Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47075 * 2 1 4 4 C 1.46499 * 120.00225 * 89.99694 * 3 2 1 5 5 C 1.34780 * 119.99546 * 270.00256 * 3 2 1 6 6 O 1.21279 * 120.00031 * 359.97438 * 5 3 2 7 7 C 1.50699 * 119.99563 * 180.02562 * 5 3 2 8 8 C 1.53001 * 109.47045 * 179.97438 * 7 5 3 9 9 N 1.46904 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.48530 * 110.99854 * 52.60475 * 9 8 7 11 11 C 1.54941 * 103.22526 * 159.72026 * 10 9 8 12 12 C 1.54595 * 102.91947 * 322.58494 * 11 10 9 13 13 O 1.42902 * 110.39130 * 262.99403 * 12 11 10 14 14 C 1.50701 * 110.30547 * 140.87705 * 12 11 10 15 15 H 1.07997 * 119.99349 * 244.27851 * 14 12 11 16 16 C 1.37878 * 120.00249 * 64.28456 * 14 12 11 17 17 N 1.31511 * 119.99878 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99847 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47442 * 89.99527 * 18 16 14 20 20 H 1.48506 * 109.47163 * 209.99622 * 18 16 14 21 21 H 1.48502 * 109.47093 * 329.99332 * 18 16 14 22 22 C 1.47905 * 110.99818 * 169.99703 * 9 8 7 23 23 H 1.09002 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46869 * 300.00135 * 1 2 3 25 25 H 1.09000 * 109.47402 * 60.00317 * 1 2 3 26 26 H 1.08993 * 109.46802 * 239.99689 * 2 1 3 27 27 H 1.09000 * 109.46667 * 119.99799 * 2 1 3 28 28 H 1.09002 * 109.47391 * 270.00005 * 4 3 2 29 29 H 1.09001 * 109.46813 * 150.00061 * 4 3 2 30 30 H 1.09004 * 109.47041 * 30.00189 * 4 3 2 31 31 H 1.09004 * 109.47017 * 299.99442 * 7 5 3 32 32 H 1.09002 * 109.47507 * 59.99434 * 7 5 3 33 33 H 1.09004 * 109.47016 * 299.99759 * 8 7 5 34 34 H 1.09002 * 109.47172 * 59.99545 * 8 7 5 35 35 H 1.09003 * 110.66623 * 278.15551 * 10 9 8 36 36 H 1.09004 * 110.67092 * 41.28166 * 10 9 8 37 37 H 1.09000 * 110.72274 * 204.22614 * 11 10 9 38 38 H 1.08998 * 110.87810 * 81.01608 * 11 10 9 39 39 H 0.96705 * 114.00538 * 295.77562 * 13 12 11 40 40 H 0.97002 * 119.99819 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.91776 * 333.51329 * 22 9 8 42 42 H 1.09007 * 109.91471 * 94.80357 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 2.2429 2.0165 -1.1673 6 8 2.0412 1.4446 -2.2175 7 6 2.7458 3.4371 -1.1673 8 6 2.9162 3.9178 -2.6098 9 7 3.4058 5.3028 -2.6099 10 6 4.6216 5.4376 -1.7674 11 6 5.2718 6.7434 -2.2896 12 6 5.0069 6.6769 -3.8112 13 8 6.1496 6.1562 -4.4933 14 6 4.6602 8.0441 -4.3420 15 1 3.6804 8.2297 -4.7567 16 6 5.5938 9.0577 -4.2983 17 7 6.7867 8.8316 -3.7929 18 14 5.1637 10.7525 -4.9555 19 1 4.5849 11.5750 -3.8629 20 1 6.3913 11.4093 -5.4723 21 1 4.1730 10.6207 -6.0539 22 6 3.8090 5.7224 -3.9696 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.3541 2.5857 1.5833 29 1 3.0644 2.7985 1.1383 30 1 2.5506 1.3452 2.0284 31 1 2.0281 4.0766 -0.6533 32 1 3.7061 3.4827 -0.6536 33 1 3.6341 3.2782 -3.1235 34 1 1.9561 3.8721 -3.1238 35 1 4.3520 5.5359 -0.7158 36 1 5.2892 4.5889 -1.9167 37 1 6.3423 6.7501 -2.0844 38 1 4.7912 7.6185 -1.8523 39 1 6.9356 6.7158 -4.4281 40 1 7.4434 9.5449 -3.7618 41 1 4.1031 4.8513 -4.5551 42 1 2.9837 6.2402 -4.4584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = -82.798227 kcal Electronic energy + Delta-G solvation = -21405.654012 eV Core-core repulsion = 18192.622542 eV Total energy + Delta-G solvation = -3213.031470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.05723 -38.32493 -36.00439 -35.01838 -32.31969 -32.03452 -30.92326 -28.59281 -27.76549 -26.84837 -24.79855 -23.69906 -22.30572 -20.13151 -19.44138 -18.88064 -17.18702 -17.05324 -16.38959 -15.82571 -15.04758 -14.93007 -14.63363 -14.11881 -13.91155 -13.78134 -13.58862 -13.05864 -12.94855 -12.52080 -12.49155 -12.16576 -12.12263 -12.02757 -11.87833 -11.29776 -11.25524 -11.03279 -10.83345 -10.67936 -10.52381 -10.43547 -10.25296 -9.91245 -9.77215 -9.11922 -8.88319 -8.55412 -8.06407 -7.75050 -6.16590 -4.22329 2.60515 2.83993 3.26380 3.33210 3.37857 4.32923 4.37298 4.73071 4.84306 4.94261 4.96345 5.09984 5.14456 5.16237 5.19326 5.34559 5.43180 5.44950 5.67323 5.73330 5.75119 5.93537 5.95529 6.10605 6.15534 6.25689 6.30963 6.38453 6.51648 6.52118 6.97322 7.08884 7.19351 7.32527 7.55272 7.68910 7.74479 7.88504 8.12481 8.20690 8.79387 9.44771 9.57471 10.91094 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043745 B = 0.003537 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.915329 B = 7914.149084 C = 7981.744163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.624 5.624 4 C 0.078 3.922 5 C 0.516 3.484 6 O -0.537 6.537 7 C -0.137 4.137 8 C 0.063 3.937 9 N -0.515 5.515 10 C 0.028 3.972 11 C -0.118 4.118 12 C 0.243 3.757 13 O -0.595 6.595 14 C -0.527 4.527 15 H 0.062 0.938 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.055 3.945 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.383 0.617 40 H 0.266 0.734 41 H 0.037 0.963 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 -12.712 11.911 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.359 5.359 4 C -0.066 4.066 5 C 0.305 3.695 6 O -0.414 6.414 7 C -0.177 4.177 8 C -0.066 4.066 9 N -0.240 5.240 10 C -0.100 4.100 11 C -0.157 4.157 12 C 0.202 3.798 13 O -0.405 6.405 14 C -0.565 4.565 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.541 5.541 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.073 4.073 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.235 0.765 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.310 -13.094 11.425 19.262 hybrid contribution 0.831 0.899 -0.223 1.244 sum -7.479 -12.195 11.203 18.170 Atomic orbital electron populations 1.22126 0.95975 1.02082 1.02375 1.21414 0.94449 0.82414 1.02952 1.47959 1.66988 1.14411 1.06544 1.21828 1.01654 0.97891 0.85179 1.20887 0.76803 0.88859 0.82966 1.90691 1.51666 1.68029 1.30987 1.21749 1.03101 0.92221 1.00617 1.21987 1.01240 0.89591 0.93813 1.64883 1.29872 1.19010 1.10216 1.23319 0.90750 0.99034 0.96848 1.22975 0.99415 0.94312 0.99004 1.19358 0.82366 0.90294 0.87735 1.86095 1.23850 1.52826 1.77699 1.21722 0.99690 0.94741 1.40348 0.91947 1.25017 0.94929 0.99178 0.94312 1.69623 1.04941 1.33749 1.45830 0.86451 0.77893 0.83555 0.79245 1.20565 1.21192 1.19798 1.22867 0.98112 0.97996 0.88306 0.91732 0.92665 0.92126 0.89948 0.90790 0.92481 0.90551 0.91144 0.88140 0.88812 0.94337 0.90509 0.91760 0.94902 0.91784 0.91376 0.76547 0.92397 0.94422 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.11 1.00 6.17 -4.04 -0.02 0.98 16 3 N -0.62 -6.52 2.87 -181.57 -0.52 -7.04 16 4 C 0.08 0.54 10.29 59.85 0.62 1.16 16 5 C 0.52 7.15 7.67 -10.98 -0.08 7.07 16 6 O -0.54 -9.43 15.56 5.56 0.09 -9.34 16 7 C -0.14 -1.83 3.91 -27.88 -0.11 -1.94 16 8 C 0.06 1.08 4.32 -3.82 -0.02 1.06 16 9 N -0.52 -10.14 5.40 -230.45 -1.24 -11.39 16 10 C 0.03 0.54 5.10 -1.90 -0.01 0.53 16 11 C -0.12 -2.74 5.50 -24.87 -0.14 -2.88 16 12 C 0.24 6.16 0.99 -90.42 -0.09 6.07 16 13 O -0.59 -15.92 12.93 -35.23 -0.46 -16.38 16 14 C -0.53 -14.37 8.10 -34.44 -0.28 -14.65 16 15 H 0.06 1.70 7.34 -52.49 -0.39 1.32 16 16 C 0.07 1.79 5.26 -17.82 -0.09 1.70 16 17 N -0.90 -24.23 10.88 55.43 0.60 -23.63 16 18 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.05 1.24 6.17 -2.76 -0.02 1.23 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.89 7.42 -51.93 -0.39 0.50 16 27 H 0.07 0.48 7.89 -51.93 -0.41 0.08 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 30 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16 31 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.09 1.15 6.06 -51.93 -0.31 0.84 16 33 H 0.04 0.72 7.77 -51.93 -0.40 0.32 16 34 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.06 1.06 7.67 -51.93 -0.40 0.66 16 36 H 0.03 0.63 8.00 -51.93 -0.42 0.21 16 37 H 0.06 1.54 8.06 -51.93 -0.42 1.12 16 38 H 0.07 1.66 7.85 -51.93 -0.41 1.25 16 39 H 0.38 10.35 7.05 45.56 0.32 10.67 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.04 0.87 7.39 -51.93 -0.38 0.48 16 42 H 0.08 1.81 7.39 -51.92 -0.38 1.43 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -30.55 333.51 -7.79 -38.34 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.40 Total: 9.20 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 0.14 Total: -0.70 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -1.16 Total: -42.05 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.37 Total: -25.72 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.55 -7.79 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.462 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds