Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46857 * 2 1 4 4 C 1.46501 * 120.00207 * 270.00257 * 3 2 1 5 5 C 1.34783 * 119.99973 * 90.00104 * 3 2 1 6 6 O 1.21284 * 119.99752 * 359.97438 * 5 3 2 7 7 C 1.50693 * 119.99788 * 180.02562 * 5 3 2 8 8 C 1.53002 * 109.46776 * 179.97438 * 7 5 3 9 9 N 1.46897 * 109.47275 * 179.97438 * 8 7 5 10 10 C 1.48539 * 110.99979 * 287.39711 * 9 8 7 11 11 C 1.55101 * 103.28523 * 200.33102 * 10 9 8 12 12 C 1.54601 * 102.84531 * 37.30366 * 11 10 9 13 13 O 1.42901 * 110.30513 * 97.11886 * 12 11 10 14 14 C 1.50697 * 110.31058 * 219.18709 * 12 11 10 15 15 H 1.08001 * 120.00199 * 121.74514 * 14 12 11 16 16 C 1.37885 * 120.00010 * 301.47276 * 14 12 11 17 17 N 1.31513 * 119.99702 * 354.62803 * 16 14 12 18 18 Si 1.86798 * 119.99975 * 174.62932 * 16 14 12 19 19 H 1.48498 * 109.47073 * 94.97626 * 18 16 14 20 20 H 1.48503 * 109.46969 * 214.97545 * 18 16 14 21 21 H 1.48493 * 109.47331 * 334.97654 * 18 16 14 22 22 C 1.47895 * 111.00383 * 170.00256 * 9 8 7 23 23 H 1.08993 * 109.47100 * 299.99965 * 1 2 3 24 24 H 1.09002 * 109.46911 * 60.00045 * 1 2 3 25 25 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46900 * 240.00354 * 2 1 3 27 27 H 1.08993 * 109.47011 * 120.00187 * 2 1 3 28 28 H 1.09003 * 109.47116 * 269.99976 * 4 3 2 29 29 H 1.08997 * 109.47222 * 29.99562 * 4 3 2 30 30 H 1.08998 * 109.47365 * 150.00337 * 4 3 2 31 31 H 1.08991 * 109.47784 * 60.00139 * 7 5 3 32 32 H 1.09004 * 109.47143 * 299.99226 * 7 5 3 33 33 H 1.09004 * 109.46977 * 59.99852 * 8 7 5 34 34 H 1.08999 * 109.47326 * 299.99993 * 8 7 5 35 35 H 1.08995 * 110.66728 * 318.71207 * 10 9 8 36 36 H 1.08998 * 110.66430 * 81.67999 * 10 9 8 37 37 H 1.09000 * 110.70964 * 278.99847 * 11 10 9 38 38 H 1.08994 * 110.81390 * 155.66760 * 11 10 9 39 39 H 0.96696 * 113.99894 * 56.44719 * 13 12 11 40 40 H 0.97004 * 119.99688 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.91811 * 26.48820 * 22 9 8 42 42 H 1.09004 * 110.08358 * 265.28955 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 2.2429 2.0166 1.1673 6 8 2.0404 1.4450 2.2176 7 6 2.7446 3.4376 1.1672 8 6 2.9141 3.9186 2.6097 9 7 3.4038 5.3035 2.6098 10 6 4.8290 5.3643 2.1957 11 6 5.3027 6.7339 2.7484 12 6 4.5568 6.8361 4.0988 13 8 5.4077 6.4185 5.1681 14 6 4.0833 8.2481 4.3292 15 1 3.0322 8.4479 4.4765 16 6 4.9926 9.2842 4.3576 17 7 6.2812 9.0302 4.2895 18 14 4.3942 11.0486 4.4927 19 1 4.4068 11.4678 5.9172 20 1 5.2890 11.9363 3.7075 21 1 3.0111 11.1443 3.9609 22 6 3.3540 5.8833 3.9695 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.2919 1.9007 -1.5834 29 1 1.5817 1.6878 -2.0284 30 1 2.0954 3.1411 -1.1383 31 1 2.0264 4.0766 0.6537 32 1 3.7048 3.4839 0.6533 33 1 3.6323 3.2796 3.1237 34 1 1.9539 3.8723 3.1234 35 1 5.3962 4.5512 2.6486 36 1 4.9156 5.3338 1.1096 37 1 5.0048 7.5427 2.0812 38 1 6.3817 6.7371 2.9025 39 1 6.2399 6.9079 5.2227 40 1 6.9208 9.7592 4.3091 41 1 3.4265 5.0906 4.7140 42 1 2.4252 6.4372 4.1064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = -83.543376 kcal Electronic energy + Delta-G solvation = -21355.712238 eV Core-core repulsion = 18142.648457 eV Total energy + Delta-G solvation = -3213.063782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02909 -38.29609 -35.99898 -34.95483 -32.34027 -32.08625 -30.91775 -28.48545 -27.82590 -26.85397 -24.79942 -23.69193 -22.14845 -20.19346 -19.44647 -18.97731 -17.16204 -16.98129 -16.39100 -15.83621 -15.07378 -14.86021 -14.53127 -14.16932 -13.98556 -13.78764 -13.51528 -13.07287 -12.87401 -12.60444 -12.41379 -12.17095 -12.10498 -12.06039 -11.88011 -11.28924 -11.25255 -11.09346 -10.87256 -10.72468 -10.42798 -10.38979 -10.24828 -9.89558 -9.75617 -9.12241 -8.86999 -8.51413 -8.07729 -7.75878 -6.15247 -4.19907 2.61733 2.84568 3.26752 3.34052 3.38936 4.33439 4.38370 4.73767 4.84805 4.94566 4.96599 5.11427 5.15098 5.17140 5.26935 5.35565 5.42116 5.46789 5.68958 5.74240 5.76786 5.91505 5.95403 6.12056 6.17437 6.24736 6.28623 6.37807 6.52338 6.52998 6.97021 7.06724 7.20721 7.33388 7.54678 7.68158 7.74884 7.87808 8.13530 8.24889 8.81582 9.44717 9.55832 10.92926 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039534 B = 0.003551 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.074159 B = 7883.716456 C = 7969.427218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.624 5.624 4 C 0.077 3.923 5 C 0.515 3.485 6 O -0.538 6.538 7 C -0.131 4.131 8 C 0.062 3.938 9 N -0.516 5.516 10 C 0.029 3.971 11 C -0.117 4.117 12 C 0.242 3.758 13 O -0.594 6.594 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.056 3.944 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.379 0.621 40 H 0.265 0.735 41 H 0.036 0.964 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 -13.306 -12.554 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.359 5.359 4 C -0.066 4.066 5 C 0.304 3.696 6 O -0.415 6.415 7 C -0.171 4.171 8 C -0.067 4.067 9 N -0.240 5.240 10 C -0.099 4.099 11 C -0.155 4.155 12 C 0.202 3.798 13 O -0.402 6.402 14 C -0.564 4.564 15 H 0.079 0.921 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.072 4.072 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.229 0.771 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.939 -13.657 -12.244 19.610 hybrid contribution 0.719 0.913 0.258 1.190 sum -6.219 -12.744 -11.985 18.567 Atomic orbital electron populations 1.22127 0.95969 1.02088 1.02385 1.21390 0.94399 0.82510 1.02948 1.47968 1.67044 1.14361 1.06556 1.21820 1.01251 0.98287 0.85241 1.20932 0.76768 0.88942 0.82955 1.90691 1.51684 1.68112 1.31001 1.21622 1.03028 0.91882 1.00574 1.21932 1.01082 0.89779 0.93878 1.64729 1.18943 1.15706 1.24659 1.23377 0.88254 0.99236 0.99047 1.22990 0.99884 0.93383 0.99269 1.19397 0.85679 0.91121 0.83606 1.86134 1.34847 1.64755 1.54506 1.21676 0.94090 0.91432 1.49248 0.92059 1.25003 0.94839 0.99485 0.94000 1.69712 1.00661 1.32606 1.50778 0.86473 0.78850 0.84033 0.78018 1.20716 1.21136 1.19703 1.22818 1.00134 0.96954 0.87250 0.92108 0.92675 0.91719 0.90806 0.89934 0.92493 0.91190 0.90414 0.88121 0.89033 0.94307 0.90690 0.94878 0.91814 0.91328 0.91699 0.77066 0.92525 0.94529 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.11 1.00 6.13 -4.04 -0.02 0.97 16 3 N -0.62 -6.49 2.87 -181.57 -0.52 -7.01 16 4 C 0.08 0.54 10.24 59.85 0.61 1.15 16 5 C 0.52 7.10 7.67 -10.99 -0.08 7.02 16 6 O -0.54 -9.43 15.56 5.55 0.09 -9.35 16 7 C -0.13 -1.74 4.34 -27.89 -0.12 -1.86 16 8 C 0.06 1.07 3.99 -3.82 -0.02 1.05 16 9 N -0.52 -10.11 5.25 -230.35 -1.21 -11.32 16 10 C 0.03 0.55 5.92 -1.81 -0.01 0.54 16 11 C -0.12 -2.71 5.28 -24.78 -0.13 -2.84 16 12 C 0.24 6.13 0.98 -90.41 -0.09 6.04 16 13 O -0.59 -15.83 12.94 -35.23 -0.46 -16.29 16 14 C -0.53 -14.39 8.12 -34.44 -0.28 -14.67 16 15 H 0.06 1.68 7.36 -52.49 -0.39 1.29 16 16 C 0.07 1.84 5.24 -17.82 -0.09 1.74 16 17 N -0.90 -24.20 10.97 55.43 0.61 -23.60 16 18 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.06 1.27 6.13 -2.76 -0.02 1.25 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 27 H 0.08 0.89 7.42 -51.93 -0.39 0.50 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 30 H 0.08 0.52 6.44 -51.93 -0.33 0.19 16 31 H 0.10 1.21 7.40 -51.93 -0.38 0.82 16 32 H 0.09 1.11 7.33 -51.93 -0.38 0.73 16 33 H 0.04 0.72 7.79 -51.93 -0.40 0.32 16 34 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 35 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 36 H 0.06 1.07 7.80 -51.93 -0.40 0.67 16 37 H 0.07 1.68 7.85 -51.93 -0.41 1.27 16 38 H 0.06 1.55 7.90 -51.93 -0.41 1.14 16 39 H 0.38 10.12 7.36 45.56 0.34 10.45 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.04 0.84 7.59 -51.93 -0.39 0.44 16 42 H 0.08 1.80 7.39 -51.93 -0.38 1.42 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -30.64 335.24 -7.76 -38.40 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.43 Total: 8.79 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 0.13 Total: -0.60 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -1.12 Total: -41.93 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.37 Total: -25.64 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.64 -7.76 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.141 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds