Wall clock time and date at job start Mon Mar 30 2020 00:59:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 N 1.46503 * 109.47433 * 2 1
4 4 C 1.34772 * 119.99985 * 180.02562 * 3 2 1
5 5 O 1.21506 * 120.00320 * 359.97438 * 4 3 2
6 6 O 1.34640 * 119.99580 * 179.97438 * 4 3 2
7 7 C 1.45209 * 116.99699 * 179.97438 * 6 4 3
8 8 C 1.53002 * 109.46802 * 179.97438 * 7 6 4
9 9 H 1.09002 * 109.45313 * 183.27448 * 8 7 6
10 10 C 1.53039 * 109.46508 * 303.24636 * 8 7 6
11 11 C 1.53113 * 109.27910 * 179.19478 * 10 8 7
12 12 C 1.53115 * 109.16388 * 302.34781 * 11 10 8
13 13 C 1.53034 * 109.27932 * 57.65191 * 12 11 10
14 14 N 1.46847 * 109.46234 * 63.30042 * 8 7 6
15 15 C 1.46903 * 110.99931 * 54.14393 * 14 8 7
16 16 C 1.50704 * 109.47137 * 63.77559 * 15 14 8
17 17 H 1.08002 * 120.00059 * 354.57364 * 16 15 14
18 18 C 1.37873 * 119.99964 * 174.58434 * 16 15 14
19 19 N 1.31519 * 119.99829 * 359.97438 * 18 16 15
20 20 Si 1.86797 * 120.00215 * 179.97438 * 18 16 15
21 21 H 1.48493 * 109.47293 * 179.97438 * 20 18 16
22 22 H 1.48498 * 109.46949 * 299.99923 * 20 18 16
23 23 H 1.48504 * 109.47110 * 59.99216 * 20 18 16
24 24 H 1.08993 * 109.47322 * 180.02562 * 1 2 3
25 25 H 1.09003 * 109.46910 * 300.00171 * 1 2 3
26 26 H 1.08999 * 109.46958 * 59.99976 * 1 2 3
27 27 H 1.08998 * 109.47189 * 239.99432 * 2 1 3
28 28 H 1.08998 * 109.47435 * 119.99794 * 2 1 3
29 29 H 0.97002 * 119.99675 * 0.02562 * 3 2 1
30 30 H 1.09002 * 109.46670 * 59.99758 * 7 6 4
31 31 H 1.08995 * 109.46901 * 299.99314 * 7 6 4
32 32 H 1.08997 * 109.50023 * 299.14238 * 10 8 7
33 33 H 1.09006 * 109.49872 * 59.21465 * 10 8 7
34 34 H 1.09005 * 109.51827 * 62.25349 * 11 10 8
35 35 H 1.08998 * 109.52267 * 182.43645 * 11 10 8
36 36 H 1.08998 * 109.50168 * 177.59199 * 12 11 10
37 37 H 1.08998 * 109.50254 * 297.71341 * 12 11 10
38 38 H 1.08993 * 109.46304 * 180.80301 * 13 12 11
39 39 H 1.08998 * 109.46143 * 60.83868 * 13 12 11
40 40 H 1.08999 * 109.47170 * 303.76948 * 15 14 8
41 41 H 1.08999 * 109.46763 * 183.77341 * 15 14 8
42 42 H 0.97001 * 119.99536 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 3.3434 1.6274 -0.0005
5 8 4.1330 0.7039 -0.0005
6 8 3.7922 2.8968 -0.0010
7 6 5.2318 3.0870 -0.0010
8 6 5.5484 4.5839 -0.0023
9 1 6.6274 4.7267 -0.0610
10 6 4.8801 5.2455 -1.2097
11 6 5.1829 6.7463 -1.1957
12 6 4.6877 7.3467 0.1228
13 6 5.3615 6.6243 1.2916
14 7 5.0408 5.1924 1.2340
15 6 5.5559 4.4896 2.4167
16 6 7.0544 4.6382 2.4764
17 1 7.5816 5.1227 1.6678
18 6 7.7523 4.1556 3.5631
19 7 7.1102 3.5659 4.5478
20 14 9.6098 4.3392 3.6368
21 1 10.1164 3.7430 4.8989
22 1 10.2225 3.6411 2.4781
23 1 9.9670 5.7799 3.5919
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5138 -0.8900
27 1 1.8933 -0.5139 -0.8899
28 1 1.8933 -0.5138 0.8900
29 1 1.3880 2.1185 0.0004
30 1 5.6593 2.6248 -0.8908
31 1 5.6592 2.6257 0.8892
32 1 5.2685 4.8043 -2.1276
33 1 3.8023 5.0906 -1.1592
34 1 6.2580 6.9018 -1.2857
35 1 4.6732 7.2285 -2.0298
36 1 4.9387 8.4069 0.1569
37 1 3.6068 7.2255 0.1946
38 1 5.0002 7.0399 2.2322
39 1 6.4413 6.7575 1.2269
40 1 5.2978 3.4326 2.3523
41 1 5.1122 4.9177 3.3156
42 1 7.6012 3.2267 5.3125
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000495679384.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:59:55
Heat of formation + Delta-G solvation = -114.575282 kcal
Electronic energy + Delta-G solvation = -21906.996874 eV
Core-core repulsion = 18692.587448 eV
Total energy + Delta-G solvation = -3214.409426 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 270.173 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.50509 -40.05752 -37.70120 -36.26679 -35.48357 -33.68409 -32.79269 -31.29970
-28.80375 -27.53084 -25.53281 -24.25145 -23.32372 -22.47639 -21.93546 -20.54881
-19.64469 -18.41565 -17.80464 -17.61692 -16.89721 -16.35585 -16.02048 -15.93271
-15.46687 -15.23193 -14.91764 -14.63608 -14.29555 -14.19460 -13.64070 -13.39759
-13.25955 -13.03782 -12.88668 -12.69752 -12.63844 -12.41560 -12.38449 -12.12425
-12.02109 -11.85609 -11.75905 -11.63832 -11.39368 -11.16465 -10.85932 -10.57751
-10.22261 -8.98024 -8.15310 -6.36859 1.24376 1.34788 1.36551 1.44256
1.78292 2.35368 3.08242 3.24290 3.32446 3.86808 3.93419 4.10257
4.14984 4.22394 4.30057 4.38599 4.42147 4.52262 4.57014 4.72362
4.81137 4.89582 4.97217 5.05630 5.06884 5.11223 5.19286 5.23938
5.30166 5.31688 5.34201 5.36998 5.39385 5.55418 5.59878 5.74616
6.04711 6.27667 6.41172 6.58261 6.85584 7.34161 7.35400 8.85768
Molecular weight = 270.17amu
Principal moments of inertia in cm(-1)
A = 0.014920 B = 0.005983 C = 0.004728
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1876.207154 B = 4678.653858 C = 5921.140316
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.126 3.874
3 N -0.695 5.695
4 C 0.633 3.367
5 O -0.618 6.618
6 O -0.347 6.347
7 C 0.103 3.897
8 C 0.095 3.905
9 H 0.050 0.950
10 C -0.102 4.102
11 C -0.113 4.113
12 C -0.107 4.107
13 C 0.063 3.937
14 N -0.528 5.528
15 C 0.200 3.800
16 C -0.556 4.556
17 H 0.059 0.941
18 C 0.012 3.988
19 N -0.927 5.927
20 Si 0.955 3.045
21 H -0.284 1.284
22 H -0.270 1.270
23 H -0.266 1.266
24 H 0.094 0.906
25 H 0.068 0.932
26 H 0.076 0.924
27 H 0.066 0.934
28 H 0.053 0.947
29 H 0.419 0.581
30 H 0.075 0.925
31 H 0.044 0.956
32 H 0.076 0.924
33 H 0.073 0.927
34 H 0.055 0.945
35 H 0.088 0.912
36 H 0.079 0.921
37 H 0.068 0.932
38 H 0.051 0.949
39 H 0.020 0.980
40 H 0.002 0.998
41 H 0.001 0.999
42 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.788 0.994 -13.079 17.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.004 3.996
3 N -0.357 5.357
4 C 0.387 3.613
5 O -0.511 6.511
6 O -0.259 6.259
7 C 0.028 3.972
8 C -0.014 4.014
9 H 0.067 0.933
10 C -0.140 4.140
11 C -0.151 4.151
12 C -0.145 4.145
13 C -0.065 4.065
14 N -0.252 5.252
15 C 0.073 3.927
16 C -0.594 4.594
17 H 0.077 0.923
18 C -0.188 4.188
19 N -0.567 5.567
20 Si 0.780 3.220
21 H -0.209 1.209
22 H -0.195 1.195
23 H -0.191 1.191
24 H 0.112 0.888
25 H 0.087 0.913
26 H 0.095 0.905
27 H 0.084 0.916
28 H 0.071 0.929
29 H 0.256 0.744
30 H 0.093 0.907
31 H 0.062 0.938
32 H 0.095 0.905
33 H 0.092 0.908
34 H 0.074 0.926
35 H 0.107 0.893
36 H 0.098 0.902
37 H 0.087 0.913
38 H 0.070 0.930
39 H 0.038 0.962
40 H 0.020 0.980
41 H 0.019 0.981
42 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -11.856 0.463 -12.912 17.536
hybrid contribution 2.021 -0.065 0.946 2.233
sum -9.834 0.398 -11.966 15.494
Atomic orbital electron populations
1.21969 0.90679 1.04714 1.03628 1.21490 0.96671 0.79582 1.01871
1.44753 1.02485 1.11049 1.77424 1.18667 0.84805 0.81850 0.76021
1.90942 1.56593 1.45843 1.57717 1.86288 1.27492 1.26166 1.85990
1.23035 0.75392 0.97532 1.01242 1.21625 0.97121 0.90419 0.92262
0.93253 1.21566 1.01448 0.95847 0.95128 1.21550 1.00953 0.94787
0.97802 1.21579 1.00586 0.98919 0.93438 1.21925 0.97568 0.88230
0.98805 1.62400 1.58254 1.02859 1.01687 1.19416 0.92271 0.92833
0.88141 1.21950 0.94366 1.38251 1.04881 0.92283 1.25830 1.03166
0.94570 0.95216 1.70075 1.37717 1.39610 1.09291 0.85656 0.80050
0.78793 0.77534 1.20898 1.19525 1.19109 0.88751 0.91332 0.90484
0.91568 0.92855 0.74365 0.90658 0.93751 0.90513 0.90800 0.92641
0.89344 0.90246 0.91306 0.93038 0.96220 0.98007 0.98086 0.92705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.80 10.03 71.98 0.72 -1.08 16
2 C 0.13 2.64 6.39 86.38 0.55 3.19 16
3 N -0.70 -18.16 5.56 -590.86 -3.29 -21.45 16
4 C 0.63 23.42 8.75 129.79 1.14 24.56 16
5 O -0.62 -27.48 16.13 19.82 0.32 -27.16 16
6 O -0.35 -13.18 9.38 -55.50 -0.52 -13.70 16
7 C 0.10 4.20 4.66 71.98 0.34 4.54 16
8 C 0.09 3.63 1.87 44.94 0.08 3.72 16
9 H 0.05 2.06 6.79 -2.39 -0.02 2.04 16
10 C -0.10 -2.94 5.21 30.64 0.16 -2.78 16
11 C -0.11 -2.84 6.00 30.67 0.18 -2.66 16
12 C -0.11 -3.01 6.09 30.64 0.19 -2.82 16
13 C 0.06 2.43 5.05 86.32 0.44 2.86 16
14 N -0.53 -22.83 4.62 -875.64 -4.05 -26.88 16
15 C 0.20 10.82 4.70 85.56 0.40 11.22 16
16 C -0.56 -31.13 7.71 25.60 0.20 -30.93 16
17 H 0.06 3.21 5.86 -2.91 -0.02 3.19 16
18 C 0.01 0.67 5.46 84.65 0.46 1.13 16
19 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16
20 Si 0.95 44.72 29.54 68.60 2.03 46.74 16
21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
25 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16
26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16
28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16
29 H 0.42 8.54 8.58 -92.71 -0.80 7.75 16
30 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16
31 H 0.04 2.22 6.05 -2.39 -0.01 2.20 16
32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
33 H 0.07 2.14 7.57 -2.38 -0.02 2.13 16
34 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16
35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16
36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
38 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16
39 H 0.02 0.82 6.80 -2.39 -0.02 0.80 16
40 H 0.00 0.12 5.92 -2.39 -0.01 0.10 16
41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16
42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16
Total: -1.00 -71.83 333.45 -0.16 -71.99
By element:
Atomic # 1 Polarization: 15.92 SS G_CDS: 0.21 Total: 16.13 kcal
Atomic # 6 Polarization: 6.10 SS G_CDS: 4.86 Total: 10.95 kcal
Atomic # 7 Polarization: -97.91 SS G_CDS: -7.05 Total: -104.95 kcal
Atomic # 8 Polarization: -40.66 SS G_CDS: -0.20 Total: -40.86 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal
Total: -71.83 -0.16 -71.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000495679384.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.584 kcal
(2) G-P(sol) polarization free energy of solvation -71.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.415 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.575 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds