Wall clock time and date at job start Mon Mar 30 2020 00:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47433 * 2 1 4 4 C 1.34772 * 119.99985 * 180.02562 * 3 2 1 5 5 O 1.21506 * 120.00320 * 359.97438 * 4 3 2 6 6 O 1.34640 * 119.99580 * 179.97438 * 4 3 2 7 7 C 1.45209 * 116.99699 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46802 * 179.97438 * 7 6 4 9 9 H 1.09002 * 109.45313 * 183.27448 * 8 7 6 10 10 C 1.53039 * 109.46508 * 303.24636 * 8 7 6 11 11 C 1.53113 * 109.27910 * 179.19478 * 10 8 7 12 12 C 1.53115 * 109.16388 * 302.34781 * 11 10 8 13 13 C 1.53034 * 109.27932 * 57.65191 * 12 11 10 14 14 N 1.46847 * 109.46234 * 63.30042 * 8 7 6 15 15 C 1.46903 * 110.99931 * 54.14393 * 14 8 7 16 16 C 1.50704 * 109.47137 * 63.77559 * 15 14 8 17 17 H 1.08002 * 120.00059 * 354.57364 * 16 15 14 18 18 C 1.37873 * 119.99964 * 174.58434 * 16 15 14 19 19 N 1.31519 * 119.99829 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47293 * 179.97438 * 20 18 16 22 22 H 1.48498 * 109.46949 * 299.99923 * 20 18 16 23 23 H 1.48504 * 109.47110 * 59.99216 * 20 18 16 24 24 H 1.08993 * 109.47322 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46910 * 300.00171 * 1 2 3 26 26 H 1.08999 * 109.46958 * 59.99976 * 1 2 3 27 27 H 1.08998 * 109.47189 * 239.99432 * 2 1 3 28 28 H 1.08998 * 109.47435 * 119.99794 * 2 1 3 29 29 H 0.97002 * 119.99675 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.46670 * 59.99758 * 7 6 4 31 31 H 1.08995 * 109.46901 * 299.99314 * 7 6 4 32 32 H 1.08997 * 109.50023 * 299.14238 * 10 8 7 33 33 H 1.09006 * 109.49872 * 59.21465 * 10 8 7 34 34 H 1.09005 * 109.51827 * 62.25349 * 11 10 8 35 35 H 1.08998 * 109.52267 * 182.43645 * 11 10 8 36 36 H 1.08998 * 109.50168 * 177.59199 * 12 11 10 37 37 H 1.08998 * 109.50254 * 297.71341 * 12 11 10 38 38 H 1.08993 * 109.46304 * 180.80301 * 13 12 11 39 39 H 1.08998 * 109.46143 * 60.83868 * 13 12 11 40 40 H 1.08999 * 109.47170 * 303.76948 * 15 14 8 41 41 H 1.08999 * 109.46763 * 183.77341 * 15 14 8 42 42 H 0.97001 * 119.99536 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1330 0.7039 -0.0005 6 8 3.7922 2.8968 -0.0010 7 6 5.2318 3.0870 -0.0010 8 6 5.5484 4.5839 -0.0023 9 1 6.6274 4.7267 -0.0610 10 6 4.8801 5.2455 -1.2097 11 6 5.1829 6.7463 -1.1957 12 6 4.6877 7.3467 0.1228 13 6 5.3615 6.6243 1.2916 14 7 5.0408 5.1924 1.2340 15 6 5.5559 4.4896 2.4167 16 6 7.0544 4.6382 2.4764 17 1 7.5816 5.1227 1.6678 18 6 7.7523 4.1556 3.5631 19 7 7.1102 3.5659 4.5478 20 14 9.6098 4.3392 3.6368 21 1 10.1164 3.7430 4.8989 22 1 10.2225 3.6411 2.4781 23 1 9.9670 5.7799 3.5919 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3880 2.1185 0.0004 30 1 5.6593 2.6248 -0.8908 31 1 5.6592 2.6257 0.8892 32 1 5.2685 4.8043 -2.1276 33 1 3.8023 5.0906 -1.1592 34 1 6.2580 6.9018 -1.2857 35 1 4.6732 7.2285 -2.0298 36 1 4.9387 8.4069 0.1569 37 1 3.6068 7.2255 0.1946 38 1 5.0002 7.0399 2.2322 39 1 6.4413 6.7575 1.2269 40 1 5.2978 3.4326 2.3523 41 1 5.1122 4.9177 3.3156 42 1 7.6012 3.2267 5.3125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495679384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:55 Heat of formation + Delta-G solvation = -114.575282 kcal Electronic energy + Delta-G solvation = -21906.996874 eV Core-core repulsion = 18692.587448 eV Total energy + Delta-G solvation = -3214.409426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50509 -40.05752 -37.70120 -36.26679 -35.48357 -33.68409 -32.79269 -31.29970 -28.80375 -27.53084 -25.53281 -24.25145 -23.32372 -22.47639 -21.93546 -20.54881 -19.64469 -18.41565 -17.80464 -17.61692 -16.89721 -16.35585 -16.02048 -15.93271 -15.46687 -15.23193 -14.91764 -14.63608 -14.29555 -14.19460 -13.64070 -13.39759 -13.25955 -13.03782 -12.88668 -12.69752 -12.63844 -12.41560 -12.38449 -12.12425 -12.02109 -11.85609 -11.75905 -11.63832 -11.39368 -11.16465 -10.85932 -10.57751 -10.22261 -8.98024 -8.15310 -6.36859 1.24376 1.34788 1.36551 1.44256 1.78292 2.35368 3.08242 3.24290 3.32446 3.86808 3.93419 4.10257 4.14984 4.22394 4.30057 4.38599 4.42147 4.52262 4.57014 4.72362 4.81137 4.89582 4.97217 5.05630 5.06884 5.11223 5.19286 5.23938 5.30166 5.31688 5.34201 5.36998 5.39385 5.55418 5.59878 5.74616 6.04711 6.27667 6.41172 6.58261 6.85584 7.34161 7.35400 8.85768 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.014920 B = 0.005983 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.207154 B = 4678.653858 C = 5921.140316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 N -0.695 5.695 4 C 0.633 3.367 5 O -0.618 6.618 6 O -0.347 6.347 7 C 0.103 3.897 8 C 0.095 3.905 9 H 0.050 0.950 10 C -0.102 4.102 11 C -0.113 4.113 12 C -0.107 4.107 13 C 0.063 3.937 14 N -0.528 5.528 15 C 0.200 3.800 16 C -0.556 4.556 17 H 0.059 0.941 18 C 0.012 3.988 19 N -0.927 5.927 20 Si 0.955 3.045 21 H -0.284 1.284 22 H -0.270 1.270 23 H -0.266 1.266 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.419 0.581 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.020 0.980 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 0.994 -13.079 17.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.004 3.996 3 N -0.357 5.357 4 C 0.387 3.613 5 O -0.511 6.511 6 O -0.259 6.259 7 C 0.028 3.972 8 C -0.014 4.014 9 H 0.067 0.933 10 C -0.140 4.140 11 C -0.151 4.151 12 C -0.145 4.145 13 C -0.065 4.065 14 N -0.252 5.252 15 C 0.073 3.927 16 C -0.594 4.594 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.567 5.567 20 Si 0.780 3.220 21 H -0.209 1.209 22 H -0.195 1.195 23 H -0.191 1.191 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.256 0.744 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.038 0.962 40 H 0.020 0.980 41 H 0.019 0.981 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.856 0.463 -12.912 17.536 hybrid contribution 2.021 -0.065 0.946 2.233 sum -9.834 0.398 -11.966 15.494 Atomic orbital electron populations 1.21969 0.90679 1.04714 1.03628 1.21490 0.96671 0.79582 1.01871 1.44753 1.02485 1.11049 1.77424 1.18667 0.84805 0.81850 0.76021 1.90942 1.56593 1.45843 1.57717 1.86288 1.27492 1.26166 1.85990 1.23035 0.75392 0.97532 1.01242 1.21625 0.97121 0.90419 0.92262 0.93253 1.21566 1.01448 0.95847 0.95128 1.21550 1.00953 0.94787 0.97802 1.21579 1.00586 0.98919 0.93438 1.21925 0.97568 0.88230 0.98805 1.62400 1.58254 1.02859 1.01687 1.19416 0.92271 0.92833 0.88141 1.21950 0.94366 1.38251 1.04881 0.92283 1.25830 1.03166 0.94570 0.95216 1.70075 1.37717 1.39610 1.09291 0.85656 0.80050 0.78793 0.77534 1.20898 1.19525 1.19109 0.88751 0.91332 0.90484 0.91568 0.92855 0.74365 0.90658 0.93751 0.90513 0.90800 0.92641 0.89344 0.90246 0.91306 0.93038 0.96220 0.98007 0.98086 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.03 71.98 0.72 -1.08 16 2 C 0.13 2.64 6.39 86.38 0.55 3.19 16 3 N -0.70 -18.16 5.56 -590.86 -3.29 -21.45 16 4 C 0.63 23.42 8.75 129.79 1.14 24.56 16 5 O -0.62 -27.48 16.13 19.82 0.32 -27.16 16 6 O -0.35 -13.18 9.38 -55.50 -0.52 -13.70 16 7 C 0.10 4.20 4.66 71.98 0.34 4.54 16 8 C 0.09 3.63 1.87 44.94 0.08 3.72 16 9 H 0.05 2.06 6.79 -2.39 -0.02 2.04 16 10 C -0.10 -2.94 5.21 30.64 0.16 -2.78 16 11 C -0.11 -2.84 6.00 30.67 0.18 -2.66 16 12 C -0.11 -3.01 6.09 30.64 0.19 -2.82 16 13 C 0.06 2.43 5.05 86.32 0.44 2.86 16 14 N -0.53 -22.83 4.62 -875.64 -4.05 -26.88 16 15 C 0.20 10.82 4.70 85.56 0.40 11.22 16 16 C -0.56 -31.13 7.71 25.60 0.20 -30.93 16 17 H 0.06 3.21 5.86 -2.91 -0.02 3.19 16 18 C 0.01 0.67 5.46 84.65 0.46 1.13 16 19 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 20 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.42 8.54 8.58 -92.71 -0.80 7.75 16 30 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.04 2.22 6.05 -2.39 -0.01 2.20 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 2.14 7.57 -2.38 -0.02 2.13 16 34 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.05 2.08 8.12 -2.39 -0.02 2.06 16 39 H 0.02 0.82 6.80 -2.39 -0.02 0.80 16 40 H 0.00 0.12 5.92 -2.39 -0.01 0.10 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -71.83 333.45 -0.16 -71.99 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.21 Total: 16.13 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 4.86 Total: 10.95 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -7.05 Total: -104.95 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.20 Total: -40.86 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -71.83 -0.16 -71.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495679384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.584 kcal (2) G-P(sol) polarization free energy of solvation -71.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds