Wall clock time and date at job start Mon Mar 30 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.47276 * 2 1 4 4 C 1.42898 * 114.00065 * 179.97438 * 3 2 1 5 5 H 1.09005 * 115.54736 * 355.66840 * 4 3 2 6 6 C 1.52992 * 117.51818 * 141.37071 * 4 3 2 7 7 C 1.52996 * 117.49680 * 210.00321 * 4 3 2 8 8 H 1.09002 * 117.49617 * 144.97720 * 7 4 3 9 9 N 1.46496 * 117.50064 * 359.97053 * 7 4 3 10 10 C 1.34777 * 119.99901 * 154.99891 * 9 7 4 11 11 O 1.21589 * 120.00170 * 0.02562 * 10 9 7 12 12 N 1.34772 * 120.00362 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00341 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47033 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.47189 * 60.00068 * 14 13 12 16 16 C 1.52996 * 109.47729 * 299.99804 * 14 13 12 17 17 C 1.50709 * 109.47054 * 179.97438 * 14 13 12 18 18 H 1.07993 * 119.99859 * 4.92660 * 17 14 13 19 19 C 1.37875 * 119.99722 * 184.92114 * 17 14 13 20 20 N 1.31510 * 120.00482 * 351.63580 * 19 17 14 21 21 Si 1.86803 * 119.99441 * 171.63530 * 19 17 14 22 22 H 1.48494 * 109.47339 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46806 * 239.99749 * 21 19 17 24 24 H 1.48501 * 109.47140 * 120.00017 * 21 19 17 25 25 H 1.09000 * 109.47220 * 300.00015 * 1 2 3 26 26 H 1.09004 * 109.46872 * 59.99927 * 1 2 3 27 27 H 1.08998 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47220 * 239.99985 * 2 1 3 29 29 H 1.09004 * 109.46872 * 120.00073 * 2 1 3 30 30 H 1.09009 * 117.49990 * 359.97438 * 6 4 3 31 31 H 1.08998 * 117.50062 * 214.96929 * 6 4 3 32 32 H 0.97000 * 120.00268 * 335.00587 * 9 7 4 33 33 H 0.97000 * 119.99806 * 0.02562 * 12 10 9 34 34 H 1.09002 * 109.47336 * 60.00027 * 13 12 10 35 35 H 1.08996 * 109.47180 * 299.99959 * 13 12 10 36 36 H 1.08995 * 109.46960 * 172.91802 * 15 14 13 37 37 H 1.08995 * 109.46471 * 292.91569 * 15 14 13 38 38 H 1.08997 * 109.46636 * 52.91652 * 15 14 13 39 39 H 1.09003 * 109.47060 * 307.36067 * 16 14 13 40 40 H 1.09002 * 109.46833 * 67.35360 * 16 14 13 41 41 H 1.08992 * 109.47930 * 187.36057 * 16 14 13 42 42 H 0.96995 * 120.00079 * 5.71657 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 0.0006 5 1 3.9770 0.5196 0.0752 6 6 4.0523 2.5724 -0.8464 7 6 4.0421 2.6876 0.6793 8 1 4.9900 2.5546 1.2007 9 7 3.1221 3.6576 1.2782 10 6 3.5401 4.4502 2.2849 11 8 4.6810 4.3605 2.6957 12 7 2.6937 5.3423 2.8364 13 6 3.1483 6.2042 3.9303 14 6 2.0021 7.1172 4.3702 15 6 0.8253 6.2641 4.8484 16 6 1.5577 7.9831 3.1897 17 6 2.4696 8.0035 5.4960 18 1 3.5032 7.9802 5.8079 19 6 1.5775 8.8439 6.1275 20 7 0.3633 8.9959 5.6459 21 14 2.0939 9.7669 7.6673 22 1 3.5002 9.4258 8.0007 23 1 1.2093 9.3806 8.7959 24 1 1.9828 11.2284 7.4291 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.3745 3.2183 -1.4047 31 1 5.0071 2.3639 -1.3289 32 1 2.2120 3.7294 0.9504 33 1 1.7834 5.4136 2.5089 34 1 3.9863 6.8123 3.5895 35 1 3.4652 5.5874 4.7712 36 1 0.0595 6.9098 5.2781 37 1 0.4070 5.7165 4.0040 38 1 1.1714 5.5586 5.6036 39 1 2.4236 8.4920 2.7662 40 1 1.0991 7.3519 2.4285 41 1 0.8341 8.7222 3.5332 42 1 0.0676 8.4556 4.8966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563088829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:09 Heat of formation + Delta-G solvation = -70.533837 kcal Electronic energy + Delta-G solvation = -21031.917602 eV Core-core repulsion = 17819.417956 eV Total energy + Delta-G solvation = -3212.499646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21618 -39.65800 -38.60466 -36.78852 -35.25837 -33.70676 -32.12805 -31.51668 -27.86931 -27.80403 -26.29269 -23.79497 -23.27875 -22.95723 -21.85984 -20.74636 -19.96875 -18.46529 -18.29602 -16.95237 -16.54489 -16.44086 -16.18080 -15.83229 -15.60899 -15.09225 -14.88536 -14.55538 -14.37782 -14.08781 -13.61917 -13.37942 -13.30211 -13.20335 -12.97220 -12.81109 -12.53729 -12.43149 -12.35230 -12.09673 -11.92119 -11.81933 -11.71215 -11.46211 -11.35171 -10.53658 -10.38145 -10.23433 -10.10565 -9.47548 -8.38381 -6.23628 1.56861 1.63674 1.65267 1.81534 2.03701 2.51444 2.60997 2.95781 3.25026 3.27843 3.79647 3.93498 4.10529 4.17082 4.20443 4.35348 4.38289 4.46819 4.48052 4.51284 4.75701 4.82756 4.84741 4.87786 4.90941 4.98497 4.98715 5.03478 5.16792 5.20539 5.27545 5.45562 5.53469 5.64509 5.82878 5.99679 6.18245 6.26646 6.33181 6.75440 7.07551 7.51559 7.56012 8.89609 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.029565 B = 0.003559 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.850089 B = 7864.569378 C = 8386.075642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.376 6.376 4 C 0.023 3.977 5 H 0.141 0.859 6 C -0.185 4.185 7 C 0.073 3.927 8 H 0.128 0.872 9 N -0.700 5.700 10 C 0.700 3.300 11 O -0.639 6.639 12 N -0.727 5.727 13 C 0.177 3.823 14 C 0.035 3.965 15 C -0.134 4.134 16 C -0.133 4.133 17 C -0.604 4.604 18 H 0.038 0.962 19 C -0.015 4.015 20 N -0.938 5.938 21 Si 1.109 2.891 22 H -0.281 1.281 23 H -0.280 1.280 24 H -0.283 1.283 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.410 0.590 33 H 0.404 0.596 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.751 -17.780 -14.186 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.295 6.295 4 C -0.037 4.037 5 H 0.159 0.841 6 C -0.224 4.224 7 C -0.035 4.035 8 H 0.145 0.855 9 N -0.354 5.354 10 C 0.400 3.600 11 O -0.521 6.521 12 N -0.382 5.382 13 C 0.052 3.948 14 C 0.035 3.965 15 C -0.192 4.192 16 C -0.191 4.191 17 C -0.643 4.643 18 H 0.056 0.944 19 C -0.214 4.214 20 N -0.579 5.579 21 Si 0.933 3.067 22 H -0.206 1.206 23 H -0.206 1.206 24 H -0.209 1.209 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.246 0.754 33 H 0.241 0.759 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.117 -16.572 -12.705 20.912 hybrid contribution -0.105 -0.966 -1.204 1.547 sum 1.013 -17.537 -13.909 22.407 Atomic orbital electron populations 1.21783 0.93193 1.03421 1.02549 1.22736 0.95987 0.82348 1.01211 1.87777 1.18951 1.28621 1.94139 1.23456 0.82445 0.94953 1.02843 0.84136 1.24077 1.03795 1.01458 0.93059 1.22095 0.95369 0.92022 0.93983 0.85476 1.44135 1.15932 1.38936 1.36359 1.16112 0.84298 0.79488 0.80101 1.90844 1.20106 1.74087 1.67108 1.45162 1.15156 1.39248 1.38608 1.20990 0.96798 0.90397 0.86572 1.18542 0.91881 0.92233 0.93886 1.21879 0.99407 0.98499 0.99459 1.21912 1.00016 1.00037 0.97116 1.22117 0.96934 1.26290 1.18956 0.94405 1.26764 0.94029 0.97240 1.03417 1.70872 1.20060 1.39569 1.27402 0.83013 0.75306 0.75415 0.72959 1.20623 1.20635 1.20864 0.92934 0.92041 0.89085 0.91473 0.92717 0.88159 0.85186 0.75424 0.75943 0.94597 0.94492 0.93155 0.93289 0.95064 0.95175 0.93379 0.93367 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.05 0.71 6.53 71.98 0.47 1.18 16 3 O -0.38 -7.09 10.03 -148.98 -1.49 -8.58 16 4 C 0.02 0.38 6.44 30.59 0.20 0.57 16 5 H 0.14 1.59 7.93 -2.38 -0.02 1.57 16 6 C -0.19 -3.04 10.40 30.59 0.32 -2.72 16 7 C 0.07 1.68 6.43 44.99 0.29 1.96 16 8 H 0.13 3.29 7.40 -2.39 -0.02 3.27 16 9 N -0.70 -19.29 5.47 -457.82 -2.50 -21.80 16 10 C 0.70 25.66 8.57 179.06 1.53 27.20 16 11 O -0.64 -28.65 15.91 -4.00 -0.06 -28.72 16 12 N -0.73 -26.41 5.04 -478.55 -2.41 -28.82 16 13 C 0.18 7.85 4.50 86.38 0.39 8.24 16 14 C 0.04 1.67 0.50 -52.92 -0.03 1.64 16 15 C -0.13 -5.99 7.85 71.98 0.57 -5.42 16 16 C -0.13 -5.92 7.91 71.98 0.57 -5.35 16 17 C -0.60 -33.15 8.00 25.60 0.20 -32.95 16 18 H 0.04 2.14 7.76 -2.91 -0.02 2.11 16 19 C -0.01 -0.81 5.07 84.65 0.43 -0.38 16 20 N -0.94 -53.47 12.17 21.45 0.26 -53.20 16 21 Si 1.11 50.06 29.91 68.60 2.05 52.11 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.41 9.74 8.41 -92.71 -0.78 8.96 16 33 H 0.40 12.70 6.30 -92.71 -0.58 12.11 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 2.48 5.16 -2.39 -0.01 2.47 16 37 H 0.05 1.81 7.04 -2.39 -0.02 1.80 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.78 7.05 -2.39 -0.02 1.76 16 41 H 0.05 2.38 5.30 -2.39 -0.01 2.37 16 42 H 0.28 15.45 3.59 -92.71 -0.33 15.12 16 Total: -1.00 -68.04 337.84 1.61 -66.43 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.09 Total: 29.72 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 5.68 Total: -7.14 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -4.66 Total: -103.82 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.56 Total: -37.30 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Total: -68.04 1.61 -66.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563088829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.102 kcal (2) G-P(sol) polarization free energy of solvation -68.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds