Wall clock time and date at job start Mon Mar 30 2020 01:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 111.00112 * 2 1 4 4 C 1.53000 * 109.47293 * 293.95545 * 3 2 1 5 5 H 1.08996 * 109.47350 * 59.99919 * 4 3 2 6 6 O 1.42901 * 109.47059 * 299.99924 * 4 3 2 7 7 C 1.53001 * 109.47145 * 180.02562 * 4 3 2 8 8 N 1.46903 * 109.47069 * 185.00142 * 7 4 3 9 9 C 1.47957 * 111.00079 * 169.99783 * 8 7 4 10 10 C 1.53937 * 86.18208 * 222.41605 * 9 8 7 11 11 O 1.42896 * 113.73148 * 269.25755 * 10 9 8 12 12 C 1.50694 * 113.73443 * 138.07827 * 10 9 8 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 10 9 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.47958 * 111.00224 * 70.63461 * 8 7 4 21 21 C 1.46899 * 111.00063 * 123.95796 * 2 1 3 22 22 C 1.52998 * 117.49934 * 124.66433 * 21 2 1 23 23 C 1.52997 * 117.49961 * 56.03962 * 21 2 1 24 24 H 1.08997 * 109.47370 * 59.99312 * 1 2 3 25 25 H 1.08994 * 109.47478 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47159 * 300.00221 * 1 2 3 27 27 H 1.09008 * 109.46850 * 173.95887 * 3 2 1 28 28 H 1.08996 * 109.47576 * 53.95599 * 3 2 1 29 29 H 0.96697 * 114.00477 * 299.99949 * 6 4 3 30 30 H 1.08997 * 109.47366 * 65.00009 * 7 4 3 31 31 H 1.08999 * 109.46999 * 304.99298 * 7 4 3 32 32 H 1.08999 * 113.76060 * 108.09601 * 9 8 7 33 33 H 1.09001 * 113.85944 * 336.74419 * 9 8 7 34 34 H 0.96709 * 114.00030 * 178.09403 * 11 10 9 35 35 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 36 36 H 1.09003 * 113.76031 * 23.26533 * 20 8 7 37 37 H 1.08999 * 113.76380 * 251.90073 * 20 8 7 38 38 H 1.09000 * 115.54962 * 270.37217 * 21 2 1 39 39 H 1.09000 * 117.50275 * 0.02562 * 22 21 2 40 40 H 1.09004 * 117.49732 * 145.02175 * 22 21 2 41 41 H 1.08999 * 117.49853 * 214.98295 * 23 21 2 42 42 H 1.09000 * 117.50160 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 1 0.5472 2.0845 -1.4265 6 8 2.2008 1.3287 -2.4076 7 6 2.1803 3.4856 -1.3185 8 7 1.7298 4.1831 -2.5303 9 6 2.0364 5.6286 -2.4550 10 6 0.6313 5.8523 -3.0427 11 8 0.6076 5.9098 -4.4703 12 6 -0.1230 6.9856 -2.3966 13 1 0.3335 7.5528 -1.5989 14 6 -1.3962 7.2984 -2.8237 15 7 -1.9519 6.6080 -3.7954 16 14 -2.3315 8.7027 -2.0223 17 1 -3.6671 8.8344 -2.6580 18 1 -2.4978 8.4235 -0.5733 19 1 -1.5730 9.9671 -2.1989 20 6 0.2791 4.4675 -2.4702 21 6 1.9954 -0.7661 1.1375 22 6 2.9692 -1.9058 0.8316 23 6 1.5408 -2.2198 1.2812 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 3.0798 1.3443 0.1082 28 1 1.5612 1.9273 0.8309 29 1 3.1651 1.2641 -2.3764 30 1 3.2697 3.4562 -1.2999 31 1 1.8160 4.0150 -0.4380 32 1 2.8441 5.9413 -3.1168 33 1 2.1515 6.0025 -1.4376 34 1 -0.2771 6.0211 -4.8448 35 1 -2.8477 6.8279 -4.0957 36 1 -0.1204 4.5000 -1.4565 37 1 -0.3173 3.8524 -3.1440 38 1 2.1579 -0.1968 2.0528 39 1 3.2196 -2.0870 -0.2137 40 1 3.7727 -2.0865 1.5456 41 1 1.4047 -2.6071 2.2909 42 1 0.8515 -2.6081 0.5314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581542818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:39 Heat of formation + Delta-G solvation = -52.339847 kcal Electronic energy + Delta-G solvation = -21450.030091 eV Core-core repulsion = 18238.319395 eV Total energy + Delta-G solvation = -3211.710695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95934 -39.65611 -37.93449 -36.01510 -34.90889 -34.11402 -31.78816 -29.28149 -27.76395 -26.96568 -26.27081 -23.68421 -23.10019 -22.09158 -21.29044 -20.47696 -19.27752 -17.75414 -17.35876 -17.11419 -16.73964 -16.65465 -16.13926 -15.74989 -15.60227 -15.20579 -14.89144 -14.58577 -14.07432 -13.94153 -13.74240 -13.44668 -13.34867 -12.93155 -12.78660 -12.62748 -12.49982 -12.45209 -12.26625 -12.21618 -12.02605 -11.79265 -11.43740 -11.17102 -11.10661 -10.73546 -10.59689 -10.12653 -9.52362 -9.26167 -8.24777 -6.43693 1.41628 1.43426 1.51614 2.36193 2.65142 2.86943 2.95764 3.17632 3.64389 3.72012 4.00306 4.01378 4.05670 4.09255 4.13798 4.24088 4.28834 4.37657 4.40760 4.51677 4.53309 4.61425 4.67466 4.70240 4.79400 4.83575 4.90188 4.96004 5.08974 5.11580 5.13278 5.33152 5.39509 5.49885 5.74033 5.96683 5.98371 6.15721 6.34285 6.61706 7.01909 7.29499 7.53246 8.79694 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.028811 B = 0.003922 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.623732 B = 7138.093811 C = 7565.132814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.516 5.516 3 C 0.038 3.962 4 C 0.129 3.871 5 H 0.070 0.930 6 O -0.555 6.555 7 C -0.010 4.010 8 N -0.471 5.471 9 C 0.016 3.984 10 C 0.217 3.783 11 O -0.586 6.586 12 C -0.563 4.563 13 H 0.066 0.934 14 C 0.026 3.974 15 N -0.919 5.919 16 Si 0.968 3.032 17 H -0.281 1.281 18 H -0.268 1.268 19 H -0.272 1.272 20 C 0.000 4.000 21 C -0.012 4.012 22 C -0.158 4.158 23 C -0.169 4.169 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.028 0.972 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.380 0.620 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.382 0.618 35 H 0.274 0.726 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.027 -13.117 12.100 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.239 5.239 3 C -0.091 4.091 4 C 0.068 3.932 5 H 0.088 0.912 6 O -0.360 6.360 7 C -0.140 4.140 8 N -0.194 5.194 9 C -0.113 4.113 10 C 0.176 3.824 11 O -0.397 6.397 12 C -0.601 4.601 13 H 0.084 0.916 14 C -0.174 4.174 15 N -0.560 5.560 16 Si 0.793 3.207 17 H -0.206 1.206 18 H -0.193 1.193 19 H -0.197 1.197 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.195 4.195 23 C -0.206 4.206 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.112 0.888 28 H 0.063 0.937 29 H 0.228 0.772 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.236 0.764 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.307 -13.905 10.932 19.137 hybrid contribution -1.402 1.732 1.630 2.761 sum 5.905 -12.172 12.561 18.461 Atomic orbital electron populations 1.22389 0.87349 1.02482 1.00107 1.61652 1.07766 1.13268 1.41247 1.22708 1.01510 0.88441 0.96412 1.21649 0.97322 0.88085 0.86098 0.91225 1.86596 1.25920 1.75995 1.47533 1.23382 1.01875 0.96070 0.92648 1.68485 1.06942 1.09671 1.34257 1.24097 0.98379 0.89012 0.99819 1.20138 0.91809 0.91115 0.79360 1.86025 1.36313 1.95931 1.21418 1.21918 1.00681 1.17610 1.19902 0.91617 1.25844 0.97905 0.98515 0.95106 1.69437 1.16525 1.41287 1.28771 0.85454 0.77403 0.79115 0.78721 1.20601 1.19337 1.19668 1.24380 0.89882 0.99613 0.99052 1.22533 1.05928 0.90204 0.93408 1.23098 0.93114 1.00659 1.02665 1.23106 0.98393 0.95902 1.03248 0.92751 0.90371 0.95344 0.88753 0.93739 0.77228 0.88830 0.93578 0.90685 0.90255 0.76438 0.91644 0.92504 0.93533 0.88860 0.89139 0.87165 0.87081 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.17 127.69 1.17 1.75 16 2 N -0.52 -11.91 4.78 -897.08 -4.28 -16.19 16 3 C 0.04 0.87 4.58 86.30 0.40 1.27 16 4 C 0.13 3.80 2.89 30.59 0.09 3.89 16 5 H 0.07 2.45 5.83 -2.39 -0.01 2.43 16 6 O -0.55 -17.61 13.15 -148.98 -1.96 -19.57 16 7 C -0.01 -0.32 4.45 86.30 0.38 0.06 16 8 N -0.47 -19.63 6.21 -910.87 -5.66 -25.28 16 9 C 0.02 0.67 7.36 86.41 0.64 1.31 16 10 C 0.22 11.24 1.44 -10.89 -0.02 11.23 16 11 O -0.59 -33.23 13.48 -148.98 -2.01 -35.24 16 12 C -0.56 -30.32 8.62 25.60 0.22 -30.10 16 13 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 14 C 0.03 1.38 5.40 84.66 0.46 1.84 16 15 N -0.92 -50.40 11.09 21.45 0.24 -50.16 16 16 Si 0.97 41.63 29.54 68.60 2.03 43.65 16 17 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.00 0.02 6.43 86.41 0.56 0.57 16 21 C -0.01 -0.22 5.27 44.91 0.24 0.01 16 22 C -0.16 -2.47 10.46 30.59 0.32 -2.15 16 23 C -0.17 -2.60 9.72 30.59 0.30 -2.30 16 24 H 0.05 1.50 6.47 -2.39 -0.02 1.48 16 25 H 0.08 1.63 6.76 -2.39 -0.02 1.61 16 26 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.09 1.84 8.08 -2.38 -0.02 1.82 16 28 H 0.04 0.99 8.12 -2.39 -0.02 0.97 16 29 H 0.38 9.13 9.04 -74.06 -0.67 8.46 16 30 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.05 1.42 7.69 -2.39 -0.02 1.40 16 32 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.08 3.13 7.75 -2.39 -0.02 3.11 16 34 H 0.38 22.16 6.46 -74.05 -0.48 21.69 16 35 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 36 H 0.06 2.64 7.73 -2.39 -0.02 2.62 16 37 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.09 1.58 8.08 -2.39 -0.02 1.56 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.55 7.25 -2.39 -0.02 1.53 16 Total: -1.00 -62.31 337.74 -7.03 -69.34 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -0.13 Total: 46.06 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.75 Total: -12.62 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -9.70 Total: -91.64 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -3.97 Total: -54.80 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -62.31 -7.03 -69.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581542818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.003 kcal (2) G-P(sol) polarization free energy of solvation -62.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds