Wall clock time and date at job start Mon Mar 30 2020 00:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47075 * 2 1 4 4 C 1.46499 * 120.00225 * 89.99694 * 3 2 1 5 5 C 1.34780 * 119.99546 * 270.00256 * 3 2 1 6 6 O 1.21279 * 120.00031 * 359.97438 * 5 3 2 7 7 C 1.50699 * 119.99563 * 180.02562 * 5 3 2 8 8 C 1.53001 * 109.47045 * 179.97438 * 7 5 3 9 9 N 1.46904 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.48530 * 110.99854 * 52.60475 * 9 8 7 11 11 C 1.54941 * 103.22526 * 159.72026 * 10 9 8 12 12 C 1.54595 * 102.91947 * 322.58494 * 11 10 9 13 13 O 1.42902 * 110.39130 * 262.99403 * 12 11 10 14 14 C 1.50701 * 110.30547 * 140.87705 * 12 11 10 15 15 H 1.07997 * 119.99349 * 244.27851 * 14 12 11 16 16 C 1.37878 * 120.00249 * 64.28456 * 14 12 11 17 17 N 1.31511 * 119.99878 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99847 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47442 * 89.99527 * 18 16 14 20 20 H 1.48506 * 109.47163 * 209.99622 * 18 16 14 21 21 H 1.48502 * 109.47093 * 329.99332 * 18 16 14 22 22 C 1.47905 * 110.99818 * 169.99703 * 9 8 7 23 23 H 1.09002 * 109.46966 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46869 * 300.00135 * 1 2 3 25 25 H 1.09000 * 109.47402 * 60.00317 * 1 2 3 26 26 H 1.08993 * 109.46802 * 239.99689 * 2 1 3 27 27 H 1.09000 * 109.46667 * 119.99799 * 2 1 3 28 28 H 1.09002 * 109.47391 * 270.00005 * 4 3 2 29 29 H 1.09001 * 109.46813 * 150.00061 * 4 3 2 30 30 H 1.09004 * 109.47041 * 30.00189 * 4 3 2 31 31 H 1.09004 * 109.47017 * 299.99442 * 7 5 3 32 32 H 1.09002 * 109.47507 * 59.99434 * 7 5 3 33 33 H 1.09004 * 109.47016 * 299.99759 * 8 7 5 34 34 H 1.09002 * 109.47172 * 59.99545 * 8 7 5 35 35 H 1.09003 * 110.66623 * 278.15551 * 10 9 8 36 36 H 1.09004 * 110.67092 * 41.28166 * 10 9 8 37 37 H 1.09000 * 110.72274 * 204.22614 * 11 10 9 38 38 H 1.08998 * 110.87810 * 81.01608 * 11 10 9 39 39 H 0.96705 * 114.00538 * 295.77562 * 13 12 11 40 40 H 0.97002 * 119.99819 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.91776 * 333.51329 * 22 9 8 42 42 H 1.09007 * 109.91471 * 94.80357 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 2.2429 2.0165 -1.1673 6 8 2.0412 1.4446 -2.2175 7 6 2.7458 3.4371 -1.1673 8 6 2.9162 3.9178 -2.6098 9 7 3.4058 5.3028 -2.6099 10 6 4.6216 5.4376 -1.7674 11 6 5.2718 6.7434 -2.2896 12 6 5.0069 6.6769 -3.8112 13 8 6.1496 6.1562 -4.4933 14 6 4.6602 8.0441 -4.3420 15 1 3.6804 8.2297 -4.7567 16 6 5.5938 9.0577 -4.2983 17 7 6.7867 8.8316 -3.7929 18 14 5.1637 10.7525 -4.9555 19 1 4.5849 11.5750 -3.8629 20 1 6.3913 11.4093 -5.4723 21 1 4.1730 10.6207 -6.0539 22 6 3.8090 5.7224 -3.9696 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.3541 2.5857 1.5833 29 1 3.0644 2.7985 1.1383 30 1 2.5506 1.3452 2.0284 31 1 2.0281 4.0766 -0.6533 32 1 3.7061 3.4827 -0.6536 33 1 3.6341 3.2782 -3.1235 34 1 1.9561 3.8721 -3.1238 35 1 4.3520 5.5359 -0.7158 36 1 5.2892 4.5889 -1.9167 37 1 6.3423 6.7501 -2.0844 38 1 4.7912 7.6185 -1.8523 39 1 6.9356 6.7158 -4.4281 40 1 7.4434 9.5449 -3.7618 41 1 4.1031 4.8513 -4.5551 42 1 2.9837 6.2402 -4.4584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:27 Heat of formation + Delta-G solvation = -105.831382 kcal Electronic energy + Delta-G solvation = -21406.652805 eV Core-core repulsion = 18192.622542 eV Total energy + Delta-G solvation = -3214.030262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11212 -40.01654 -37.06685 -36.69722 -34.12328 -33.55937 -32.01292 -30.16741 -29.51742 -27.54148 -26.51694 -25.00796 -23.49932 -21.62560 -21.29332 -19.94193 -19.11216 -18.20074 -17.34541 -16.95229 -16.77433 -16.64251 -16.18337 -15.73072 -15.27219 -14.96125 -14.60091 -14.21478 -14.00601 -13.90901 -13.71431 -13.62950 -13.38437 -13.21812 -13.04810 -12.84281 -12.80973 -12.53479 -12.39896 -12.27029 -12.04396 -12.01198 -11.88101 -11.83483 -11.08661 -10.86319 -10.60028 -10.08656 -9.70337 -9.38313 -8.20509 -6.34062 1.42020 1.43836 1.53807 1.57631 2.00320 2.40762 2.97535 3.11854 3.69028 3.78826 3.96230 4.06876 4.17706 4.26749 4.28603 4.33549 4.37607 4.49993 4.54883 4.57270 4.59567 4.74237 4.80767 4.83987 4.88703 4.94627 5.00693 5.01329 5.10684 5.26266 5.27546 5.42676 5.60413 5.62790 5.77667 5.95478 6.12578 6.20030 6.33546 6.69814 7.13915 7.35774 7.46176 8.85647 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.043745 B = 0.003537 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.915329 B = 7914.149084 C = 7981.744163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.617 5.617 4 C 0.069 3.931 5 C 0.511 3.489 6 O -0.587 6.587 7 C -0.125 4.125 8 C 0.067 3.933 9 N -0.511 5.511 10 C 0.039 3.961 11 C -0.111 4.111 12 C 0.225 3.775 13 O -0.605 6.605 14 C -0.555 4.555 15 H 0.052 0.948 16 C 0.028 3.972 17 N -0.914 5.914 18 Si 0.961 3.039 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.275 1.275 22 C 0.060 3.940 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.035 0.965 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.378 0.622 40 H 0.270 0.730 41 H 0.027 0.973 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 -12.836 14.374 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.350 5.350 4 C -0.073 4.073 5 C 0.300 3.700 6 O -0.468 6.468 7 C -0.165 4.165 8 C -0.062 4.062 9 N -0.236 5.236 10 C -0.088 4.088 11 C -0.150 4.150 12 C 0.185 3.815 13 O -0.414 6.414 14 C -0.593 4.593 15 H 0.071 0.929 16 C -0.172 4.172 17 N -0.555 5.555 18 Si 0.787 3.213 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.200 1.200 22 C -0.069 4.069 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.229 0.771 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.901 -13.232 13.947 21.186 hybrid contribution 1.014 0.898 -0.958 1.659 sum -7.886 -12.334 12.989 19.571 Atomic orbital electron populations 1.22072 0.95371 1.02970 1.01534 1.21583 0.94947 0.81773 1.03439 1.48065 1.65339 1.14843 1.06759 1.22131 1.02616 0.98694 0.83870 1.20968 0.76721 0.88989 0.83357 1.90675 1.54136 1.69023 1.32939 1.21642 1.04650 0.92336 0.97884 1.21933 0.99986 0.87686 0.96604 1.64878 1.29782 1.20665 1.08249 1.23304 0.90215 0.96738 0.98565 1.22759 0.98763 0.95917 0.97545 1.19643 0.82537 0.90307 0.89001 1.86090 1.24126 1.52886 1.78313 1.21948 0.99696 0.96200 1.41480 0.92927 1.25692 0.94849 1.02330 0.94352 1.69695 1.05335 1.34683 1.45740 0.85509 0.77662 0.79497 0.78625 1.19810 1.20574 1.20015 1.22716 0.96924 0.97043 0.90167 0.90099 0.91241 0.95053 0.92321 0.87397 0.91167 0.89964 0.88636 0.86072 0.87040 0.96340 0.91288 0.87779 0.94642 0.93098 0.92876 0.77121 0.92099 0.95481 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 10.24 71.98 0.74 -1.68 16 2 C 0.10 1.70 6.17 86.38 0.53 2.23 16 3 N -0.62 -11.43 2.87 -846.75 -2.43 -13.86 16 4 C 0.07 0.69 10.29 127.77 1.31 2.00 16 5 C 0.51 13.56 7.67 87.66 0.67 14.23 16 6 O -0.59 -20.95 15.56 -3.02 -0.05 -21.00 16 7 C -0.13 -3.07 3.91 29.85 0.12 -2.95 16 8 C 0.07 2.26 4.32 86.30 0.37 2.63 16 9 N -0.51 -19.71 5.40 -883.00 -4.77 -24.48 16 10 C 0.04 1.43 5.10 86.65 0.44 1.87 16 11 C -0.11 -5.13 5.50 31.80 0.17 -4.95 16 12 C 0.22 11.59 0.99 -10.66 -0.01 11.58 16 13 O -0.60 -33.10 12.93 -148.98 -1.93 -35.03 16 14 C -0.56 -30.75 8.10 25.60 0.21 -30.54 16 15 H 0.05 2.93 7.34 -2.91 -0.02 2.91 16 16 C 0.03 1.48 5.26 84.66 0.45 1.93 16 17 N -0.91 -49.30 10.88 21.45 0.23 -49.07 16 18 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.06 2.76 6.17 86.44 0.53 3.29 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 1.25 7.42 -2.39 -0.02 1.23 16 27 H 0.11 1.03 7.89 -2.39 -0.02 1.01 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.76 6.44 -2.39 -0.02 0.75 16 30 H 0.10 0.52 7.89 -2.38 -0.02 0.50 16 31 H 0.12 2.50 8.11 -2.39 -0.02 2.48 16 32 H 0.11 2.35 6.06 -2.39 -0.01 2.33 16 33 H 0.02 0.70 7.77 -2.39 -0.02 0.68 16 34 H 0.07 2.44 8.10 -2.39 -0.02 2.42 16 35 H 0.10 3.02 7.67 -2.39 -0.02 3.00 16 36 H 0.04 1.29 8.00 -2.39 -0.02 1.27 16 37 H 0.05 2.44 8.06 -2.39 -0.02 2.42 16 38 H 0.05 2.57 7.85 -2.39 -0.02 2.56 16 39 H 0.38 20.96 7.05 -74.05 -0.52 20.43 16 40 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.03 1.29 7.39 -2.39 -0.02 1.27 16 42 H 0.07 3.38 7.39 -2.38 -0.02 3.36 16 Total: -1.00 -67.55 333.51 -0.90 -68.45 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.48 Total: 30.46 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.54 Total: -0.36 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -6.96 Total: -87.41 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -1.97 Total: -56.03 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -67.55 -0.90 -68.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.386 kcal (2) G-P(sol) polarization free energy of solvation -67.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds