Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46908 * 110.99866 * 2 1 4 4 C 1.52997 * 109.46843 * 66.04870 * 3 2 1 5 5 O 1.42902 * 109.47324 * 64.99724 * 4 3 2 6 6 C 1.42899 * 114.00025 * 180.02562 * 5 4 3 7 7 C 1.50692 * 109.47208 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00476 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00196 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99865 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00336 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47146 * 90.00293 * 11 9 7 13 13 H 1.48495 * 109.47539 * 210.00469 * 11 9 7 14 14 H 1.48505 * 109.46985 * 330.00726 * 11 9 7 15 15 C 1.46901 * 111.00373 * 236.04786 * 2 1 3 16 16 H 1.09009 * 109.73598 * 64.35805 * 15 2 1 17 17 C 1.53348 * 109.60249 * 303.95705 * 15 2 1 18 18 C 1.53069 * 108.45717 * 172.72936 * 17 15 2 19 19 C 1.50181 * 109.89013 * 48.87742 * 18 17 15 20 20 O 1.21286 * 118.24194 * 162.44189 * 19 18 17 21 21 N 1.33349 * 123.50856 * 342.42146 * 19 18 17 22 22 C 1.46498 * 117.94385 * 182.22508 * 21 19 18 23 23 C 1.45752 * 124.10816 * 2.19415 * 21 19 18 24 24 H 1.09004 * 109.47233 * 183.94620 * 1 2 3 25 25 H 1.08996 * 109.47651 * 303.95511 * 1 2 3 26 26 H 1.09002 * 109.47391 * 63.95565 * 1 2 3 27 27 H 1.09005 * 109.46894 * 186.04516 * 3 2 1 28 28 H 1.08993 * 109.47141 * 306.04498 * 3 2 1 29 29 H 1.09000 * 109.47336 * 184.99807 * 4 3 2 30 30 H 1.09003 * 109.47059 * 304.99737 * 4 3 2 31 31 H 1.09002 * 109.47025 * 300.00341 * 6 5 4 32 32 H 1.09005 * 109.47529 * 59.99850 * 6 5 4 33 33 H 0.97006 * 120.00432 * 179.97438 * 10 9 7 34 34 H 1.09002 * 109.67626 * 52.97426 * 17 15 2 35 35 H 1.09004 * 109.67030 * 292.47730 * 17 15 2 36 36 H 1.08999 * 109.40300 * 169.00716 * 18 17 15 37 37 H 1.09007 * 109.40061 * 288.83972 * 18 17 15 38 38 H 1.08996 * 109.47424 * 359.97438 * 22 21 19 39 39 H 1.09004 * 109.47311 * 120.00112 * 22 21 19 40 40 H 1.09002 * 109.46800 * 239.99353 * 22 21 19 41 41 H 1.09002 * 109.29925 * 101.26163 * 23 21 19 42 42 H 1.08997 * 109.30698 * 220.84122 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 8 2.2955 1.3975 2.3979 6 6 2.0213 1.9626 3.6814 7 6 2.7695 1.1933 4.7393 8 1 3.3926 0.3567 4.4595 9 6 2.6596 1.5581 6.0644 10 7 1.9013 2.5771 6.4051 11 14 3.5865 0.6041 7.3759 12 1 4.9260 1.2129 7.5771 13 1 2.8262 0.6483 8.6506 14 1 3.7444 -0.8075 6.9424 15 6 1.9955 -0.7659 -1.1376 16 1 1.7129 -0.2794 -2.0713 17 6 1.4266 -2.1896 -1.1067 18 6 1.8428 -2.9059 -2.3938 19 6 3.3154 -2.7247 -2.6261 20 8 3.8710 -3.4750 -3.4003 21 7 4.0448 -1.7827 -2.0270 22 6 5.4629 -1.6838 -2.3808 23 6 3.5194 -0.8450 -1.0426 24 1 -0.3634 -1.0253 0.0707 25 1 -0.3634 0.5740 0.8524 26 1 -0.3634 0.4512 -0.9233 27 1 3.0797 1.3445 -0.1082 28 1 1.5611 1.9274 -0.8309 29 1 1.9438 3.1011 1.2832 30 1 0.5531 2.0058 1.4691 31 1 2.3413 3.0045 3.6956 32 1 0.9510 1.9087 3.8811 33 1 1.8235 2.8336 7.3375 34 1 0.3391 -2.1491 -1.0445 35 1 1.8237 -2.7248 -0.2441 36 1 1.6183 -3.9688 -2.3056 37 1 1.2907 -2.4878 -3.2356 38 1 5.7062 -2.4445 -3.1226 39 1 5.6665 -0.6955 -2.7931 40 1 6.0713 -1.8380 -1.4896 41 1 3.8003 -1.1768 -0.0431 42 1 3.9408 0.1434 -1.2257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578664434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -94.632410 kcal Electronic energy + Delta-G solvation = -21332.821102 eV Core-core repulsion = 18119.276464 eV Total energy + Delta-G solvation = -3213.544638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.63797 -39.51915 -38.15961 -36.45642 -34.96126 -34.40241 -30.96316 -30.27206 -28.92573 -27.80665 -26.29785 -25.15485 -24.41827 -22.80484 -21.63157 -19.70688 -18.58841 -17.96973 -17.63441 -17.31177 -17.08663 -16.68493 -16.32233 -15.81692 -15.66633 -15.44299 -15.01274 -14.63537 -14.55107 -14.33705 -13.67627 -13.62306 -13.55148 -13.21382 -12.98258 -12.83937 -12.72670 -12.66658 -12.61276 -12.55320 -12.15141 -11.93825 -11.75657 -11.57598 -11.20417 -10.81610 -10.69366 -10.12006 -9.79857 -9.17592 -8.29121 -6.40299 1.41678 1.43875 1.54696 1.56060 1.95783 2.37071 2.83981 3.05019 3.27903 3.57625 3.61597 3.76926 4.03683 4.15767 4.26043 4.30457 4.38644 4.44051 4.48513 4.54656 4.59151 4.61035 4.67635 4.74507 4.82131 4.86100 4.88408 4.90891 4.98107 5.01755 5.17067 5.23730 5.28216 5.34704 5.59033 6.01278 6.09960 6.13581 6.39704 6.61280 6.91021 7.06294 7.32099 8.83178 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.003918 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.413357 B = 7144.873630 C = 7696.587933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.544 5.544 3 C 0.064 3.936 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.210 3.790 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.979 3.021 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.265 1.265 15 C 0.078 3.922 16 H 0.063 0.937 17 C -0.115 4.115 18 C -0.122 4.122 19 C 0.507 3.493 20 O -0.603 6.603 21 N -0.603 5.603 22 C 0.066 3.934 23 C 0.119 3.881 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.040 0.960 31 H -0.017 1.017 32 H -0.018 1.018 33 H 0.270 0.730 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -5.481 -18.098 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.269 5.269 3 C -0.063 4.063 4 C -0.022 4.022 5 O -0.312 6.312 6 C 0.135 3.865 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.191 4.191 10 N -0.571 5.571 11 Si 0.802 3.198 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.190 1.190 15 C -0.031 4.031 16 H 0.081 0.919 17 C -0.153 4.153 18 C -0.162 4.162 19 C 0.297 3.703 20 O -0.486 6.486 21 N -0.335 5.335 22 C -0.077 4.077 23 C -0.003 4.003 24 H 0.102 0.898 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.000 1.000 32 H 0.000 1.000 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.889 -6.123 -17.920 18.958 hybrid contribution -0.061 0.665 0.353 0.755 sum -0.950 -5.459 -17.567 18.420 Atomic orbital electron populations 1.22496 0.86129 1.03200 1.00765 1.61750 1.09008 1.13738 1.42408 1.22166 1.01391 0.88386 0.94407 1.22623 0.96190 0.95281 0.88092 1.87890 1.70494 1.57562 1.15287 1.19755 0.93859 0.92324 0.80557 1.21382 1.28982 1.15838 0.91815 0.92138 1.25907 0.96277 0.96205 1.00724 1.70065 1.39908 1.28304 1.18869 0.85240 0.78384 0.78887 0.77254 1.19342 1.20046 1.18980 1.21788 0.93312 0.95348 0.92626 0.91918 1.21791 1.03055 0.93571 0.96885 1.21638 0.89812 1.04408 1.00348 1.20850 0.91171 0.79092 0.79175 1.90667 1.73129 1.45590 1.39199 1.47274 1.11331 1.33111 1.41765 1.21870 0.80270 1.03519 1.02014 1.21464 0.94304 0.93042 0.91532 0.89795 0.92596 0.93751 0.89758 0.90973 0.93705 0.94151 0.99979 1.00018 0.92155 0.88129 0.91535 0.87036 0.86315 0.90444 0.90223 0.91278 0.91630 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.94 127.69 1.14 1.59 16 2 N -0.54 -13.28 4.58 -896.56 -4.11 -17.39 16 3 C 0.06 1.60 5.17 86.30 0.45 2.04 16 4 C 0.06 1.90 6.00 71.98 0.43 2.34 16 5 O -0.39 -18.52 10.27 -148.98 -1.53 -20.05 16 6 C 0.21 11.68 5.69 71.23 0.41 12.08 16 7 C -0.54 -32.15 9.43 25.60 0.24 -31.91 16 8 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.01 0.41 5.46 84.66 0.46 0.87 16 10 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 11 Si 0.98 44.29 29.54 68.60 2.03 46.32 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 15 C 0.08 1.49 2.00 44.99 0.09 1.58 16 16 H 0.06 1.03 8.12 -2.38 -0.02 1.01 16 17 C -0.12 -1.97 5.17 30.73 0.16 -1.81 16 18 C -0.12 -2.03 6.03 29.71 0.18 -1.85 16 19 C 0.51 12.22 7.47 87.72 0.66 12.87 16 20 O -0.60 -19.01 15.95 -3.05 -0.05 -19.05 16 21 N -0.60 -13.27 3.21 -851.68 -2.73 -16.00 16 22 C 0.07 1.28 10.48 127.77 1.34 2.62 16 23 C 0.12 2.50 5.22 86.48 0.45 2.95 16 24 H 0.08 1.54 6.10 -2.38 -0.01 1.52 16 25 H 0.06 1.42 6.21 -2.39 -0.01 1.40 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 2.07 6.07 -2.38 -0.01 2.06 16 28 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.37 6.26 -2.39 -0.01 1.35 16 31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 33 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 34 H 0.10 1.38 6.00 -2.39 -0.01 1.37 16 35 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 1.74 6.59 -2.39 -0.02 1.73 16 39 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.09 1.64 6.68 -2.39 -0.02 1.63 16 Total: -1.00 -72.49 332.89 0.88 -71.61 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.99 Total: 6.73 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 6.00 Total: 3.38 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -6.56 Total: -88.93 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.58 Total: -39.11 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.49 0.88 -71.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578664434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.023 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds