Wall clock time and date at job start Mon Mar 30 2020 01:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.46850 * 2 1 4 4 C 1.42900 * 113.99683 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56611 * 4.31712 * 4 3 2 6 6 C 1.53078 * 117.51262 * 218.60401 * 4 3 2 7 7 C 1.52995 * 59.98683 * 252.53093 * 6 4 3 8 8 H 1.09004 * 117.49664 * 252.50347 * 7 6 4 9 9 N 1.46501 * 117.50257 * 107.50548 * 7 6 4 10 10 C 1.34764 * 120.00153 * 136.24991 * 9 7 6 11 11 O 1.21591 * 120.00370 * 359.97438 * 10 9 7 12 12 N 1.34779 * 120.00337 * 180.02562 * 10 9 7 13 13 C 1.46492 * 120.00559 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47363 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 13 12 16 16 C 1.52999 * 109.46623 * 299.99764 * 14 13 12 17 17 C 1.50697 * 109.47239 * 180.02562 * 14 13 12 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 13 20 20 N 1.31508 * 119.99915 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99777 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47204 * 119.99883 * 21 19 17 24 24 H 1.48496 * 109.47191 * 240.00215 * 21 19 17 25 25 H 1.09008 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47271 * 299.99326 * 1 2 3 27 27 H 1.09000 * 109.47633 * 60.00079 * 1 2 3 28 28 H 1.09004 * 109.47271 * 240.00674 * 2 1 3 29 29 H 1.09000 * 109.47633 * 119.99921 * 2 1 3 30 30 H 1.09005 * 117.49085 * 145.03954 * 6 4 3 31 31 H 1.09002 * 117.52950 * 0.02562 * 6 4 3 32 32 H 0.97003 * 119.99132 * 316.24910 * 9 7 6 33 33 H 0.97009 * 119.99396 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47152 * 59.99958 * 13 12 10 35 35 H 1.09001 * 109.47164 * 300.00062 * 13 12 10 36 36 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 37 37 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 38 38 H 1.09004 * 109.47261 * 300.00303 * 15 14 13 39 39 H 1.09002 * 109.46716 * 179.97438 * 16 14 13 40 40 H 1.09000 * 109.47486 * 299.99829 * 16 14 13 41 41 H 1.09001 * 109.47362 * 60.00551 * 16 14 13 42 42 H 0.97001 * 119.99839 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9771 0.5199 -0.0750 6 6 4.0523 2.5735 0.8464 7 6 4.0418 2.6878 -0.6792 8 1 4.9900 2.5550 -1.2004 9 7 3.1218 3.6576 -1.2787 10 6 3.5405 4.4513 -2.2841 11 8 4.6820 4.3631 -2.6934 12 7 2.6942 5.3439 -2.8352 13 6 3.1492 6.2063 -3.9285 14 6 2.0031 7.1197 -4.3683 15 6 1.5586 7.9849 -3.1873 16 6 0.8266 6.2670 -4.8472 17 6 2.4710 8.0065 -5.4933 18 1 3.4844 7.9270 -5.8579 19 6 1.6051 8.9195 -6.0571 20 7 0.3709 9.0159 -5.6135 21 14 2.1852 10.0192 -7.4512 22 1 3.6054 9.7165 -7.7623 23 1 1.3512 9.7740 -8.6551 24 1 2.0606 11.4418 -7.0441 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 5.0072 2.3652 1.3290 31 1 3.3748 3.2198 1.4045 32 1 2.2112 3.7282 -0.9519 33 1 1.7836 5.4146 -2.5084 34 1 3.4663 5.5900 -4.7697 35 1 3.9871 6.8141 -3.5871 36 1 0.7418 8.6353 -3.5005 37 1 2.3968 8.5923 -2.8461 38 1 1.2200 7.3431 -2.3738 39 1 0.0100 6.9177 -5.1601 40 1 1.1433 5.6506 -5.6886 41 1 0.4880 5.6253 -4.0338 42 1 -0.2384 9.6579 -6.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563088828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:08 Heat of formation + Delta-G solvation = -55.621434 kcal Electronic energy + Delta-G solvation = -20974.838749 eV Core-core repulsion = 17762.985754 eV Total energy + Delta-G solvation = -3211.852996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78347 -38.58302 -36.53441 -35.66968 -33.27974 -32.32261 -30.98006 -30.44620 -25.67649 -25.56631 -24.82920 -23.15899 -22.34999 -21.89825 -20.47509 -18.74927 -18.19388 -17.33913 -15.84777 -15.78363 -15.71863 -14.96325 -14.90191 -14.64999 -14.11962 -13.57248 -13.25770 -12.97482 -12.83561 -12.80156 -12.63123 -12.21187 -12.13166 -11.56130 -11.42144 -11.24314 -11.16542 -11.08222 -10.82810 -10.62723 -10.33866 -10.17648 -9.75989 -9.58617 -9.47284 -9.26180 -8.74068 -8.65636 -8.37326 -8.09961 -5.98823 -4.08550 2.95160 3.29637 3.30479 3.38165 3.43419 3.47782 3.96316 4.41160 4.59289 4.70088 4.76984 4.80447 4.88159 5.05738 5.12644 5.24555 5.28007 5.54457 5.59126 5.63344 5.83274 5.87963 6.26541 6.41344 6.55784 6.67911 6.84786 6.88222 6.95957 7.02632 7.07946 7.14770 7.37147 7.48180 7.60500 7.73621 8.05427 8.16815 8.42303 8.53924 8.91677 9.08894 9.57079 11.02628 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030067 B = 0.003539 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.018979 B = 7909.960659 C = 8450.428294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.004 3.996 5 H 0.114 0.886 6 C -0.204 4.204 7 C 0.114 3.886 8 H 0.141 0.859 9 N -0.717 5.717 10 C 0.701 3.299 11 O -0.601 6.601 12 N -0.732 5.732 13 C 0.151 3.849 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.400 0.600 33 H 0.394 0.606 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.006 0.994 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.006 0.994 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 -15.653 12.633 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.273 6.273 4 C -0.055 4.055 5 H 0.132 0.868 6 C -0.244 4.244 7 C 0.005 3.995 8 H 0.159 0.841 9 N -0.371 5.371 10 C 0.401 3.599 11 O -0.481 6.481 12 N -0.385 5.385 13 C 0.028 3.972 14 C 0.055 3.945 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.077 0.923 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.235 0.765 33 H 0.229 0.771 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.045 0.955 38 H 0.025 0.975 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.025 0.975 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.216 -15.414 12.150 19.665 hybrid contribution -0.477 0.427 -0.314 0.713 sum 0.739 -14.987 11.836 19.112 Atomic orbital electron populations 1.21760 0.93566 1.02334 1.03372 1.22528 0.95619 0.83403 1.00113 1.87803 1.18553 1.26787 1.94183 1.23365 0.82401 0.94699 1.05085 0.86815 1.24053 1.02767 1.02110 0.95446 1.21852 0.95436 0.90158 0.92028 0.84122 1.44303 1.15116 1.39707 1.37927 1.16020 0.85020 0.79340 0.79517 1.90865 1.18373 1.73044 1.65778 1.45492 1.14597 1.39242 1.39219 1.21589 0.98510 0.90974 0.86162 1.18371 0.90500 0.91590 0.94072 1.21816 1.01732 0.99696 0.95490 1.21817 1.01535 0.98116 0.97269 1.21036 0.98001 1.18603 1.16638 0.92343 1.24883 0.94864 0.96947 0.96872 1.69818 1.04859 1.36006 1.41794 0.86517 0.78953 0.80351 0.82072 1.19743 1.21095 1.21104 0.91048 0.91828 0.91567 0.93132 0.93310 0.87549 0.87933 0.76522 0.77124 0.92953 0.92938 0.89678 0.95457 0.97528 0.89674 0.95467 0.97522 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.49 6.53 37.16 0.24 0.73 16 3 O -0.35 -3.84 10.03 -35.23 -0.35 -4.20 16 4 C 0.00 0.04 6.45 -26.69 -0.17 -0.13 16 5 H 0.11 0.86 7.93 -51.93 -0.41 0.45 16 6 C -0.20 -1.98 10.41 -26.69 -0.28 -2.26 16 7 C 0.11 1.41 6.43 -67.93 -0.44 0.98 16 8 H 0.14 1.86 7.40 -51.93 -0.38 1.48 16 9 N -0.72 -10.46 5.47 -58.67 -0.32 -10.78 16 10 C 0.70 13.14 8.57 -86.93 -0.74 12.39 16 11 O -0.60 -13.40 15.91 5.29 0.08 -13.32 16 12 N -0.73 -13.77 4.96 -65.23 -0.32 -14.09 16 13 C 0.15 3.32 4.50 -4.04 -0.02 3.31 16 14 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 15 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 16 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 17 C -0.50 -13.41 8.01 -34.44 -0.28 -13.68 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 19 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 20 N -0.89 -23.84 9.35 55.43 0.52 -23.32 16 21 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 5.22 8.40 -40.82 -0.34 4.88 16 33 H 0.39 6.74 6.18 -40.82 -0.25 6.48 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 39 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 42 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -29.95 340.95 -8.07 -38.03 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.93 Total: 8.52 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.87 Total: -1.89 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.13 Total: -48.19 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.27 Total: -17.51 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.95 -8.07 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563088828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.592 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds