Wall clock time and date at job start Mon Mar 30 2020 01:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46884 * 2 1 4 4 C 1.34640 * 116.99989 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00146 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00276 * 180.02562 * 4 3 2 7 7 C 1.46930 * 120.62686 * 359.97438 * 6 4 3 8 8 C 1.53191 * 108.77617 * 233.58780 * 7 6 4 9 9 C 1.53045 * 109.31092 * 305.36350 * 8 7 6 10 10 C 1.53043 * 109.53334 * 61.36688 * 9 8 7 11 11 H 1.09004 * 109.49899 * 58.59097 * 10 9 8 12 12 C 1.53003 * 109.49586 * 178.68021 * 10 9 8 13 13 H 1.08997 * 109.46837 * 59.99731 * 12 10 9 14 14 C 1.52998 * 109.47163 * 300.00336 * 12 10 9 15 15 N 1.46496 * 109.47169 * 180.02562 * 12 10 9 16 16 C 1.36939 * 119.99786 * 204.99992 * 15 12 10 17 17 H 1.08000 * 120.00186 * 0.02562 * 16 15 12 18 18 C 1.38818 * 119.99750 * 179.97438 * 16 15 12 19 19 N 1.31619 * 119.99911 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99938 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46767 * 60.00436 * 20 18 16 22 22 H 1.48493 * 109.47102 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47276 * 300.00296 * 20 18 16 24 24 C 1.46923 * 120.63406 * 179.72231 * 6 4 3 25 25 H 1.08992 * 109.47399 * 59.99654 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99482 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00338 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00518 * 2 1 3 30 30 H 1.09003 * 109.58575 * 353.37730 * 7 6 4 31 31 H 1.09006 * 109.58555 * 113.79837 * 7 6 4 32 32 H 1.08994 * 109.49968 * 65.31957 * 8 7 6 33 33 H 1.08999 * 109.49676 * 185.38513 * 8 7 6 34 34 H 1.08998 * 109.46008 * 181.38611 * 9 8 7 35 35 H 1.08999 * 109.46284 * 301.36137 * 9 8 7 36 36 H 1.09003 * 109.47104 * 299.99711 * 14 12 10 37 37 H 1.08998 * 109.47353 * 59.99610 * 14 12 10 38 38 H 1.08999 * 109.47092 * 180.02562 * 14 12 10 39 39 H 0.97000 * 119.99925 * 25.00312 * 15 12 10 40 40 H 0.96997 * 119.99947 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.58469 * 246.20065 * 24 6 4 42 42 H 1.08998 * 109.58115 * 6.62946 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8639 2.7909 0.0011 7 6 2.9817 3.9658 0.0006 8 6 3.3750 4.8772 -1.1663 9 6 4.8655 5.2104 -1.0681 10 6 5.6853 3.9217 -1.1641 11 1 5.4662 3.4205 -2.1070 12 6 7.1763 4.2589 -1.0989 13 1 7.3947 4.7588 -0.1553 14 6 7.5415 5.1833 -2.2621 15 7 7.9606 3.0250 -1.1915 16 6 9.2229 2.9749 -0.6631 17 1 9.6401 3.8448 -0.1778 18 6 9.9659 1.8055 -0.7504 19 7 9.4571 0.7452 -1.3414 20 14 11.6881 1.7372 -0.0302 21 1 11.6265 2.0152 1.4272 22 1 12.2647 0.3871 -0.2532 23 1 12.5424 2.7553 -0.6927 24 6 5.3182 2.9995 0.0078 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.9466 3.6455 -0.1187 31 1 3.0929 4.5067 0.9404 32 1 3.1775 4.3670 -2.1090 33 1 2.7923 5.7973 -1.1216 34 1 5.1426 5.8788 -1.8833 35 1 5.0665 5.6982 -0.1143 36 1 7.3230 4.6834 -3.2058 37 1 6.9579 6.1013 -2.1937 38 1 8.6037 5.4231 -2.2159 39 1 7.5857 2.2436 -1.6271 40 1 9.9764 -0.0718 -1.4027 41 1 5.6165 3.4630 0.9481 42 1 5.8252 2.0414 -0.1068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495488554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:15 Heat of formation + Delta-G solvation = -102.644177 kcal Electronic energy + Delta-G solvation = -21761.415598 eV Core-core repulsion = 18547.523543 eV Total energy + Delta-G solvation = -3213.892055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.74797 -39.77353 -37.64194 -36.97278 -34.68074 -33.25218 -32.45926 -31.38194 -29.80520 -26.69877 -25.90624 -24.53823 -23.83222 -22.57882 -21.39747 -20.83471 -19.22859 -18.91145 -18.02078 -17.71859 -16.75188 -16.01367 -15.88315 -15.49744 -15.39313 -15.30760 -14.84584 -14.35996 -14.19676 -14.03440 -13.87659 -13.60654 -13.39266 -13.01561 -12.90832 -12.74011 -12.57767 -12.48753 -12.36641 -12.17273 -12.05606 -11.88590 -11.69793 -11.59079 -11.54874 -11.29813 -11.13531 -10.91256 -9.76062 -8.97262 -7.89884 -5.18489 1.07449 1.46240 1.49896 1.55732 1.68539 2.58244 2.87610 3.43527 3.72239 3.84353 3.94956 4.00687 4.09727 4.12602 4.15819 4.30508 4.35281 4.44636 4.60728 4.64236 4.69507 4.79367 4.87679 4.91687 4.93412 4.94886 5.04275 5.07440 5.11414 5.17702 5.29377 5.35692 5.42438 5.47710 5.51433 5.57736 5.65869 6.28659 6.31120 7.19291 7.36324 8.14521 8.36010 9.33644 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.005102 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.037826 B = 5486.498724 C = 6670.365049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 O -0.363 6.363 4 C 0.638 3.362 5 O -0.617 6.617 6 N -0.589 5.589 7 C 0.106 3.894 8 C -0.126 4.126 9 C -0.109 4.109 10 C -0.091 4.091 11 H 0.050 0.950 12 C 0.173 3.827 13 H 0.052 0.948 14 C -0.154 4.154 15 N -0.738 5.738 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.970 3.030 21 H -0.278 1.278 22 H -0.300 1.300 23 H -0.276 1.276 24 C 0.144 3.856 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.367 0.633 40 H 0.247 0.753 41 H 0.075 0.925 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.633 9.583 2.398 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.005 4.005 3 O -0.277 6.277 4 C 0.392 3.608 5 O -0.508 6.508 6 N -0.329 5.329 7 C -0.015 4.015 8 C -0.164 4.164 9 C -0.147 4.147 10 C -0.111 4.111 11 H 0.069 0.931 12 C 0.064 3.936 13 H 0.070 0.930 14 C -0.213 4.213 15 N -0.378 5.378 16 C -0.366 4.366 17 H 0.097 0.903 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.227 1.227 23 H -0.202 1.202 24 C 0.022 3.978 25 H 0.091 0.909 26 H 0.120 0.880 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.199 0.801 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.340 9.309 2.504 22.509 hybrid contribution 1.408 -1.290 -0.001 1.910 sum -18.932 8.020 2.502 20.712 Atomic orbital electron populations 1.21812 0.89182 1.04578 1.04001 1.23245 0.97144 0.77996 1.02095 1.86209 1.20392 1.34233 1.86899 1.18347 0.81628 0.84410 0.76369 1.91027 1.60916 1.41181 1.57716 1.47164 1.07713 1.03302 1.74677 1.22072 0.93887 0.85038 1.00506 1.21920 0.96367 1.00522 0.97590 1.21639 0.94061 0.95064 1.03913 1.21716 0.95370 0.97225 0.96777 0.93117 1.20480 0.88870 0.87153 0.97061 0.93031 1.22322 1.00632 0.99718 0.98658 1.42700 1.14878 1.11224 1.69010 1.19608 0.92099 0.96856 1.28050 0.90291 1.25562 1.02557 0.96054 1.02987 1.69852 1.38814 1.02833 1.50926 0.85250 0.80273 0.76111 0.78388 1.20384 1.22709 1.20202 1.21557 0.76705 1.00367 0.99147 0.90924 0.87960 0.90765 0.92002 0.92307 0.88180 0.89279 0.92559 0.86906 0.89612 0.90142 0.94601 0.89902 0.94652 0.80145 0.94384 0.90651 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.29 71.98 0.74 -1.16 16 2 C 0.07 1.63 6.19 71.98 0.45 2.08 16 3 O -0.36 -10.26 8.86 -55.49 -0.49 -10.75 16 4 C 0.64 23.06 8.43 129.79 1.09 24.15 16 5 O -0.62 -28.60 15.54 19.80 0.31 -28.29 16 6 N -0.59 -18.33 2.97 -948.48 -2.81 -21.15 16 7 C 0.11 2.11 6.44 86.36 0.56 2.67 16 8 C -0.13 -2.17 6.08 30.67 0.19 -1.98 16 9 C -0.11 -2.30 4.85 30.62 0.15 -2.15 16 10 C -0.09 -2.93 1.98 -10.58 -0.02 -2.95 16 11 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 12 C 0.17 6.62 2.47 44.99 0.11 6.73 16 13 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 14 C -0.15 -5.20 9.14 71.98 0.66 -4.54 16 15 N -0.74 -38.17 4.52 -322.94 -1.46 -39.63 16 16 C -0.23 -13.26 9.93 84.03 0.83 -12.43 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 19 N -0.97 -63.06 13.06 21.65 0.28 -62.77 16 20 Si 0.97 47.83 29.55 68.60 2.03 49.86 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 C 0.14 5.23 5.50 86.49 0.48 5.70 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.10 1.77 6.93 -2.39 -0.02 1.76 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.61 6.36 -2.39 -0.02 1.59 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 2.08 6.40 -2.39 -0.02 2.07 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.37 21.27 7.64 -92.71 -0.71 20.56 16 40 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.05 2.63 6.54 -2.39 -0.02 2.61 16 Total: -1.00 -76.35 336.55 3.83 -72.51 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.28 Total: 28.39 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 5.70 Total: 11.83 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -3.99 Total: -123.55 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.18 Total: -39.04 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -76.35 3.83 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495488554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.130 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds