Wall clock time and date at job start Mon Mar 30 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.47276 * 2 1 4 4 C 1.42898 * 114.00065 * 179.97438 * 3 2 1 5 5 H 1.09005 * 115.54736 * 355.66840 * 4 3 2 6 6 C 1.52992 * 117.51818 * 141.37071 * 4 3 2 7 7 C 1.52996 * 117.49680 * 210.00321 * 4 3 2 8 8 H 1.09002 * 117.49617 * 144.97720 * 7 4 3 9 9 N 1.46496 * 117.50064 * 359.97053 * 7 4 3 10 10 C 1.34777 * 119.99901 * 154.99891 * 9 7 4 11 11 O 1.21589 * 120.00170 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00362 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00341 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47033 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47189 * 60.00068 * 14 13 12 16 16 C 1.52996 * 109.47729 * 299.99804 * 14 13 12 17 17 C 1.50709 * 109.47054 * 179.97438 * 14 13 12 18 18 H 1.07993 * 119.99859 * 4.92660 * 17 14 13 19 19 C 1.37875 * 119.99722 * 184.92114 * 17 14 13 20 20 N 1.31510 * 120.00482 * 351.63580 * 19 17 14 21 21 Si 1.86803 * 119.99441 * 171.63530 * 19 17 14 22 22 H 1.48494 * 109.47339 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46806 * 239.99749 * 21 19 17 24 24 H 1.48501 * 109.47140 * 120.00017 * 21 19 17 25 25 H 1.09000 * 109.47220 * 300.00015 * 1 2 3 26 26 H 1.09004 * 109.46872 * 59.99927 * 1 2 3 27 27 H 1.08998 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47220 * 239.99985 * 2 1 3 29 29 H 1.09004 * 109.46872 * 120.00073 * 2 1 3 30 30 H 1.09009 * 117.49990 * 359.97438 * 6 4 3 31 31 H 1.08998 * 117.50062 * 214.96929 * 6 4 3 32 32 H 0.97000 * 120.00268 * 335.00587 * 9 7 4 33 33 H 0.97000 * 119.99806 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.47336 * 60.00027 * 13 12 10 35 35 H 1.08996 * 109.47180 * 299.99959 * 13 12 10 36 36 H 1.08995 * 109.46960 * 172.91802 * 15 14 13 37 37 H 1.08995 * 109.46471 * 292.91569 * 15 14 13 38 38 H 1.08997 * 109.46636 * 52.91652 * 15 14 13 39 39 H 1.09003 * 109.47060 * 307.36067 * 16 14 13 40 40 H 1.09002 * 109.46833 * 67.35360 * 16 14 13 41 41 H 1.08992 * 109.47930 * 187.36057 * 16 14 13 42 42 H 0.96995 * 120.00079 * 5.71657 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9770 0.5196 0.0752 6 6 4.0523 2.5724 -0.8464 7 6 4.0421 2.6876 0.6793 8 1 4.9900 2.5546 1.2007 9 7 3.1221 3.6576 1.2782 10 6 3.5401 4.4502 2.2849 11 8 4.6810 4.3605 2.6957 12 7 2.6937 5.3423 2.8364 13 6 3.1483 6.2042 3.9303 14 6 2.0021 7.1172 4.3702 15 6 0.8253 6.2641 4.8484 16 6 1.5577 7.9831 3.1897 17 6 2.4696 8.0035 5.4960 18 1 3.5032 7.9802 5.8079 19 6 1.5775 8.8439 6.1275 20 7 0.3633 8.9959 5.6459 21 14 2.0939 9.7669 7.6673 22 1 3.5002 9.4258 8.0007 23 1 1.2093 9.3806 8.7959 24 1 1.9828 11.2284 7.4291 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3745 3.2183 -1.4047 31 1 5.0071 2.3639 -1.3289 32 1 2.2120 3.7294 0.9504 33 1 1.7834 5.4136 2.5089 34 1 3.9863 6.8123 3.5895 35 1 3.4652 5.5874 4.7712 36 1 0.0595 6.9098 5.2781 37 1 0.4070 5.7165 4.0040 38 1 1.1714 5.5586 5.6036 39 1 2.4236 8.4920 2.7662 40 1 1.0991 7.3519 2.4285 41 1 0.8341 8.7222 3.5332 42 1 0.0676 8.4556 4.8966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563088829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:09 Heat of formation + Delta-G solvation = -49.443529 kcal Electronic energy + Delta-G solvation = -21031.003058 eV Core-core repulsion = 17819.417956 eV Total energy + Delta-G solvation = -3211.585101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.86452 -38.65972 -36.89681 -35.81078 -33.52689 -32.42058 -30.98080 -30.20772 -26.01907 -25.92886 -24.41364 -23.19627 -22.38568 -21.91550 -20.55356 -18.87025 -18.46027 -17.39559 -16.59776 -15.85012 -15.76175 -15.04915 -14.99571 -14.39557 -13.84801 -13.71938 -13.40731 -13.11841 -12.91164 -12.68504 -12.64301 -12.52794 -12.25421 -11.64799 -11.51438 -11.33406 -11.24246 -11.13445 -10.86409 -10.59608 -10.58764 -10.10936 -9.85789 -9.84374 -9.52656 -9.46833 -8.72972 -8.52597 -8.23720 -8.16253 -6.24540 -4.08334 2.88329 3.24887 3.41431 3.45916 3.47897 3.62914 3.90311 4.47382 4.55999 4.65662 4.72551 4.75676 4.82162 5.02190 5.08823 5.20406 5.34248 5.50433 5.54919 5.59744 5.78087 5.83657 6.03240 6.22952 6.29287 6.60354 6.61206 6.65364 6.72989 6.84008 6.96380 6.98352 7.10219 7.14252 7.35334 7.53274 7.69321 8.22143 8.41909 8.44559 8.86471 8.99698 9.62152 11.01749 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.003559 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.850089 B = 7864.569378 C = 8386.075642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.005 3.995 5 H 0.115 0.885 6 C -0.204 4.204 7 C 0.113 3.887 8 H 0.142 0.858 9 N -0.716 5.716 10 C 0.702 3.298 11 O -0.599 6.599 12 N -0.734 5.734 13 C 0.159 3.841 14 C 0.041 3.959 15 C -0.145 4.145 16 C -0.143 4.143 17 C -0.586 4.586 18 H 0.053 0.947 19 C 0.026 3.974 20 N -0.918 5.918 21 Si 1.070 2.930 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.288 1.288 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.400 0.600 33 H 0.393 0.607 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.016 0.984 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.014 0.986 41 H 0.070 0.930 42 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -16.253 -12.760 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.274 6.274 4 C -0.055 4.055 5 H 0.132 0.868 6 C -0.243 4.243 7 C 0.004 3.996 8 H 0.159 0.841 9 N -0.370 5.370 10 C 0.402 3.598 11 O -0.479 6.479 12 N -0.388 5.388 13 C 0.036 3.964 14 C 0.040 3.960 15 C -0.203 4.203 16 C -0.201 4.201 17 C -0.624 4.624 18 H 0.072 0.928 19 C -0.178 4.178 20 N -0.559 5.559 21 Si 0.899 3.101 22 H -0.215 1.215 23 H -0.214 1.214 24 H -0.215 1.215 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.235 0.765 33 H 0.227 0.773 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.089 0.911 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.514 -15.004 -11.221 18.797 hybrid contribution -0.215 -1.352 -1.571 2.083 sum 1.299 -16.356 -12.791 20.804 Atomic orbital electron populations 1.21761 0.93555 1.02366 1.03349 1.22533 0.95622 0.83370 1.00146 1.87799 1.18550 1.26837 1.94184 1.23351 0.82413 0.94716 1.05008 0.86775 1.24041 1.02802 1.02107 0.95373 1.21863 0.95439 0.90181 0.92086 0.84087 1.44300 1.15191 1.39722 1.37789 1.16006 0.84989 0.79311 0.79531 1.90872 1.18374 1.72923 1.65687 1.45480 1.14591 1.39464 1.39246 1.21470 0.97979 0.90782 0.86200 1.18543 0.91109 0.92073 0.94288 1.22028 1.00591 0.99083 0.98558 1.22070 1.00808 1.00361 0.96865 1.21808 0.97540 1.25442 1.17619 0.92840 1.25667 0.94271 0.96441 1.01434 1.70812 1.19466 1.38815 1.26793 0.83531 0.75079 0.76070 0.75419 1.21493 1.21398 1.21484 0.91609 0.91818 0.91009 0.93270 0.93119 0.87933 0.87494 0.76531 0.77281 0.92777 0.92688 0.90956 0.96514 0.94423 0.94503 0.96663 0.91130 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.48 6.53 37.16 0.24 0.72 16 3 O -0.36 -3.79 10.03 -35.23 -0.35 -4.14 16 4 C 0.01 0.05 6.44 -26.74 -0.17 -0.12 16 5 H 0.11 0.85 7.93 -51.93 -0.41 0.43 16 6 C -0.20 -1.94 10.40 -26.73 -0.28 -2.22 16 7 C 0.11 1.38 6.43 -67.93 -0.44 0.94 16 8 H 0.14 1.85 7.40 -51.93 -0.38 1.46 16 9 N -0.72 -10.29 5.47 -58.68 -0.32 -10.61 16 10 C 0.70 13.00 8.57 -86.92 -0.74 12.26 16 11 O -0.60 -13.27 15.91 5.29 0.08 -13.19 16 12 N -0.73 -13.61 5.04 -65.23 -0.33 -13.94 16 13 C 0.16 3.49 4.50 -4.04 -0.02 3.47 16 14 C 0.04 0.96 0.50 -155.66 -0.08 0.88 16 15 C -0.14 -3.26 7.85 37.16 0.29 -2.97 16 16 C -0.14 -3.23 7.91 37.16 0.29 -2.93 16 17 C -0.59 -15.83 8.00 -34.44 -0.28 -16.10 16 18 H 0.05 1.48 7.76 -52.49 -0.41 1.07 16 19 C 0.03 0.70 5.07 -17.82 -0.09 0.61 16 20 N -0.92 -26.08 12.17 55.43 0.67 -25.40 16 21 Si 1.07 24.80 29.91 -169.99 -5.08 19.71 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.40 5.12 8.41 -40.82 -0.34 4.77 16 33 H 0.39 6.54 6.30 -40.82 -0.26 6.28 16 34 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.79 5.16 -51.93 -0.27 1.53 16 37 H 0.02 0.32 7.04 -51.93 -0.37 -0.05 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.01 0.29 7.05 -51.93 -0.37 -0.08 16 41 H 0.07 1.75 5.30 -51.93 -0.28 1.48 16 42 H 0.28 7.72 3.59 -40.82 -0.15 7.57 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -31.34 337.84 -7.79 -39.13 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.67 Total: 9.53 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.88 Total: -6.18 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.02 Total: -49.95 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.27 Total: -17.33 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.34 -7.79 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563088829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.312 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds