -0.562 6.562 6 N -0.592 5.592 7 C 0.112 3.888 8 C -0.134 4.134 9 C -0.115 4.115 10 C -0.104 4.104 11 H 0.071 0.929 12 C 0.180 3.820 13 H 0.048 0.952 14 C -0.164 4.164 15 N -0.724 5.724 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.011 4.011 19 N -0.929 5.929 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C 0.137 3.863 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.069 0.931 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.755 6.642 1.838 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.006 3.994 3 O -0.290 6.290 4 C 0.398 3.602 5 O -0.450 6.450 6 N -0.333 5.333 7 C -0.011 4.011 8 C -0.172 4.172 9 C -0.153 4.153 10 C -0.124 4.124 11 H 0.089 0.911 12 C 0.070 3.930 13 H 0.066 0.934 14 C -0.224 4.224 15 N -0.366 5.366 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.214 1.214 24 C 0.017 3.983 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.407 6.270 1.935 19.542 hybrid contribution 0.930 -0.421 0.156 1.033 sum -17.477 5.848 2.091 18.548 Atomic orbital electron populations 1.21808 0.92851 1.02852 1.03266 1.22893 0.94459 0.79227 1.02867 1.86185 1.22689 1.32717 1.87453 1.18064 0.80889 0.84405 0.76867 1.91063 1.59468 1.39220 1.55258 1.47079 1.08036 1.02479 1.75699 1.21692 0.94111 0.86468 0.98795 1.21931 0.97370 0.99234 0.98672 1.21641 0.93628 0.97668 1.02401 1.21869 0.96686 0.95264 0.98578 0.91067 1.20173 0.87637 0.89011 0.96208 0.93428 1.22479 1.01110 0.98557 1.00301 1.42454 1.15045 1.09754 1.69355 1.19157 0.91255 0.96963 1.29791 0.91312 1.24732 0.98476 0.96108 1.01440 1.69659 1.37365 1.02339 1.48371 0.86314 0.84758 0.76549 0.78816 1.21324 1.21779 1.21404 1.21856 0.75464 1.02824 0.98196 0.91611 0.90197 0.91659 0.91291 0.91212 0.89572 0.91475 0.91614 0.90925 0.91128 0.91781 0.93614 0.94252 0.92858 0.78167 0.93486 0.91312 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.08 0.94 6.19 37.16 0.23 1.17 16 3 O -0.38 -5.38 8.86 -40.32 -0.36 -5.73 16 4 C 0.64 11.33 8.43 54.06 0.46 11.79 16 5 O -0.56 -12.22 15.54 -19.28 -0.30 -12.52 16 6 N -0.59 -9.32 2.97 -178.32 -0.53 -9.85 16 7 C 0.11 1.30 6.44 -3.71 -0.02 1.27 16 8 C -0.13 -1.42 6.08 -26.61 -0.16 -1.59 16 9 C -0.12 -1.43 4.85 -26.69 -0.13 -1.56 16 10 C -0.10 -1.71 1.98 -90.30 -0.18 -1.89 16 11 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 12 C 0.18 3.50 2.47 -67.93 -0.17 3.33 16 13 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 14 C -0.16 -2.92 9.14 37.16 0.34 -2.58 16 15 N -0.72 -18.17 4.52 -53.43 -0.24 -18.41 16 16 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 20 Si 0.90 22.80 29.55 -169.99 -5.02 17.77 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.14 2.43 5.50 -3.51 -0.02 2.42 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.91 6.93 -51.93 -0.36 0.55 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.04 0.57 6.40 -51.93 -0.33 0.24 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.38 10.52 7.64 -40.82 -0.31 10.21 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.11 2.45 6.54 -51.93 -0.34 2.11 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -32.95 336.55 -7.31 -40.26 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.13 Total: 7.24 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 0.48 Total: 4.29 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.05 Total: -56.38 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.66 Total: -18.25 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.95 -7.31 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495488554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.574 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds