Wall clock time and date at job start Mon Mar 30 2020 00:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47433 * 2 1 4 4 C 1.34772 * 119.99985 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00320 * 359.97438 * 4 3 2 6 6 O 1.34640 * 119.99580 * 179.97438 * 4 3 2 7 7 C 1.45209 * 116.99699 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46802 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.45313 * 183.27448 * 8 7 6 10 10 C 1.53039 * 109.46508 * 303.24636 * 8 7 6 11 11 C 1.53113 * 109.27910 * 179.19478 * 10 8 7 12 12 C 1.53115 * 109.16388 * 302.34781 * 11 10 8 13 13 C 1.53034 * 109.27932 * 57.65191 * 12 11 10 14 14 N 1.46847 * 109.46234 * 63.30042 * 8 7 6 15 15 C 1.46903 * 110.99931 * 54.14393 * 14 8 7 16 16 C 1.50704 * 109.47137 * 63.77559 * 15 14 8 17 17 H 1.08002 * 120.00059 * 354.57364 * 16 15 14 18 18 C 1.37873 * 119.99964 * 174.58434 * 16 15 14 19 19 N 1.31519 * 119.99829 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47293 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46949 * 299.99923 * 20 18 16 23 23 H 1.48504 * 109.47110 * 59.99216 * 20 18 16 24 24 H 1.08993 * 109.47322 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46910 * 300.00171 * 1 2 3 26 26 H 1.08999 * 109.46958 * 59.99976 * 1 2 3 27 27 H 1.08998 * 109.47189 * 239.99432 * 2 1 3 28 28 H 1.08998 * 109.47435 * 119.99794 * 2 1 3 29 29 H 0.97002 * 119.99675 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46670 * 59.99758 * 7 6 4 31 31 H 1.08995 * 109.46901 * 299.99314 * 7 6 4 32 32 H 1.08997 * 109.50023 * 299.14238 * 10 8 7 33 33 H 1.09006 * 109.49872 * 59.21465 * 10 8 7 34 34 H 1.09005 * 109.51827 * 62.25349 * 11 10 8 35 35 H 1.08998 * 109.52267 * 182.43645 * 11 10 8 36 36 H 1.08998 * 109.50168 * 177.59199 * 12 11 10 37 37 H 1.08998 * 109.50254 * 297.71341 * 12 11 10 38 38 H 1.08993 * 109.46304 * 180.80301 * 13 12 11 39 39 H 1.08998 * 109.46143 * 60.83868 * 13 12 11 40 40 H 1.08999 * 109.47170 * 303.76948 * 15 14 8 41 41 H 1.08999 * 109.46763 * 183.77341 * 15 14 8 42 42 H 0.97001 * 119.99536 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1330 0.7039 -0.0005 6 8 3.7922 2.8968 -0.0010 7 6 5.2318 3.0870 -0.0010 8 6 5.5484 4.5839 -0.0023 9 1 6.6274 4.7267 -0.0610 10 6 4.8801 5.2455 -1.2097 11 6 5.1829 6.7463 -1.1957 12 6 4.6877 7.3467 0.1228 13 6 5.3615 6.6243 1.2916 14 7 5.0408 5.1924 1.2340 15 6 5.5559 4.4896 2.4167 16 6 7.0544 4.6382 2.4764 17 1 7.5816 5.1227 1.6678 18 6 7.7523 4.1556 3.5631 19 7 7.1102 3.5659 4.5478 20 14 9.6098 4.3392 3.6368 21 1 10.1164 3.7430 4.8989 22 1 10.2225 3.6411 2.4781 23 1 9.9670 5.7799 3.5919 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3880 2.1185 0.0004 30 1 5.6593 2.6248 -0.8908 31 1 5.6592 2.6257 0.8892 32 1 5.2685 4.8043 -2.1276 33 1 3.8023 5.0906 -1.1592 34 1 6.2580 6.9018 -1.2857 35 1 4.6732 7.2285 -2.0298 36 1 4.9387 8.4069 0.1569 37 1 3.6068 7.2255 0.1946 38 1 5.0002 7.0399 2.2322 39 1 6.4413 6.7575 1.2269 40 1 5.2978 3.4326 2.3523 41 1 5.1122 4.9177 3.3156 42 1 7.6012 3.2267 5.3125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495679384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:55 Heat of formation + Delta-G solvation = -91.444619 kcal Electronic energy + Delta-G solvation = -21905.993853 eV Core-core repulsion = 18692.587448 eV Total energy + Delta-G solvation = -3213.406405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02892 -38.51992 -36.35020 -34.92898 -33.65594 -31.87912 -31.31543 -30.31002 -26.92399 -25.95493 -23.74359 -23.24930 -21.74241 -21.09533 -20.47818 -18.99604 -18.23632 -16.54015 -16.25920 -16.06548 -15.21426 -14.94672 -14.76449 -14.30358 -14.19033 -13.88102 -13.29575 -13.15339 -12.85758 -12.53401 -12.41953 -12.19633 -11.94576 -11.71318 -11.51685 -11.26525 -11.08564 -10.95517 -10.58321 -10.53845 -10.38305 -10.21239 -10.15713 -9.89786 -9.78262 -9.67900 -9.25961 -9.03154 -8.40574 -7.13498 -6.01690 -4.12278 2.56899 3.24762 3.28831 3.34328 3.35940 4.40635 4.55265 4.86623 4.91517 4.97129 5.21338 5.26978 5.28291 5.31938 5.42325 5.64624 5.76759 5.79099 5.80265 5.84892 5.91513 6.04486 6.13655 6.29159 6.32720 6.37914 6.43131 6.48668 6.52820 6.70338 6.76837 6.91929 6.96474 7.29565 7.54419 7.65810 7.91338 8.07631 8.29765 8.31554 8.73010 8.98516 9.55160 11.02686 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.005983 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.207154 B = 4678.653858 C = 5921.140316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.133 3.867 3 N -0.716 5.716 4 C 0.643 3.357 5 O -0.579 6.579 6 O -0.348 6.348 7 C 0.096 3.904 8 C 0.094 3.906 9 H 0.066 0.934 10 C -0.111 4.111 11 C -0.117 4.117 12 C -0.117 4.117 13 C 0.065 3.935 14 N -0.529 5.529 15 C 0.183 3.817 16 C -0.553 4.553 17 H 0.056 0.944 18 C 0.067 3.933 19 N -0.888 5.888 20 Si 0.887 3.113 21 H -0.286 1.286 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.405 0.595 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -0.201 -10.907 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.378 5.378 4 C 0.396 3.604 5 O -0.469 6.469 6 O -0.261 6.261 7 C 0.022 3.978 8 C -0.015 4.015 9 H 0.083 0.917 10 C -0.148 4.148 11 C -0.155 4.155 12 C -0.155 4.155 13 C -0.063 4.063 14 N -0.254 5.254 15 C 0.058 3.942 16 C -0.592 4.592 17 H 0.074 0.926 18 C -0.136 4.136 19 N -0.526 5.526 20 Si 0.715 3.285 21 H -0.212 1.212 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.240 0.760 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.071 -0.759 -10.718 15.428 hybrid contribution 1.881 0.352 0.268 1.933 sum -9.190 -0.406 -10.449 13.922 Atomic orbital electron populations 1.22009 0.94211 1.03189 1.02773 1.21223 0.93931 0.81241 1.02597 1.44636 1.04217 1.09331 1.79566 1.18285 0.83516 0.82575 0.75988 1.90974 1.55210 1.45009 1.55664 1.86304 1.28336 1.25612 1.85855 1.23248 0.74673 0.97105 1.02788 1.21542 0.97590 0.90642 0.91707 0.91685 1.21596 1.01850 0.94861 0.96540 1.21536 1.00506 0.95999 0.97427 1.21631 1.00819 0.98110 0.94933 1.21837 0.98173 0.89241 0.97074 1.62461 1.58560 1.01933 1.02406 1.19835 0.92835 0.94293 0.87284 1.21703 0.93607 1.38961 1.04975 0.92633 1.24950 0.98223 0.94870 0.95528 1.69936 1.35788 1.38363 1.08558 0.86734 0.85988 0.78346 0.77435 1.21191 1.20217 1.20286 0.90630 0.91690 0.91903 0.91540 0.91318 0.76018 0.92191 0.89151 0.92744 0.90905 0.92648 0.92776 0.92721 0.91835 0.91662 0.94450 0.95087 0.94744 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 10.03 37.16 0.37 -0.80 16 2 C 0.13 1.45 6.39 -4.04 -0.03 1.42 16 3 N -0.72 -9.58 5.56 -65.28 -0.36 -9.94 16 4 C 0.64 11.70 8.75 54.05 0.47 12.17 16 5 O -0.58 -12.43 16.13 -19.28 -0.31 -12.74 16 6 O -0.35 -6.53 9.38 -40.33 -0.38 -6.91 16 7 C 0.10 1.91 4.66 37.16 0.17 2.08 16 8 C 0.09 1.81 1.87 -67.72 -0.13 1.68 16 9 H 0.07 1.34 6.79 -51.93 -0.35 0.99 16 10 C -0.11 -1.73 5.21 -26.65 -0.14 -1.87 16 11 C -0.12 -1.68 6.00 -26.61 -0.16 -1.84 16 12 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 13 C 0.07 1.26 5.05 -3.83 -0.02 1.24 16 14 N -0.53 -11.20 4.62 -228.12 -1.05 -12.26 16 15 C 0.18 4.69 4.70 -4.97 -0.02 4.67 16 16 C -0.55 -15.00 7.71 -34.44 -0.27 -15.27 16 17 H 0.06 1.48 5.86 -52.49 -0.31 1.17 16 18 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 19 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.41 4.43 8.58 -40.82 -0.35 4.08 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 2.11 6.05 -51.93 -0.31 1.80 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.16 7.57 -51.93 -0.39 0.77 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 39 H 0.04 0.78 6.80 -51.93 -0.35 0.43 16 40 H 0.03 0.86 5.92 -51.93 -0.31 0.56 16 41 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 333.45 15.07 5.03 5.03 Total: -1.00 -31.63 333.45 -8.37 -40.00 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.01 Total: 2.58 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 0.00 Total: 3.34 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.68 Total: -47.75 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.69 Total: -19.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.63 -8.37 -40.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495679384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.444 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds