Wall clock time and date at job start Mon Mar 30 2020 01:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.46850 * 2 1 4 4 C 1.42900 * 113.99683 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.56611 * 4.31712 * 4 3 2 6 6 C 1.53078 * 117.51262 * 218.60401 * 4 3 2 7 7 C 1.52995 * 59.98683 * 252.53093 * 6 4 3 8 8 H 1.09004 * 117.49664 * 252.50347 * 7 6 4 9 9 N 1.46501 * 117.50257 * 107.50548 * 7 6 4 10 10 C 1.34764 * 120.00153 * 136.24991 * 9 7 6 11 11 O 1.21591 * 120.00370 * 359.97438 * 10 9 7 12 12 N 1.34779 * 120.00337 * 180.02562 * 10 9 7 13 13 C 1.46492 * 120.00559 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47363 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47127 * 59.99700 * 14 13 12 16 16 C 1.52999 * 109.46623 * 299.99764 * 14 13 12 17 17 C 1.50697 * 109.47239 * 180.02562 * 14 13 12 18 18 H 1.07998 * 120.00039 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99815 * 179.97438 * 17 14 13 20 20 N 1.31508 * 119.99915 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99777 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47152 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47204 * 119.99883 * 21 19 17 24 24 H 1.48496 * 109.47191 * 240.00215 * 21 19 17 25 25 H 1.09008 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47271 * 299.99326 * 1 2 3 27 27 H 1.09000 * 109.47633 * 60.00079 * 1 2 3 28 28 H 1.09004 * 109.47271 * 240.00674 * 2 1 3 29 29 H 1.09000 * 109.47633 * 119.99921 * 2 1 3 30 30 H 1.09005 * 117.49085 * 145.03954 * 6 4 3 31 31 H 1.09002 * 117.52950 * 0.02562 * 6 4 3 32 32 H 0.97003 * 119.99132 * 316.24910 * 9 7 6 33 33 H 0.97009 * 119.99396 * 359.97438 * 12 10 9 34 34 H 1.09000 * 109.47152 * 59.99958 * 13 12 10 35 35 H 1.09001 * 109.47164 * 300.00062 * 13 12 10 36 36 H 1.09002 * 109.47153 * 180.02562 * 15 14 13 37 37 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 38 38 H 1.09004 * 109.47261 * 300.00303 * 15 14 13 39 39 H 1.09002 * 109.46716 * 179.97438 * 16 14 13 40 40 H 1.09000 * 109.47486 * 299.99829 * 16 14 13 41 41 H 1.09001 * 109.47362 * 60.00551 * 16 14 13 42 42 H 0.97001 * 119.99839 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9771 0.5199 -0.0750 6 6 4.0523 2.5735 0.8464 7 6 4.0418 2.6878 -0.6792 8 1 4.9900 2.5550 -1.2004 9 7 3.1218 3.6576 -1.2787 10 6 3.5405 4.4513 -2.2841 11 8 4.6820 4.3631 -2.6934 12 7 2.6942 5.3439 -2.8352 13 6 3.1492 6.2063 -3.9285 14 6 2.0031 7.1197 -4.3683 15 6 1.5586 7.9849 -3.1873 16 6 0.8266 6.2670 -4.8472 17 6 2.4710 8.0065 -5.4933 18 1 3.4844 7.9270 -5.8579 19 6 1.6051 8.9195 -6.0571 20 7 0.3709 9.0159 -5.6135 21 14 2.1852 10.0192 -7.4512 22 1 3.6054 9.7165 -7.7623 23 1 1.3512 9.7740 -8.6551 24 1 2.0606 11.4418 -7.0441 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 5.0072 2.3652 1.3290 31 1 3.3748 3.2198 1.4045 32 1 2.2112 3.7282 -0.9519 33 1 1.7836 5.4146 -2.5084 34 1 3.4663 5.5900 -4.7697 35 1 3.9871 6.8141 -3.5871 36 1 0.7418 8.6353 -3.5005 37 1 2.3968 8.5923 -2.8461 38 1 1.2200 7.3431 -2.3738 39 1 0.0100 6.9177 -5.1601 40 1 1.1433 5.6506 -5.6886 41 1 0.4880 5.6253 -4.0338 42 1 -0.2384 9.6579 -6.0104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563088828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:07 Heat of formation + Delta-G solvation = -75.400036 kcal Electronic energy + Delta-G solvation = -20975.696414 eV Core-core repulsion = 17762.985754 eV Total energy + Delta-G solvation = -3212.710660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.13231 -39.57735 -38.18628 -36.71733 -35.01080 -33.67766 -32.34461 -31.50913 -27.55762 -27.45488 -26.67356 -23.76879 -23.25556 -22.92883 -21.78647 -20.57864 -19.66500 -18.25191 -17.77168 -16.89729 -16.55309 -16.46107 -16.39872 -16.07850 -15.36808 -15.02066 -14.70919 -14.66030 -14.11247 -13.96459 -13.58394 -13.28730 -13.21191 -13.09918 -12.94299 -12.71863 -12.55788 -12.36946 -12.21958 -12.12965 -12.06483 -11.78967 -11.47748 -11.39728 -11.15078 -10.69146 -10.40029 -10.32141 -10.02483 -9.41570 -8.01343 -6.17051 1.42495 1.46292 1.55918 1.72604 2.10236 2.46725 2.55795 2.99301 3.22239 3.35222 3.83574 3.96655 4.13329 4.22888 4.38722 4.44107 4.50795 4.53778 4.54290 4.71369 4.82525 4.91724 4.98821 5.03426 5.05932 5.06713 5.11934 5.20820 5.29998 5.38946 5.57180 5.63465 5.67759 5.68384 6.07567 6.15289 6.22552 6.29739 6.44551 6.87325 7.14220 7.50638 7.62493 8.97906 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.030067 B = 0.003539 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.018979 B = 7909.960659 C = 8450.428294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.376 6.376 4 C 0.022 3.978 5 H 0.141 0.859 6 C -0.186 4.186 7 C 0.074 3.926 8 H 0.127 0.873 9 N -0.701 5.701 10 C 0.700 3.300 11 O -0.640 6.640 12 N -0.726 5.726 13 C 0.168 3.832 14 C 0.052 3.948 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.528 4.528 18 H 0.045 0.955 19 C 0.028 3.972 20 N -0.899 5.899 21 Si 0.947 3.053 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.100 0.900 32 H 0.410 0.590 33 H 0.404 0.596 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.018 0.982 41 H 0.034 0.966 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 -17.009 14.021 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.295 6.295 4 C -0.038 4.038 5 H 0.158 0.842 6 C -0.224 4.224 7 C -0.034 4.034 8 H 0.145 0.855 9 N -0.355 5.355 10 C 0.400 3.600 11 O -0.523 6.523 12 N -0.381 5.381 13 C 0.044 3.956 14 C 0.051 3.949 15 C -0.177 4.177 16 C -0.177 4.177 17 C -0.567 4.567 18 H 0.063 0.937 19 C -0.172 4.172 20 N -0.538 5.538 21 Si 0.774 3.226 22 H -0.200 1.200 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.109 0.891 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.118 0.882 32 H 0.245 0.755 33 H 0.241 0.759 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.053 0.947 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.835 -16.805 13.586 21.626 hybrid contribution -0.384 0.776 -0.693 1.109 sum 0.451 -16.029 12.893 20.576 Atomic orbital electron populations 1.21783 0.93204 1.03402 1.02563 1.22732 0.95985 0.82370 1.01187 1.87781 1.18963 1.28590 1.94139 1.23470 0.82431 0.94940 1.02913 0.84154 1.24087 1.03764 1.01464 0.93128 1.22086 0.95363 0.91999 0.93927 0.85485 1.44141 1.15851 1.38952 1.36525 1.16122 0.84332 0.79510 0.80078 1.90836 1.20060 1.74190 1.67180 1.45204 1.15112 1.39097 1.38661 1.21137 0.97375 0.90605 0.86512 1.18363 0.91113 0.91732 0.93690 1.21656 1.00500 0.99539 0.95997 1.21655 1.00337 0.97770 0.97915 1.21304 0.97651 1.19766 1.17980 0.93663 1.25463 0.95062 0.97968 0.98702 1.69918 1.05291 1.36238 1.42358 0.85680 0.78311 0.78869 0.79786 1.19981 1.20684 1.20712 0.89098 0.92055 0.92910 0.92722 0.91498 0.85219 0.88182 0.75456 0.75926 0.94615 0.94568 0.91860 0.96287 0.94658 0.91853 0.96321 0.94690 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.73 6.53 71.98 0.47 1.20 16 3 O -0.38 -7.24 10.03 -148.98 -1.49 -8.73 16 4 C 0.02 0.38 6.45 30.62 0.20 0.57 16 5 H 0.14 1.63 7.93 -2.39 -0.02 1.61 16 6 C -0.19 -3.12 10.41 30.62 0.32 -2.80 16 7 C 0.07 1.73 6.43 44.99 0.29 2.02 16 8 H 0.13 3.33 7.40 -2.38 -0.02 3.31 16 9 N -0.70 -19.71 5.47 -457.82 -2.50 -22.22 16 10 C 0.70 26.00 8.57 179.06 1.53 27.54 16 11 O -0.64 -28.90 15.91 -4.00 -0.06 -28.96 16 12 N -0.73 -26.89 4.96 -478.54 -2.37 -29.27 16 13 C 0.17 7.49 4.50 86.38 0.39 7.88 16 14 C 0.05 2.46 0.50 -52.93 -0.03 2.43 16 15 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 16 C -0.12 -5.43 8.08 71.98 0.58 -4.84 16 17 C -0.53 -28.48 8.01 25.60 0.21 -28.28 16 18 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 19 C 0.03 1.48 5.15 84.66 0.44 1.91 16 20 N -0.90 -48.43 9.35 21.45 0.20 -48.23 16 21 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.41 10.01 8.40 -92.71 -0.78 9.23 16 33 H 0.40 13.17 6.18 -92.70 -0.57 12.59 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 37 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.03 1.36 6.86 -2.38 -0.02 1.34 16 39 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.03 1.35 6.86 -2.39 -0.02 1.33 16 42 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -64.48 340.95 1.17 -63.31 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: -0.34 Total: 27.38 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.71 Total: 1.61 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -4.68 Total: -99.72 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -1.56 Total: -37.69 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -64.48 1.17 -63.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563088828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.089 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds