Wall clock time and date at job start Mon Mar 30 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46857 * 2 1 4 4 C 1.46501 * 120.00207 * 270.00257 * 3 2 1 5 5 C 1.34783 * 119.99973 * 90.00104 * 3 2 1 6 6 O 1.21284 * 119.99752 * 359.97438 * 5 3 2 7 7 C 1.50693 * 119.99788 * 180.02562 * 5 3 2 8 8 C 1.53002 * 109.46776 * 179.97438 * 7 5 3 9 9 N 1.46897 * 109.47275 * 179.97438 * 8 7 5 10 10 C 1.48539 * 110.99979 * 287.39711 * 9 8 7 11 11 C 1.55101 * 103.28523 * 200.33102 * 10 9 8 12 12 C 1.54601 * 102.84531 * 37.30366 * 11 10 9 13 13 O 1.42901 * 110.30513 * 97.11886 * 12 11 10 14 14 C 1.50697 * 110.31058 * 219.18709 * 12 11 10 15 15 H 1.08001 * 120.00199 * 121.74514 * 14 12 11 16 16 C 1.37885 * 120.00010 * 301.47276 * 14 12 11 17 17 N 1.31513 * 119.99702 * 354.62803 * 16 14 12 18 18 Si 1.86798 * 119.99975 * 174.62932 * 16 14 12 19 19 H 1.48498 * 109.47073 * 94.97626 * 18 16 14 20 20 H 1.48503 * 109.46969 * 214.97545 * 18 16 14 21 21 H 1.48493 * 109.47331 * 334.97654 * 18 16 14 22 22 C 1.47895 * 111.00383 * 170.00256 * 9 8 7 23 23 H 1.08993 * 109.47100 * 299.99965 * 1 2 3 24 24 H 1.09002 * 109.46911 * 60.00045 * 1 2 3 25 25 H 1.09004 * 109.46981 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46900 * 240.00354 * 2 1 3 27 27 H 1.08993 * 109.47011 * 120.00187 * 2 1 3 28 28 H 1.09003 * 109.47116 * 269.99976 * 4 3 2 29 29 H 1.08997 * 109.47222 * 29.99562 * 4 3 2 30 30 H 1.08998 * 109.47365 * 150.00337 * 4 3 2 31 31 H 1.08991 * 109.47784 * 60.00139 * 7 5 3 32 32 H 1.09004 * 109.47143 * 299.99226 * 7 5 3 33 33 H 1.09004 * 109.46977 * 59.99852 * 8 7 5 34 34 H 1.08999 * 109.47326 * 299.99993 * 8 7 5 35 35 H 1.08995 * 110.66728 * 318.71207 * 10 9 8 36 36 H 1.08998 * 110.66430 * 81.67999 * 10 9 8 37 37 H 1.09000 * 110.70964 * 278.99847 * 11 10 9 38 38 H 1.08994 * 110.81390 * 155.66760 * 11 10 9 39 39 H 0.96696 * 113.99894 * 56.44719 * 13 12 11 40 40 H 0.97004 * 119.99688 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.91811 * 26.48820 * 22 9 8 42 42 H 1.09004 * 110.08358 * 265.28955 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 2.2429 2.0166 1.1673 6 8 2.0404 1.4450 2.2176 7 6 2.7446 3.4376 1.1672 8 6 2.9141 3.9186 2.6097 9 7 3.4038 5.3035 2.6098 10 6 4.8290 5.3643 2.1957 11 6 5.3027 6.7339 2.7484 12 6 4.5568 6.8361 4.0988 13 8 5.4077 6.4185 5.1681 14 6 4.0833 8.2481 4.3292 15 1 3.0322 8.4479 4.4765 16 6 4.9926 9.2842 4.3576 17 7 6.2812 9.0302 4.2895 18 14 4.3942 11.0486 4.4927 19 1 4.4068 11.4678 5.9172 20 1 5.2890 11.9363 3.7075 21 1 3.0111 11.1443 3.9609 22 6 3.3540 5.8833 3.9695 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.2919 1.9007 -1.5834 29 1 1.5817 1.6878 -2.0284 30 1 2.0954 3.1411 -1.1383 31 1 2.0264 4.0766 0.6537 32 1 3.7048 3.4839 0.6533 33 1 3.6323 3.2796 3.1237 34 1 1.9539 3.8723 3.1234 35 1 5.3962 4.5512 2.6486 36 1 4.9156 5.3338 1.1096 37 1 5.0048 7.5427 2.0812 38 1 6.3817 6.7371 2.9025 39 1 6.2399 6.9079 5.2227 40 1 6.9208 9.7592 4.3091 41 1 3.4265 5.0906 4.7140 42 1 2.4252 6.4372 4.1064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149624.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:29 Heat of formation + Delta-G solvation = -106.496441 kcal Electronic energy + Delta-G solvation = -21356.707558 eV Core-core repulsion = 18142.648457 eV Total energy + Delta-G solvation = -3214.059101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 270.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07207 -40.00616 -37.03507 -36.65336 -34.17736 -33.57160 -31.99656 -30.07095 -29.58693 -27.54079 -26.53518 -24.96777 -23.34024 -21.75859 -21.30468 -19.99001 -19.04151 -18.17319 -17.32223 -16.90366 -16.80543 -16.66030 -16.13285 -15.72745 -15.35016 -14.92148 -14.60349 -14.17594 -14.01620 -13.88167 -13.72293 -13.57477 -13.37028 -13.21289 -13.06556 -12.87164 -12.83031 -12.56847 -12.43609 -12.24601 -12.06393 -11.95365 -11.88308 -11.79694 -11.07380 -10.85031 -10.55853 -10.10629 -9.68649 -9.40095 -8.19581 -6.32183 1.41840 1.44126 1.54817 1.59149 2.00888 2.41721 2.98119 3.12129 3.70419 3.82932 3.95244 4.08056 4.19518 4.27144 4.29480 4.33018 4.37593 4.53100 4.54013 4.57896 4.60492 4.72426 4.80167 4.84002 4.89216 4.95688 5.01195 5.03926 5.10299 5.23824 5.27954 5.43493 5.61050 5.61809 5.77907 5.94219 6.13405 6.22526 6.34785 6.71600 7.15229 7.35564 7.45759 8.87012 Molecular weight = 270.17amu Principal moments of inertia in cm(-1) A = 0.039534 B = 0.003551 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.074159 B = 7883.716456 C = 7969.427218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.617 5.617 4 C 0.069 3.931 5 C 0.510 3.490 6 O -0.588 6.588 7 C -0.119 4.119 8 C 0.066 3.934 9 N -0.509 5.509 10 C 0.039 3.961 11 C -0.108 4.108 12 C 0.224 3.776 13 O -0.604 6.604 14 C -0.554 4.554 15 H 0.051 0.949 16 C 0.029 3.971 17 N -0.911 5.911 18 Si 0.959 3.041 19 H -0.280 1.280 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.061 3.939 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.375 0.625 40 H 0.268 0.732 41 H 0.026 0.974 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -13.482 -15.175 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.350 5.350 4 C -0.073 4.073 5 C 0.299 3.701 6 O -0.469 6.469 7 C -0.159 4.159 8 C -0.063 4.063 9 N -0.234 5.234 10 C -0.088 4.088 11 C -0.147 4.147 12 C 0.185 3.815 13 O -0.412 6.412 14 C -0.593 4.593 15 H 0.070 0.930 16 C -0.171 4.171 17 N -0.551 5.551 18 Si 0.785 3.215 19 H -0.206 1.206 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.067 4.067 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.125 0.875 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.225 0.775 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.333 -13.848 -14.920 21.637 hybrid contribution 0.844 0.928 1.055 1.639 sum -6.490 -12.920 -13.865 20.032 Atomic orbital electron populations 1.22076 0.95350 1.02977 1.01569 1.21554 0.94906 0.81864 1.03407 1.48072 1.65387 1.14803 1.06774 1.22116 1.02827 0.98460 0.83902 1.21012 0.76672 0.89074 0.83332 1.90676 1.54157 1.69118 1.32956 1.21507 1.04622 0.91938 0.97819 1.21898 0.99811 0.87899 0.96654 1.64755 1.19107 1.17191 1.22319 1.23346 0.87721 0.96708 1.01075 1.22768 0.98773 0.95184 0.97986 1.19679 0.86536 0.91125 0.84188 1.86130 1.34832 1.64772 1.55509 1.21909 0.93892 0.92955 1.50504 0.93038 1.25681 0.95016 1.02949 0.93483 1.69786 1.01252 1.33653 1.50405 0.85527 0.78461 0.79604 0.77902 1.20627 1.20266 1.19507 1.22675 0.98824 0.96275 0.88957 0.95075 0.91169 0.90093 0.87472 0.92302 0.91087 0.88803 0.89865 0.86220 0.87105 0.96035 0.91720 0.94934 0.88056 0.92796 0.92999 0.77542 0.92240 0.95591 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 10.24 71.98 0.74 -1.67 16 2 C 0.10 1.70 6.13 86.38 0.53 2.22 16 3 N -0.62 -11.39 2.87 -846.75 -2.43 -13.83 16 4 C 0.07 0.68 10.24 127.77 1.31 1.99 16 5 C 0.51 13.49 7.67 87.65 0.67 14.16 16 6 O -0.59 -20.96 15.56 -3.04 -0.05 -21.01 16 7 C -0.12 -2.90 4.34 29.85 0.13 -2.77 16 8 C 0.07 2.24 3.99 86.30 0.34 2.58 16 9 N -0.51 -19.55 5.25 -882.69 -4.63 -24.18 16 10 C 0.04 1.45 5.92 86.71 0.51 1.96 16 11 C -0.11 -5.02 5.28 31.86 0.17 -4.85 16 12 C 0.22 11.55 0.98 -10.66 -0.01 11.53 16 13 O -0.60 -32.99 12.94 -148.98 -1.93 -34.92 16 14 C -0.55 -30.74 8.12 25.60 0.21 -30.53 16 15 H 0.05 2.87 7.36 -2.91 -0.02 2.85 16 16 C 0.03 1.56 5.24 84.66 0.44 2.01 16 17 N -0.91 -49.26 10.97 21.45 0.24 -49.03 16 18 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 C 0.06 2.80 6.13 86.45 0.53 3.33 16 23 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.11 1.03 8.07 -2.39 -0.02 1.01 16 27 H 0.06 1.25 7.42 -2.39 -0.02 1.23 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.54 8.07 -2.39 -0.02 0.52 16 30 H 0.08 0.78 6.44 -2.39 -0.02 0.76 16 31 H 0.12 2.50 7.40 -2.39 -0.02 2.48 16 32 H 0.11 2.29 7.33 -2.38 -0.02 2.27 16 33 H 0.02 0.80 7.79 -2.38 -0.02 0.78 16 34 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 35 H 0.03 1.23 7.81 -2.39 -0.02 1.21 16 36 H 0.10 3.06 7.80 -2.39 -0.02 3.04 16 37 H 0.05 2.62 7.85 -2.39 -0.02 2.60 16 38 H 0.05 2.50 7.90 -2.39 -0.02 2.48 16 39 H 0.38 20.56 7.36 -74.06 -0.55 20.02 16 40 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 41 H 0.03 1.22 7.59 -2.39 -0.02 1.21 16 42 H 0.07 3.41 7.39 -2.38 -0.02 3.40 16 Total: -1.00 -67.50 335.24 -0.75 -68.25 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.45 Total: 29.87 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 5.57 Total: -0.02 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -6.83 Total: -87.04 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -1.97 Total: -55.93 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.50 -0.75 -68.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149624.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.245 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds