Wall clock time and date at job start Mon Mar 30 2020 00:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47156 * 2 1 4 4 C 1.34770 * 120.00218 * 180.02562 * 3 2 1 5 5 O 1.21517 * 119.99646 * 359.97438 * 4 3 2 6 6 O 1.34636 * 120.00532 * 179.97438 * 4 3 2 7 7 C 1.45197 * 117.00258 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47183 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.46458 * 176.48638 * 8 7 6 10 10 C 1.53043 * 109.46329 * 56.51169 * 8 7 6 11 11 C 1.53118 * 109.28045 * 180.80854 * 10 8 7 12 12 C 1.53111 * 109.16149 * 57.64891 * 11 10 8 13 13 C 1.53041 * 109.28204 * 302.34571 * 12 11 10 14 14 N 1.46846 * 109.46297 * 296.46899 * 8 7 6 15 15 C 1.46894 * 110.99713 * 305.85148 * 14 8 7 16 16 C 1.50703 * 109.47199 * 174.01546 * 15 14 8 17 17 H 1.08002 * 119.99945 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00264 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99528 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00208 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47327 * 89.99866 * 20 18 16 22 22 H 1.48496 * 109.47198 * 210.00257 * 20 18 16 23 23 H 1.48505 * 109.46868 * 330.00280 * 20 18 16 24 24 H 1.09001 * 109.47047 * 60.00377 * 1 2 3 25 25 H 1.09001 * 109.47065 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47140 * 300.00347 * 1 2 3 27 27 H 1.08995 * 109.47140 * 239.99652 * 2 1 3 28 28 H 1.09001 * 109.46343 * 119.99877 * 2 1 3 29 29 H 0.97004 * 119.99936 * 359.97438 * 3 2 1 30 30 H 1.09006 * 109.47010 * 299.99532 * 7 6 4 31 31 H 1.09000 * 109.47088 * 59.99711 * 7 6 4 32 32 H 1.09005 * 109.49786 * 300.74254 * 10 8 7 33 33 H 1.08998 * 109.50646 * 60.86032 * 10 8 7 34 34 H 1.08999 * 109.52321 * 177.56033 * 11 10 8 35 35 H 1.09006 * 109.51638 * 297.74445 * 11 10 8 36 36 H 1.08998 * 109.50596 * 62.28937 * 12 11 10 37 37 H 1.09008 * 109.50261 * 182.40846 * 12 11 10 38 38 H 1.08995 * 109.46364 * 179.19379 * 13 12 11 39 39 H 1.09000 * 109.46233 * 299.17949 * 13 12 11 40 40 H 1.09003 * 109.47321 * 294.01661 * 15 14 8 41 41 H 1.09002 * 109.47515 * 54.01626 * 15 14 8 42 42 H 0.97008 * 119.99587 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1330 0.7038 -0.0005 6 8 3.7923 2.8968 -0.0010 7 6 5.2317 3.0871 -0.0010 8 6 5.5483 4.5839 -0.0023 9 1 6.6271 4.7270 0.0607 10 6 4.8748 5.2486 1.2005 11 6 5.1776 6.7495 1.1839 12 6 4.6882 7.3463 -0.1384 13 6 5.3673 6.6209 -1.3024 14 7 5.0460 5.1892 -1.2423 15 6 5.5661 4.4834 -2.4209 16 6 4.9174 5.0355 -3.6640 17 1 4.1916 5.8315 -3.5863 18 6 5.2511 4.5252 -4.9007 19 7 6.1353 3.5563 -4.9953 20 14 4.4475 5.2101 -6.4416 21 1 5.2597 6.3383 -6.9638 22 1 4.3620 4.1435 -7.4711 23 1 3.0818 5.6932 -6.1146 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 1.3880 2.1185 -0.0004 30 1 5.6591 2.6257 0.8893 31 1 5.6593 2.6248 -0.8907 32 1 3.7971 5.0942 1.1452 33 1 5.2591 4.8099 2.1213 34 1 4.6641 7.2339 2.0144 35 1 6.2523 6.9052 1.2783 36 1 3.6077 7.2250 -0.2147 37 1 4.9393 8.4065 -0.1742 38 1 5.0101 7.0339 -2.2457 39 1 6.4469 6.7541 -1.2330 40 1 6.6454 4.6235 -2.4814 41 1 5.3421 3.4200 -2.3359 42 1 6.3699 3.1970 -5.8653 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495679385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:57 Heat of formation + Delta-G solvation = -113.498673 kcal Electronic energy + Delta-G solvation = -21827.289466 eV Core-core repulsion = 18612.926725 eV Total energy + Delta-G solvation = -3214.362741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52193 -40.03031 -37.72453 -36.27387 -35.46678 -33.76217 -32.86540 -31.31791 -28.97693 -27.57673 -25.52652 -24.28517 -23.20222 -22.52155 -21.97820 -20.48248 -19.64672 -18.54093 -17.87741 -17.63498 -16.88990 -16.32419 -16.01111 -15.96275 -15.45529 -15.17639 -15.08227 -14.66928 -14.27454 -14.06395 -13.88110 -13.56156 -13.29847 -13.19911 -12.72377 -12.70294 -12.65120 -12.60246 -12.41226 -12.17185 -11.96998 -11.81881 -11.74292 -11.49171 -11.45890 -11.02353 -10.88424 -10.58657 -10.23080 -8.96124 -8.21685 -6.31277 1.22280 1.38126 1.40086 1.51569 1.77195 2.38414 3.10125 3.18040 3.28000 3.77702 3.86726 4.08819 4.11908 4.21416 4.22280 4.33515 4.37976 4.41278 4.51146 4.62937 4.69954 4.87464 4.93843 4.98060 5.05927 5.06047 5.15400 5.21347 5.23013 5.27641 5.32254 5.33862 5.43054 5.52231 5.58758 5.66165 6.05457 6.36401 6.39635 6.67091 6.85798 7.32291 7.38133 8.89859 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.006847 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.565783 B = 4088.369982 C = 5706.862131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 N -0.696 5.696 4 C 0.635 3.365 5 O -0.618 6.618 6 O -0.346 6.346 7 C 0.099 3.901 8 C 0.081 3.919 9 H 0.052 0.948 10 C -0.100 4.100 11 C -0.113 4.113 12 C -0.108 4.108 13 C 0.062 3.938 14 N -0.528 5.528 15 C 0.206 3.794 16 C -0.519 4.519 17 H 0.065 0.935 18 C -0.002 4.002 19 N -0.937 5.937 20 Si 0.969 3.031 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.263 1.263 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.418 0.582 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.012 0.988 40 H -0.045 1.045 41 H 0.005 0.995 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.663 1.082 14.248 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.004 3.996 3 N -0.358 5.358 4 C 0.388 3.612 5 O -0.511 6.511 6 O -0.258 6.258 7 C 0.024 3.976 8 C -0.028 4.028 9 H 0.069 0.931 10 C -0.137 4.137 11 C -0.150 4.150 12 C -0.146 4.146 13 C -0.066 4.066 14 N -0.253 5.253 15 C 0.079 3.921 16 C -0.557 4.557 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.794 3.206 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.187 1.187 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.256 0.744 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.030 0.970 40 H -0.028 1.028 41 H 0.023 0.977 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.659 0.524 14.134 17.127 hybrid contribution 1.021 0.046 -1.399 1.732 sum -8.638 0.570 12.735 15.398 Atomic orbital electron populations 1.21975 0.90762 1.04735 1.03575 1.21491 0.96647 0.79532 1.01890 1.44767 1.02591 1.11075 1.77341 1.18629 0.84814 0.81794 0.75942 1.90932 1.56516 1.45744 1.57860 1.86303 1.27315 1.26232 1.85980 1.23097 0.75930 0.97227 1.01373 1.21862 0.97034 0.90953 0.92916 0.93069 1.21533 1.01368 0.95842 0.94977 1.21562 1.01213 0.94689 0.97558 1.21582 1.00521 0.99008 0.93502 1.22019 0.96617 0.88167 0.99817 1.61999 1.59479 1.02898 1.00968 1.19415 0.90902 0.93451 0.88285 1.21458 1.23574 1.19417 0.91249 0.91680 1.25953 0.95820 0.95327 1.02819 1.70112 1.34343 1.27919 1.25386 0.85383 0.79174 0.77938 0.78152 1.19597 1.20995 1.18688 0.91557 0.88652 0.90406 0.92985 0.91296 0.74448 0.89698 0.94134 0.91106 0.89924 0.89326 0.92077 0.91727 0.90084 0.92010 0.96999 1.02753 0.97723 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.03 71.98 0.72 -1.28 16 2 C 0.13 2.78 6.39 86.38 0.55 3.33 16 3 N -0.70 -19.12 5.56 -590.86 -3.28 -22.41 16 4 C 0.63 23.89 8.75 129.79 1.14 25.03 16 5 O -0.62 -27.32 16.13 19.79 0.32 -27.00 16 6 O -0.35 -13.32 9.37 -55.45 -0.52 -13.84 16 7 C 0.10 3.86 4.67 71.98 0.34 4.19 16 8 C 0.08 2.96 2.24 44.94 0.10 3.06 16 9 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 10 C -0.10 -2.73 5.21 30.65 0.16 -2.57 16 11 C -0.11 -2.68 6.00 30.67 0.18 -2.50 16 12 C -0.11 -3.06 6.09 30.64 0.19 -2.87 16 13 C 0.06 2.39 5.27 86.33 0.45 2.85 16 14 N -0.53 -23.18 4.45 -875.64 -3.89 -27.07 16 15 C 0.21 11.36 4.38 85.56 0.37 11.74 16 16 C -0.52 -30.14 8.41 25.60 0.22 -29.93 16 17 H 0.07 3.68 6.83 -2.91 -0.02 3.66 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.94 -58.57 13.29 21.45 0.28 -58.28 16 20 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 23 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.42 9.31 8.58 -92.71 -0.80 8.52 16 30 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 31 H 0.04 1.92 5.98 -2.39 -0.01 1.90 16 32 H 0.07 2.06 7.57 -2.38 -0.02 2.04 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.06 2.65 6.41 -2.39 -0.02 2.64 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H -0.05 -2.72 8.14 -2.39 -0.02 -2.74 16 41 H 0.00 0.29 5.79 -2.39 -0.01 0.28 16 42 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 Total: -1.00 -74.57 336.01 0.02 -74.56 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.20 Total: 15.28 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 4.88 Total: 11.42 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -6.89 Total: -107.76 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.20 Total: -40.84 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.57 0.02 -74.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495679385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.941 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds