Wall clock time and date at job start Mon Mar 30 2020 01:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00112 * 2 1 4 4 C 1.53000 * 109.47293 * 293.95545 * 3 2 1 5 5 H 1.08996 * 109.47350 * 59.99919 * 4 3 2 6 6 O 1.42901 * 109.47059 * 299.99924 * 4 3 2 7 7 C 1.53001 * 109.47145 * 180.02562 * 4 3 2 8 8 N 1.46903 * 109.47069 * 185.00142 * 7 4 3 9 9 C 1.47957 * 111.00079 * 169.99783 * 8 7 4 10 10 C 1.53937 * 86.18208 * 222.41605 * 9 8 7 11 11 O 1.42896 * 113.73148 * 269.25755 * 10 9 8 12 12 C 1.50694 * 113.73443 * 138.07827 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47958 * 111.00224 * 70.63461 * 8 7 4 21 21 C 1.46899 * 111.00063 * 123.95796 * 2 1 3 22 22 C 1.52998 * 117.49934 * 124.66433 * 21 2 1 23 23 C 1.52997 * 117.49961 * 56.03962 * 21 2 1 24 24 H 1.08997 * 109.47370 * 59.99312 * 1 2 3 25 25 H 1.08994 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47159 * 300.00221 * 1 2 3 27 27 H 1.09008 * 109.46850 * 173.95887 * 3 2 1 28 28 H 1.08996 * 109.47576 * 53.95599 * 3 2 1 29 29 H 0.96697 * 114.00477 * 299.99949 * 6 4 3 30 30 H 1.08997 * 109.47366 * 65.00009 * 7 4 3 31 31 H 1.08999 * 109.46999 * 304.99298 * 7 4 3 32 32 H 1.08999 * 113.76060 * 108.09601 * 9 8 7 33 33 H 1.09001 * 113.85944 * 336.74419 * 9 8 7 34 34 H 0.96709 * 114.00030 * 178.09403 * 11 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.09003 * 113.76031 * 23.26533 * 20 8 7 37 37 H 1.08999 * 113.76380 * 251.90073 * 20 8 7 38 38 H 1.09000 * 115.54962 * 270.37217 * 21 2 1 39 39 H 1.09000 * 117.50275 * 0.02562 * 22 21 2 40 40 H 1.09004 * 117.49732 * 145.02175 * 22 21 2 41 41 H 1.08999 * 117.49853 * 214.98295 * 23 21 2 42 42 H 1.09000 * 117.50160 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 1 0.5472 2.0845 -1.4265 6 8 2.2008 1.3287 -2.4076 7 6 2.1803 3.4856 -1.3185 8 7 1.7298 4.1831 -2.5303 9 6 2.0364 5.6286 -2.4550 10 6 0.6313 5.8523 -3.0427 11 8 0.6076 5.9098 -4.4703 12 6 -0.1230 6.9856 -2.3966 13 1 0.3335 7.5528 -1.5989 14 6 -1.3962 7.2984 -2.8237 15 7 -1.9519 6.6080 -3.7954 16 14 -2.3315 8.7027 -2.0223 17 1 -3.6671 8.8344 -2.6580 18 1 -2.4978 8.4235 -0.5733 19 1 -1.5730 9.9671 -2.1989 20 6 0.2791 4.4675 -2.4702 21 6 1.9954 -0.7661 1.1375 22 6 2.9692 -1.9058 0.8316 23 6 1.5408 -2.2198 1.2812 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.0798 1.3443 0.1082 28 1 1.5612 1.9273 0.8309 29 1 3.1651 1.2641 -2.3764 30 1 3.2697 3.4562 -1.2999 31 1 1.8160 4.0150 -0.4380 32 1 2.8441 5.9413 -3.1168 33 1 2.1515 6.0025 -1.4376 34 1 -0.2771 6.0211 -4.8448 35 1 -2.8477 6.8279 -4.0957 36 1 -0.1204 4.5000 -1.4565 37 1 -0.3173 3.8524 -3.1440 38 1 2.1579 -0.1968 2.0528 39 1 3.2196 -2.0870 -0.2137 40 1 3.7727 -2.0865 1.5456 41 1 1.4047 -2.6071 2.2909 42 1 0.8515 -2.6081 0.5314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581542818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:39 Heat of formation + Delta-G solvation = -26.674146 kcal Electronic energy + Delta-G solvation = -21448.917142 eV Core-core repulsion = 18238.319395 eV Total energy + Delta-G solvation = -3210.597747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37752 -38.56944 -36.74347 -34.14116 -33.94487 -32.05019 -30.38273 -27.82792 -26.35179 -25.17560 -24.83129 -22.47794 -22.19476 -20.79798 -20.42969 -18.58430 -17.36230 -16.70358 -16.10578 -15.62809 -15.22864 -15.02097 -14.92841 -14.44778 -13.91882 -13.87431 -13.65160 -13.39657 -12.82161 -12.47858 -12.07197 -11.95443 -11.82947 -11.58234 -11.47170 -11.39652 -11.09261 -10.88524 -10.80532 -10.71234 -10.55980 -10.39381 -10.28714 -10.01139 -9.49292 -9.26378 -8.62702 -8.36281 -8.17904 -7.75107 -6.25112 -4.35493 3.20200 3.26043 3.28151 3.56294 3.61740 4.25215 4.61979 4.71167 4.75565 4.82819 4.95590 5.02259 5.04959 5.12361 5.28641 5.42850 5.48475 5.51703 5.55252 5.59868 5.62899 5.78228 5.90497 5.95476 6.01194 6.02456 6.09766 6.24242 6.34861 6.46966 6.71332 6.90465 7.01416 7.06608 7.21045 7.37349 7.77120 7.97434 8.02241 8.11287 8.65844 9.34471 9.68908 10.80463 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028811 B = 0.003922 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.623732 B = 7138.093811 C = 7565.132814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.503 5.503 3 C 0.027 3.973 4 C 0.121 3.879 5 H 0.097 0.903 6 O -0.535 6.535 7 C -0.011 4.011 8 N -0.465 5.465 9 C 0.005 3.995 10 C 0.246 3.754 11 O -0.571 6.571 12 C -0.540 4.540 13 H 0.064 0.936 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.903 3.097 17 H -0.284 1.284 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.014 4.014 21 C 0.002 3.998 22 C -0.163 4.163 23 C -0.176 4.176 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.024 0.976 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.365 0.635 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.389 0.611 35 H 0.271 0.729 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 -12.743 10.100 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.226 5.226 3 C -0.102 4.102 4 C 0.061 3.939 5 H 0.114 0.886 6 O -0.338 6.338 7 C -0.141 4.141 8 N -0.187 5.187 9 C -0.123 4.123 10 C 0.205 3.795 11 O -0.383 6.383 12 C -0.578 4.578 13 H 0.082 0.918 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.730 3.270 17 H -0.210 1.210 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.143 4.143 21 C -0.107 4.107 22 C -0.201 4.201 23 C -0.213 4.213 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.210 0.790 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.392 -13.517 8.921 17.411 hybrid contribution -1.164 1.679 2.283 3.063 sum 5.227 -11.838 11.204 17.117 Atomic orbital electron populations 1.22438 0.86992 1.02088 1.00999 1.61691 1.07885 1.13279 1.39768 1.22883 1.00516 0.88400 0.98405 1.21812 0.98892 0.88527 0.84716 0.88565 1.86633 1.24415 1.75903 1.46801 1.23298 1.00385 0.95906 0.94557 1.68593 1.08826 1.09922 1.31365 1.24169 1.00539 0.88349 0.99274 1.19704 0.89201 0.90281 0.80357 1.86045 1.36706 1.95750 1.19788 1.21631 0.99952 1.16809 1.19407 0.91813 1.25056 0.97128 0.96244 0.94634 1.69347 1.16257 1.40163 1.27944 0.86480 0.78791 0.82280 0.79429 1.20980 1.20145 1.19957 1.24688 0.88481 1.01255 0.99890 1.22446 1.04685 0.89759 0.93785 1.23060 0.92512 1.01763 1.02771 1.23043 0.98671 0.97187 1.02433 0.90599 0.91387 0.95737 0.90492 0.94117 0.78951 0.91386 0.94210 0.90719 0.91989 0.75653 0.91818 0.92643 0.90939 0.89635 0.88018 0.89027 0.88893 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.17 60.06 0.55 0.82 16 2 N -0.50 -6.15 4.78 -234.90 -1.12 -7.27 16 3 C 0.03 0.33 4.58 -3.83 -0.02 0.31 16 4 C 0.12 1.84 2.89 -26.73 -0.08 1.76 16 5 H 0.10 1.66 5.83 -51.93 -0.30 1.35 16 6 O -0.53 -8.69 13.15 -35.23 -0.46 -9.15 16 7 C -0.01 -0.19 4.45 -3.82 -0.02 -0.21 16 8 N -0.46 -9.80 6.21 -238.24 -1.48 -11.28 16 9 C 0.01 0.12 7.36 -2.77 -0.02 0.10 16 10 C 0.25 6.32 1.44 -90.84 -0.13 6.19 16 11 O -0.57 -15.81 13.48 -35.23 -0.47 -16.29 16 12 C -0.54 -14.50 8.62 -34.44 -0.30 -14.80 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.07 1.89 5.40 -17.82 -0.10 1.80 16 15 N -0.90 -24.22 11.09 55.43 0.61 -23.61 16 16 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 C -0.01 -0.33 6.43 -2.77 -0.02 -0.35 16 21 C 0.00 0.02 5.27 -67.72 -0.36 -0.33 16 22 C -0.16 -1.47 10.46 -26.73 -0.28 -1.75 16 23 C -0.18 -1.55 9.72 -26.73 -0.26 -1.81 16 24 H 0.08 1.01 6.47 -51.93 -0.34 0.68 16 25 H 0.07 0.73 6.76 -51.93 -0.35 0.38 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.86 8.08 -51.92 -0.42 0.44 16 28 H 0.04 0.50 8.12 -51.93 -0.42 0.07 16 29 H 0.36 4.68 9.04 45.56 0.41 5.09 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.04 0.65 7.69 -51.93 -0.40 0.26 16 32 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.06 1.28 7.75 -51.93 -0.40 0.87 16 34 H 0.39 10.89 6.46 45.56 0.29 11.19 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.06 1.27 7.73 -51.93 -0.40 0.87 16 37 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.91 7.25 -51.93 -0.38 0.54 16 LS Contribution 337.74 15.07 5.09 5.09 Total: -1.00 -29.19 337.74 -9.50 -38.69 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -5.63 Total: 16.69 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.02 Total: -8.27 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -1.99 Total: -42.16 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.94 Total: -25.44 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.19 -9.50 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581542818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.016 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds