Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46908 * 110.99866 * 2 1 4 4 C 1.52997 * 109.46843 * 66.04870 * 3 2 1 5 5 O 1.42902 * 109.47324 * 64.99724 * 4 3 2 6 6 C 1.42899 * 114.00025 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47208 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00476 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00196 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99865 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00336 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47146 * 90.00293 * 11 9 7 13 13 H 1.48495 * 109.47539 * 210.00469 * 11 9 7 14 14 H 1.48505 * 109.46985 * 330.00726 * 11 9 7 15 15 C 1.46901 * 111.00373 * 236.04786 * 2 1 3 16 16 H 1.09009 * 109.73598 * 64.35805 * 15 2 1 17 17 C 1.53348 * 109.60249 * 303.95705 * 15 2 1 18 18 C 1.53069 * 108.45717 * 172.72936 * 17 15 2 19 19 C 1.50181 * 109.89013 * 48.87742 * 18 17 15 20 20 O 1.21286 * 118.24194 * 162.44189 * 19 18 17 21 21 N 1.33349 * 123.50856 * 342.42146 * 19 18 17 22 22 C 1.46498 * 117.94385 * 182.22508 * 21 19 18 23 23 C 1.45752 * 124.10816 * 2.19415 * 21 19 18 24 24 H 1.09004 * 109.47233 * 183.94620 * 1 2 3 25 25 H 1.08996 * 109.47651 * 303.95511 * 1 2 3 26 26 H 1.09002 * 109.47391 * 63.95565 * 1 2 3 27 27 H 1.09005 * 109.46894 * 186.04516 * 3 2 1 28 28 H 1.08993 * 109.47141 * 306.04498 * 3 2 1 29 29 H 1.09000 * 109.47336 * 184.99807 * 4 3 2 30 30 H 1.09003 * 109.47059 * 304.99737 * 4 3 2 31 31 H 1.09002 * 109.47025 * 300.00341 * 6 5 4 32 32 H 1.09005 * 109.47529 * 59.99850 * 6 5 4 33 33 H 0.97006 * 120.00432 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.67626 * 52.97426 * 17 15 2 35 35 H 1.09004 * 109.67030 * 292.47730 * 17 15 2 36 36 H 1.08999 * 109.40300 * 169.00716 * 18 17 15 37 37 H 1.09007 * 109.40061 * 288.83972 * 18 17 15 38 38 H 1.08996 * 109.47424 * 359.97438 * 22 21 19 39 39 H 1.09004 * 109.47311 * 120.00112 * 22 21 19 40 40 H 1.09002 * 109.46800 * 239.99353 * 22 21 19 41 41 H 1.09002 * 109.29925 * 101.26163 * 23 21 19 42 42 H 1.08997 * 109.30698 * 220.84122 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 8 2.2955 1.3975 2.3979 6 6 2.0213 1.9626 3.6814 7 6 2.7695 1.1933 4.7393 8 1 3.3926 0.3567 4.4595 9 6 2.6596 1.5581 6.0644 10 7 1.9013 2.5771 6.4051 11 14 3.5865 0.6041 7.3759 12 1 4.9260 1.2129 7.5771 13 1 2.8262 0.6483 8.6506 14 1 3.7444 -0.8075 6.9424 15 6 1.9955 -0.7659 -1.1376 16 1 1.7129 -0.2794 -2.0713 17 6 1.4266 -2.1896 -1.1067 18 6 1.8428 -2.9059 -2.3938 19 6 3.3154 -2.7247 -2.6261 20 8 3.8710 -3.4750 -3.4003 21 7 4.0448 -1.7827 -2.0270 22 6 5.4629 -1.6838 -2.3808 23 6 3.5194 -0.8450 -1.0426 24 1 -0.3634 -1.0253 0.0707 25 1 -0.3634 0.5740 0.8524 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3445 -0.1082 28 1 1.5611 1.9274 -0.8309 29 1 1.9438 3.1011 1.2832 30 1 0.5531 2.0058 1.4691 31 1 2.3413 3.0045 3.6956 32 1 0.9510 1.9087 3.8811 33 1 1.8235 2.8336 7.3375 34 1 0.3391 -2.1491 -1.0445 35 1 1.8237 -2.7248 -0.2441 36 1 1.6183 -3.9688 -2.3056 37 1 1.2907 -2.4878 -3.2356 38 1 5.7062 -2.4445 -3.1226 39 1 5.6665 -0.6955 -2.7931 40 1 6.0713 -1.8380 -1.4896 41 1 3.8003 -1.1768 -0.0431 42 1 3.9408 0.1434 -1.2257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578664434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -70.588244 kcal Electronic energy + Delta-G solvation = -21331.778469 eV Core-core repulsion = 18119.276464 eV Total energy + Delta-G solvation = -3212.502005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70998 -38.42300 -36.57458 -35.37485 -33.67028 -32.63870 -29.70403 -29.28252 -27.10723 -26.81199 -25.20925 -24.26600 -22.30690 -21.75212 -20.58667 -18.82396 -17.02443 -16.69528 -16.35557 -16.09506 -15.69562 -15.49975 -14.78641 -14.68670 -14.36039 -14.18153 -13.81250 -13.59871 -13.46045 -12.96042 -12.77066 -12.43770 -12.22401 -12.02401 -11.83235 -11.75288 -11.55351 -11.32855 -11.12749 -10.90880 -10.82060 -10.64420 -10.40133 -9.99098 -9.74419 -9.08207 -8.85747 -8.79397 -8.25744 -8.12558 -6.09729 -4.10725 2.49802 2.83378 3.31015 3.36216 3.41808 3.75843 4.35474 4.42106 4.45821 4.57828 4.76962 4.88815 5.07692 5.14901 5.19878 5.25886 5.27037 5.35649 5.36596 5.43281 5.53592 5.60449 5.62768 5.64054 5.71942 5.79252 5.92313 5.99598 6.04131 6.11185 6.22118 6.26377 7.04106 7.06315 7.13055 7.30946 7.44421 7.81830 8.00645 8.17871 8.61959 9.03678 9.54206 11.01932 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.003918 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.413357 B = 7144.873630 C = 7696.587933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.518 5.518 3 C 0.055 3.945 4 C 0.066 3.934 5 O -0.380 6.380 6 C 0.195 3.805 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.056 3.944 10 N -0.900 5.900 11 Si 0.906 3.094 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.073 3.927 16 H 0.045 0.955 17 C -0.122 4.122 18 C -0.131 4.131 19 C 0.515 3.485 20 O -0.563 6.563 21 N -0.603 5.603 22 C 0.069 3.931 23 C 0.116 3.884 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.021 0.979 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.002 0.998 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -5.145 -17.517 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.242 5.242 3 C -0.072 4.072 4 C -0.012 4.012 5 O -0.299 6.299 6 C 0.120 3.880 7 C -0.549 4.549 8 H 0.085 0.915 9 C -0.145 4.145 10 N -0.540 5.540 11 Si 0.734 3.266 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.036 4.036 16 H 0.063 0.937 17 C -0.159 4.159 18 C -0.171 4.171 19 C 0.304 3.696 20 O -0.443 6.443 21 N -0.336 5.336 22 C -0.073 4.073 23 C -0.007 4.007 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.721 -5.807 -17.327 18.289 hybrid contribution -0.089 0.512 0.228 0.567 sum -0.811 -5.295 -17.100 17.919 Atomic orbital electron populations 1.22507 0.87008 1.02584 1.00610 1.61832 1.07960 1.13807 1.40643 1.22264 1.00988 0.87796 0.96178 1.22253 0.96290 0.94594 0.88065 1.87936 1.69583 1.56897 1.15518 1.20170 0.95584 0.93494 0.78722 1.21052 1.28089 1.15318 0.90415 0.91537 1.24940 0.95684 0.95396 0.98495 1.69961 1.39009 1.27094 1.17916 0.86361 0.79522 0.80323 0.80433 1.20523 1.21135 1.19604 1.21794 0.93967 0.94999 0.92833 0.93692 1.21841 1.02135 0.94494 0.97475 1.21636 0.91987 1.03690 0.99816 1.20232 0.89880 0.79655 0.79817 1.90683 1.72111 1.44180 1.37340 1.47170 1.10819 1.33407 1.42213 1.21782 0.80716 1.02836 1.01998 1.21508 0.93556 0.92837 0.92781 0.90926 0.90370 0.96062 0.89908 0.94191 0.94265 0.94415 0.98056 0.97925 0.92726 0.89915 0.89826 0.87863 0.88480 0.89098 0.92200 0.91855 0.89471 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.94 60.06 0.54 0.78 16 2 N -0.52 -6.80 4.58 -234.73 -1.08 -7.88 16 3 C 0.06 0.74 5.17 -3.82 -0.02 0.72 16 4 C 0.07 1.15 6.00 37.16 0.22 1.37 16 5 O -0.38 -8.83 10.27 -35.23 -0.36 -9.19 16 6 C 0.19 5.25 5.69 36.00 0.20 5.46 16 7 C -0.51 -14.89 9.43 -34.44 -0.32 -15.21 16 8 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 11 Si 0.91 21.75 29.54 -169.99 -5.02 16.72 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.07 0.79 2.00 -67.59 -0.14 0.65 16 16 H 0.05 0.46 8.12 -51.92 -0.42 0.03 16 17 C -0.12 -1.17 5.17 -26.52 -0.14 -1.31 16 18 C -0.13 -1.23 6.03 -28.10 -0.17 -1.40 16 19 C 0.52 6.50 7.47 -11.87 -0.09 6.41 16 20 O -0.56 -8.96 15.95 5.55 0.09 -8.87 16 21 N -0.60 -6.97 3.21 -182.88 -0.59 -7.56 16 22 C 0.07 0.70 10.48 59.85 0.63 1.33 16 23 C 0.12 1.30 5.22 -4.50 -0.02 1.27 16 24 H 0.07 0.75 6.10 -51.93 -0.32 0.43 16 25 H 0.08 1.02 6.21 -51.93 -0.32 0.70 16 26 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.08 1.09 6.07 -51.93 -0.32 0.78 16 28 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.64 6.26 -51.93 -0.33 0.31 16 31 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 0.70 6.00 -51.93 -0.31 0.38 16 35 H 0.08 0.91 8.13 -51.93 -0.42 0.49 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.02 6.59 -51.93 -0.34 0.68 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.08 0.79 6.68 -51.93 -0.35 0.45 16 LS Contribution 332.89 15.07 5.02 5.02 Total: -1.00 -33.35 332.89 -7.50 -40.86 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -6.89 Total: -4.62 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 0.60 Total: 1.56 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: -0.93 Total: -41.48 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.27 Total: -18.06 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.35 -7.50 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578664434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.733 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds