Wall clock time and date at job start Mon Mar 30 2020 00:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47156 * 2 1 4 4 C 1.34770 * 120.00218 * 180.02562 * 3 2 1 5 5 O 1.21517 * 119.99646 * 359.97438 * 4 3 2 6 6 O 1.34636 * 120.00532 * 179.97438 * 4 3 2 7 7 C 1.45197 * 117.00258 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47183 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.46458 * 176.48638 * 8 7 6 10 10 C 1.53043 * 109.46329 * 56.51169 * 8 7 6 11 11 C 1.53118 * 109.28045 * 180.80854 * 10 8 7 12 12 C 1.53111 * 109.16149 * 57.64891 * 11 10 8 13 13 C 1.53041 * 109.28204 * 302.34571 * 12 11 10 14 14 N 1.46846 * 109.46297 * 296.46899 * 8 7 6 15 15 C 1.46894 * 110.99713 * 305.85148 * 14 8 7 16 16 C 1.50703 * 109.47199 * 174.01546 * 15 14 8 17 17 H 1.08002 * 119.99945 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00264 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99528 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00208 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47327 * 89.99866 * 20 18 16 22 22 H 1.48496 * 109.47198 * 210.00257 * 20 18 16 23 23 H 1.48505 * 109.46868 * 330.00280 * 20 18 16 24 24 H 1.09001 * 109.47047 * 60.00377 * 1 2 3 25 25 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47140 * 300.00347 * 1 2 3 27 27 H 1.08995 * 109.47140 * 239.99652 * 2 1 3 28 28 H 1.09001 * 109.46343 * 119.99877 * 2 1 3 29 29 H 0.97004 * 119.99936 * 359.97438 * 3 2 1 30 30 H 1.09006 * 109.47010 * 299.99532 * 7 6 4 31 31 H 1.09000 * 109.47088 * 59.99711 * 7 6 4 32 32 H 1.09005 * 109.49786 * 300.74254 * 10 8 7 33 33 H 1.08998 * 109.50646 * 60.86032 * 10 8 7 34 34 H 1.08999 * 109.52321 * 177.56033 * 11 10 8 35 35 H 1.09006 * 109.51638 * 297.74445 * 11 10 8 36 36 H 1.08998 * 109.50596 * 62.28937 * 12 11 10 37 37 H 1.09008 * 109.50261 * 182.40846 * 12 11 10 38 38 H 1.08995 * 109.46364 * 179.19379 * 13 12 11 39 39 H 1.09000 * 109.46233 * 299.17949 * 13 12 11 40 40 H 1.09003 * 109.47321 * 294.01661 * 15 14 8 41 41 H 1.09002 * 109.47515 * 54.01626 * 15 14 8 42 42 H 0.97008 * 119.99587 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1330 0.7038 -0.0005 6 8 3.7923 2.8968 -0.0010 7 6 5.2317 3.0871 -0.0010 8 6 5.5483 4.5839 -0.0023 9 1 6.6271 4.7270 0.0607 10 6 4.8748 5.2486 1.2005 11 6 5.1776 6.7495 1.1839 12 6 4.6882 7.3463 -0.1384 13 6 5.3673 6.6209 -1.3024 14 7 5.0460 5.1892 -1.2423 15 6 5.5661 4.4834 -2.4209 16 6 4.9174 5.0355 -3.6640 17 1 4.1916 5.8315 -3.5863 18 6 5.2511 4.5252 -4.9007 19 7 6.1353 3.5563 -4.9953 20 14 4.4475 5.2101 -6.4416 21 1 5.2597 6.3383 -6.9638 22 1 4.3620 4.1435 -7.4711 23 1 3.0818 5.6932 -6.1146 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.3880 2.1185 -0.0004 30 1 5.6591 2.6257 0.8893 31 1 5.6593 2.6248 -0.8907 32 1 3.7971 5.0942 1.1452 33 1 5.2591 4.8099 2.1213 34 1 4.6641 7.2339 2.0144 35 1 6.2523 6.9052 1.2783 36 1 3.6077 7.2250 -0.2147 37 1 4.9393 8.4065 -0.1742 38 1 5.0101 7.0339 -2.2457 39 1 6.4469 6.7541 -1.2330 40 1 6.6454 4.6235 -2.4814 41 1 5.3421 3.4200 -2.3359 42 1 6.3699 3.1970 -5.8653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495679385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:57 Heat of formation + Delta-G solvation = -89.413426 kcal Electronic energy + Delta-G solvation = -21826.245052 eV Core-core repulsion = 18612.926725 eV Total energy + Delta-G solvation = -3213.318326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05672 -38.53160 -36.37299 -34.93140 -33.60548 -32.01498 -31.35725 -30.31504 -27.07542 -26.03887 -23.77980 -23.27915 -21.58497 -21.11493 -20.52705 -19.05922 -18.25786 -16.52990 -16.38662 -16.08397 -15.25513 -14.89467 -14.77822 -14.27087 -14.15484 -13.90418 -13.42620 -13.29754 -12.84292 -12.50018 -12.38496 -12.25659 -11.92015 -11.89095 -11.52613 -11.39012 -11.24488 -10.79641 -10.75278 -10.67603 -10.38166 -10.24675 -10.11195 -10.05391 -9.90814 -9.36565 -9.07558 -9.01606 -8.40093 -7.17467 -6.00425 -4.01188 2.54433 3.24043 3.32387 3.38729 3.42767 4.42566 4.52274 4.80835 4.89302 5.00295 5.15215 5.20578 5.25251 5.34927 5.35681 5.65092 5.68039 5.68970 5.74076 5.82752 5.83652 5.93518 6.05269 6.10800 6.19722 6.29790 6.34593 6.42115 6.48339 6.60338 6.78355 6.81405 6.88576 7.33770 7.37729 7.65833 7.81989 8.11682 8.24420 8.58133 8.71700 9.05811 9.62391 11.10660 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.006847 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.565783 B = 4088.369982 C = 5706.862131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 N -0.714 5.714 4 C 0.646 3.354 5 O -0.581 6.581 6 O -0.342 6.342 7 C 0.095 3.905 8 C 0.084 3.916 9 H 0.051 0.949 10 C -0.108 4.108 11 C -0.118 4.118 12 C -0.117 4.117 13 C 0.064 3.936 14 N -0.523 5.523 15 C 0.188 3.812 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.406 0.594 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.017 0.983 40 H -0.012 1.012 41 H 0.036 0.964 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 -0.391 12.894 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.375 5.375 4 C 0.399 3.601 5 O -0.471 6.471 6 O -0.255 6.255 7 C 0.021 3.979 8 C -0.025 4.025 9 H 0.068 0.932 10 C -0.146 4.146 11 C -0.155 4.155 12 C -0.155 4.155 13 C -0.064 4.064 14 N -0.249 5.249 15 C 0.063 3.937 16 C -0.544 4.544 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.241 0.759 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.036 0.964 40 H 0.006 0.994 41 H 0.053 0.947 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.674 -0.976 12.754 14.917 hybrid contribution 0.411 0.554 -1.013 1.226 sum -7.262 -0.422 11.741 13.812 Atomic orbital electron populations 1.22013 0.94181 1.03186 1.02836 1.21229 0.93985 0.81173 1.02568 1.44619 1.04177 1.09413 1.79317 1.18243 0.83598 0.82401 0.75863 1.90965 1.55252 1.44970 1.55946 1.86317 1.27526 1.25762 1.85883 1.23189 0.75691 0.96668 1.02401 1.21693 0.96533 0.91323 0.92975 0.93166 1.21552 1.02137 0.94845 0.96018 1.21557 1.00354 0.95930 0.97687 1.21633 1.01251 0.98095 0.94548 1.21955 0.96487 0.89267 0.98663 1.62062 1.59596 1.01895 1.01357 1.19824 0.93022 0.94613 0.86248 1.21131 1.23593 1.19441 0.90194 0.91843 1.24988 0.95338 0.95154 0.99156 1.69963 1.32801 1.26465 1.24472 0.86524 0.79815 0.78499 0.82735 1.20767 1.21307 1.19805 0.91607 0.90626 0.91910 0.91284 0.91548 0.75896 0.91926 0.89887 0.90523 0.92632 0.92585 0.92800 0.91447 0.92612 0.89621 0.96432 0.99415 0.94650 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 10.03 37.16 0.37 -0.89 16 2 C 0.13 1.51 6.39 -4.04 -0.03 1.49 16 3 N -0.71 -9.97 5.56 -65.28 -0.36 -10.33 16 4 C 0.65 11.91 8.75 54.05 0.47 12.38 16 5 O -0.58 -12.40 16.13 -19.29 -0.31 -12.71 16 6 O -0.34 -6.48 9.37 -40.31 -0.38 -6.86 16 7 C 0.10 1.80 4.67 37.16 0.17 1.97 16 8 C 0.08 1.53 2.24 -67.72 -0.15 1.38 16 9 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 10 C -0.11 -1.61 5.21 -26.65 -0.14 -1.75 16 11 C -0.12 -1.61 6.00 -26.61 -0.16 -1.77 16 12 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 13 C 0.06 1.25 5.27 -3.83 -0.02 1.23 16 14 N -0.52 -11.23 4.45 -228.12 -1.01 -12.24 16 15 C 0.19 4.91 4.38 -4.98 -0.02 4.89 16 16 C -0.50 -14.22 8.41 -34.44 -0.29 -14.51 16 17 H 0.06 1.76 6.83 -52.49 -0.36 1.40 16 18 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.41 4.77 8.58 -40.82 -0.35 4.42 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.82 5.98 -51.93 -0.31 1.51 16 32 H 0.08 1.21 7.57 -51.93 -0.39 0.82 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.09 1.81 6.41 -51.93 -0.33 1.48 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 41 H 0.04 1.01 5.79 -51.93 -0.30 0.71 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -32.84 336.01 -8.43 -41.27 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.10 Total: 1.41 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.05 Total: 3.93 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.64 Total: -48.91 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.69 Total: -19.57 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.84 -8.43 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495679385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.143 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds